Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000286.1

Orthogroup ID

OG0009260

Physical Location & Seq

Genomic Coordinates Reverse (-)

14817 .. 18026

Gene Structure 3210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000286.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atggcagaagaggagctaacgttgacagtcaagtggagcgggaaggagtacacggttcgagtatgcggcgacgacactgtgggcgagctcaagcgccgaatctgccaactcaccaccgtcttgcccaaacgccagaagcttctgtaccccaaactcctgccttccaaattggccgacgacgccgttttgctctcctctctccctttcaagtcctcagtcaaattgaccatgattggttctatggaggatgatattatagtggatcccgtcgagtctcctgacattgttgatgactttgagctcggccaagatgaggctgttgacatcaaggataatcatgttaataaccagaaattgaggaggcgtatagatcattacaagattgaacttaagaatccctgccgccaaggaaagaagctgcttgtgctggatattgattatactctctttgatcatcggtccacagcagagaacccacttcaacttatgcgtccttatcttcatgagtttctgacagctgcttatgcggaatatgatattatgatatggtctgcaaccagcatcaaatgggttgaattgaagatgggacagcttggggtactcaacaatcccaactacaaaatcactgctcttctagaccatttagcaatgattaccgttcagtcagattcgcgtggaatctttgattgcaagccactaggcttaatctgggctcaattccctgagttctacagttcaaaaaacactataatgtttgacgatctgcgaagaaattttgtgatgaacccacaaaatggtttgatcatcaagccgttcaggaaggcccattctagccgagacagtgatcaggagcttatcaaactcacatcatatttgcttgccattgcggaacttgatgatttgagcgcccttgatcataattcctggcagtcatttactgaggacaatgtcaaaagacgtcggcatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF ubiquitin

Protein Analysis

323

Amino Acids

37.27

Weight (kDa)

