Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009260

Physical Location & Seq

Genomic Coordinates Reverse (-)

20432840 .. 20433456

Gene Structure 617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAAAATGGAAAATGAATTAGAATCAGAATATATTTACAAGGAAGAAAAGTTGCTTCTGTTGATAAAGCAGCAGGAGAAGGCTTCAGCCTCAAGCTTTGAGAGTGCCCAAGATGAAGCTGTTGCGATTAAAGATAAGTATGCCAATAAGCAGAAGCTCATGAGAAGGTGCGTTGATCAATACAAGATTGAACTTCGAAATCCATGCCGGCAAGGAAAGAAACTGCTTGTGCTGGATATTGACTACACTCTGTTTGATCACCGGTCCACCGCAGGGAACCCGCTTCAACTTATGCGGCCTTTTCTTCACGAGTTCCTTACAGCTGCTTACGCGAAATATGGTATCGGTCTGCAACCAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF ubiquitin

Protein Analysis

121

Amino Acids

13.95

Weight (kDa)

8.47

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06599
fragaria_vesca	FvH4_1g28920 FvH4_5g28710 FvH4_5g28710 FvH4_6g22010 FvH4_7g16160 FvH4_7g16790
malus_domestica	MD08G1239400.v1.1 MD08G1239500.v1.1 MD15G1431000.v1.1
prunus_persica	Prupe.1G576000_v2.0.a1
pyrus_communis	pycom08g20770
rosa_chinensis	RchiOBHm_Chr7g0220871
rosa_laevigata	RLG00000002196
rosa_multiflora	Rmu_ssc0000286.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238920
rosa_rugosa	Rorug07G0198100
rosa_samantha	Rh7AG338200 Rh7BG329000 Rh7CG356300 Rh7DG337100
rosa_wichuraiana	Rw6G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	332
AciI	CCGC	3 cut(s)	270, 281, 295
AcuI	CTGAAG	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	273
AgeI	ACCGGT	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	191, 287
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	4 cut(s)	96, 119, 157, 323
AluI	AGCT	4 cut(s)	96, 119, 157, 323
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	70, 323
AsiGI	ACCGGT	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	251
AsuII	TTCGAA	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	109
BauI	CACGAG	1 cut(s)	308
BbvI	GCAGC	2 cut(s)	82, 310
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BciT130I	CCWGG	1 cut(s)	357
BclI	TGATCA	2 cut(s)	175, 256
BisI	GCNGC	3 cut(s)	71, 296, 324
BlsI	GCNGC	3 cut(s)	72, 297, 325
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	196
BpuEI	CTTGAG	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse118I	RCCGGY	2 cut(s)	207, 261
BseBI	CCWGG	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseSI	GKGCMC	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	82, 310
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	1 cut(s)	298
BshTI	ACCGGT	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	208, 262
BslI	CCNNNNNNNGG	1 cut(s)	273
BsnI	GGCC	1 cut(s)	298
Bsp119I	TTCGAA	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	175, 256
BspACI	CCGC	3 cut(s)	270, 281, 295
BspANI	GGCC	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	332
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	278
BspT104I	TTCGAA	1 cut(s)	196
BsrFI	RCCGGY	2 cut(s)	207, 261
BssAI	RCCGGY	2 cut(s)	207, 261
BssMI	GATC	2 cut(s)	175, 256
BssSI	CACGAG	1 cut(s)	308
Bst2BI	CACGAG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	357
BstBI	TTCGAA	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	209
BstFNI	CGCG	1 cut(s)	332
BstKTI	GATC	2 cut(s)	178, 259
BstMBI	GATC	2 cut(s)	175, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	109
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	82, 310
BsuRI	GGCC	1 cut(s)	298
Cac8I	GCNNGC	1 cut(s)	209
CciI	TCATGA	1 cut(s)	159
Cfr10I	RCCGGY	2 cut(s)	207, 261
Cfr13I	GGNCC	1 cut(s)	264
CsiI	ACCWGGT	1 cut(s)	355
CspAI	ACCGGT	1 cut(s)	261
CviAII	CATG	2 cut(s)	160, 204
CviJI	RGCY	7 cut(s)	83, 89, 96, 119, 157, 298, 323
CviKI_1	RGCY	7 cut(s)	83, 89, 96, 119, 157, 298, 323
DpnI	GATC	2 cut(s)	177, 258
DpnII	GATC	2 cut(s)	175, 256
Eco47I	GGWCC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	355
FaeI	CATG	2 cut(s)	163, 207
FaiI	YATR	6 cut(s)	33, 141, 161, 205, 293, 339
FatI	CATG	2 cut(s)	159, 203
FauI	CCCGC	1 cut(s)	288
FbaI	TGATCA	2 cut(s)	175, 256
Fnu4HI	GCNGC	3 cut(s)	71, 296, 324
Fsp4HI	GCNGC	3 cut(s)	71, 296, 324
GluI	GCNGC	3 cut(s)	71, 296, 324
HaeIII	GGCC	1 cut(s)	298
HapII	CCGG	2 cut(s)	208, 262
Hin1II	CATG	2 cut(s)	163, 207
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	2 cut(s)	208, 262
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188I	TCNGA	1 cut(s)	28
Hpy188III	TCNNGA	2 cut(s)	160, 308
Hpy8I	GTNNAC	1 cut(s)	267
HpyAV	CCTTC	2 cut(s)	73, 159
HpyCH4V	TGCA	1 cut(s)	352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
Hsp92II	CATG	2 cut(s)	163, 207
KroI	GCCGGC	1 cut(s)	207
KroNI	GCCGGC	1 cut(s)	209
Ksp22I	TGATCA	2 cut(s)	175, 256
Kzo9I	GATC	2 cut(s)	175, 256
LpnPI	CCDG	6 cut(s)	59, 218, 221, 258, 275, 342
Lsp1109I	GCAGC	2 cut(s)	82, 310
MabI	ACCWGGT	1 cut(s)	355
MalI	GATC	2 cut(s)	177, 258
MboI	GATC	2 cut(s)	175, 256
MboII	GAAGA	2 cut(s)	56, 296
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	1 cut(s)	17
MnlI	CCTC	1 cut(s)	100
MroNI	GCCGGC	1 cut(s)	207
MseI	TTAA	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	2 cut(s)	208, 262
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	329
NaeI	GCCGGC	1 cut(s)	209
NdeII	GATC	2 cut(s)	175, 256
NgoMIV	GCCGGC	1 cut(s)	207
NlaIII	CATG	2 cut(s)	163, 207
NlaIV	GGNNCC	1 cut(s)	278
NspV	TTCGAA	1 cut(s)	196
PagI	TCATGA	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	23
PinAI	ACCGGT	1 cut(s)	261
PkrI	GCNGC	3 cut(s)	72, 297, 325
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	278
PspPI	GGNCC	1 cut(s)	264
PvuII	CAGCTG	1 cut(s)	323
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	3 cut(s)	71, 296, 324
Sau3AI	GATC	2 cut(s)	175, 256
Sau96I	GGNCC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	6 cut(s)	98, 121, 159, 170, 325, 361
SexAI	ACCWGGT	1 cut(s)	355
SfuI	TTCGAA	1 cut(s)	196
SinI	GGWCC	1 cut(s)	264
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	3 cut(s)	270, 281, 295
StyD4I	CCNGG	1 cut(s)	355
TaqI	TCGA	1 cut(s)	196
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	1 cut(s)	17
TauI	GCSGC	1 cut(s)	298
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TseI	GCWGC	2 cut(s)	70, 323
TspDTI	ATGAA	3 cut(s)	17, 30, 129
VpaK11BI	GGWCC	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.