5.82

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06599
fragaria_vesca	FvH4_1g28920 FvH4_5g28710 FvH4_5g28710 FvH4_6g22010 FvH4_7g16160 FvH4_7g16790
malus_domestica	MD08G1239400.v1.1 MD08G1239500.v1.1 MD15G1431000.v1.1
prunus_persica	Prupe.1G576000_v2.0.a1
pyrus_communis	pycom08g20770
rosa_chinensis	RchiOBHm_Chr7g0220871
rosa_laevigata	RLG00000002196
rosa_multiflora	Rmu_ssc0000286.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238920
rosa_rugosa	Rorug07G0198100
rosa_samantha	Rh7AG338200 Rh7BG329000 Rh7CG356300 Rh7DG337100
rosa_wichuraiana	Rw6G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	961
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccBSI	CCGCTC	1 cut(s)	39
AccII	CGCG	1 cut(s)	673
AciI	CCGC	5 cut(s)	39, 66, 403, 527, 887
AclI	AACGTT	1 cut(s)	20
AclWI	GGATC	2 cut(s)	257, 270
AcoI	YGGCCR	2 cut(s)	171, 304
AcsI	RAATTY	1 cut(s)	772
AcyI	GRCGYC	2 cut(s)	180, 958
AfaI	GTAC	3 cut(s)	50, 146, 600
AfiI	CCNNNNNNNGG	2 cut(s)	313, 794
AflII	CTTAAG	1 cut(s)	389
AgsI	TTSAA	6 cut(s)	208, 386, 482, 575, 580, 738
AjnI	CCWGG	1 cut(s)	923
AluBI	AGCT	8 cut(s)	16, 88, 139, 301, 418, 518, 592, 853
AluI	AGCT	8 cut(s)	16, 88, 139, 301, 418, 518, 592, 853
Alw21I	GWGCWC	2 cut(s)	90, 303
Alw26I	GTCTC	2 cut(s)	279, 831
AlwI	GGATC	2 cut(s)	257, 270
AoxI	GGCC	3 cut(s)	171, 304, 822
ApeKI	GCWGC	2 cut(s)	418, 518
ApoI	RAATTY	1 cut(s)	772
AspLEI	GCGC	2 cut(s)	96, 908
AspS9I	GGNCC	2 cut(s)	459, 823
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	459
BamHI	GGATCC	1 cut(s)	262
BanII	GRGCYC	3 cut(s)	90, 303, 715
BarI	GAAGNNNNNNTAC	2 cut(s)	128, 160
Bbv12I	GWGCWC	2 cut(s)	90, 303
BbvI	GCAGC	2 cut(s)	405, 505
BccI	CCATC	1 cut(s)	577
BceAI	ACGGC	2 cut(s)	167, 796
BciT130I	CCWGG	1 cut(s)	925
BclI	TGATCA	4 cut(s)	451, 801, 844, 913
BcoDI	GTCTC	2 cut(s)	279, 831
BfaI	CTAG	3 cut(s)	635, 698, 831
BfmI	CTRYAG	1 cut(s)	730
BfoI	RGCGCY	2 cut(s)	97, 909
BfrI	CTTAAG	1 cut(s)	389
BisI	GCNGC	4 cut(s)	67, 403, 419, 519
BlsI	GCNGC	4 cut(s)	68, 404, 420, 520
Bme1390I	CCNGG	1 cut(s)	925
Bme18I	GGWCC	1 cut(s)	459
BmgT120I	GGNCC	2 cut(s)	459, 823
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	925
BmsI	GCATC	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	74
BsaHI	GRCGYC	2 cut(s)	180, 958
BsaJI	CCNNGG	1 cut(s)	406
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 794
Bse3DI	GCAATG	2 cut(s)	654, 882
BseBI	CCWGG	1 cut(s)	925
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	2 cut(s)	313, 794
BseMI	GCAATG	2 cut(s)	654, 882
BseMII	CTCAG	3 cut(s)	228, 714, 930
BseRI	GAGGAG	3 cut(s)	26, 184, 373
BseXI	GCAGC	2 cut(s)	405, 505
Bsh1236I	CGCG	1 cut(s)	673
BshFI	GGCC	3 cut(s)	173, 306, 824
BsiHKAI	GWGCWC	2 cut(s)	90, 303
BslFI	GGGAC	1 cut(s)	600
BslI	CCNNNNNNNGG	2 cut(s)	313, 794
BsmAI	GTCTC	2 cut(s)	279, 831
BsmFI	GGGAC	1 cut(s)	600
BsnI	GGCC	3 cut(s)	173, 306, 824
Bsp1286I	GDGCHC	3 cut(s)	90, 303, 715
Bsp143I	GATC	7 cut(s)	262, 370, 451, 760, 801, 844, 913
BspACI	CCGC	5 cut(s)	39, 66, 403, 527, 887
BspANI	GGCC	3 cut(s)	173, 306, 824
BspCNI	CTCAG	3 cut(s)	227, 715, 931
BspFNI	CGCG	1 cut(s)	673
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	257, 270
BspQI	GCTCTTC	1 cut(s)	636
BspTI	CTTAAG	1 cut(s)	389
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	2 cut(s)	654, 882
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	7 cut(s)	262, 370, 451, 760, 801, 844, 913
BssNI	GRCGYC	2 cut(s)	180, 958
BssT1I	CCWWGG	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	925
Bst4CI	ACNGT	7 cut(s)	28, 55, 79, 118, 658, 734, 842
Bst6I	CTCTTC	2 cut(s)	3, 636
BstACI	GRCGYC	2 cut(s)	180, 958
BstAFI	CTTAAG	1 cut(s)	389
BstC8I	GCNNGC	3 cut(s)	86, 692, 879
BstDEI	CTNAG	3 cut(s)	214, 723, 939
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	673
BstH2I	RGCGCY	2 cut(s)	97, 909
BstHHI	GCGC	2 cut(s)	96, 908
BstKTI	GATC	7 cut(s)	265, 373, 454, 763, 804, 847, 916
BstMAI	GTCTC	2 cut(s)	279, 831
BstMBI	GATC	7 cut(s)	262, 370, 451, 760, 801, 844, 913
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 179, 424, 524
BstNI	CCWGG	1 cut(s)	925
BstSCI	CCNGG	1 cut(s)	923
BstSFI	CTRYAG	1 cut(s)	730
BstUI	CGCG	1 cut(s)	673
BstV1I	GCAGC	2 cut(s)	405, 505
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	3 cut(s)	173, 306, 824
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	3 cut(s)	75, 624, 847
Cac8I	GCNNGC	3 cut(s)	86, 692, 879
CciI	TCATGA	1 cut(s)	502
CfoI	GCGC	2 cut(s)	96, 908
Cfr13I	GGNCC	2 cut(s)	459, 823
CseI	GACGC	2 cut(s)	188, 479
Csp6I	GTAC	3 cut(s)	49, 145, 599
CviAII	CATG	4 cut(s)	229, 338, 503, 965
CviQI	GTAC	3 cut(s)	49, 145, 599
DdeI	CTNAG	3 cut(s)	214, 723, 939
DpnI	GATC	7 cut(s)	264, 372, 453, 762, 803, 846, 915
DpnII	GATC	7 cut(s)	262, 370, 451, 760, 801, 844, 913
EaeI	YGGCCR	2 cut(s)	171, 304
Eam1104I	CTCTTC	2 cut(s)	3, 636
EarI	CTCTTC	2 cut(s)	3, 636
Ecl136II	GAGCTC	2 cut(s)	88, 301
Eco130I	CCWWGG	1 cut(s)	406
Eco24I	GRGCYC	3 cut(s)	90, 303, 715
Eco47I	GGWCC	1 cut(s)	459
Eco53kI	GAGCTC	2 cut(s)	88, 301
EcoICRI	GAGCTC	2 cut(s)	88, 301
EcoRII	CCWGG	1 cut(s)	923
EcoT14I	CCWWGG	1 cut(s)	406
EcoT38I	GRGCYC	3 cut(s)	90, 303, 715
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	4 cut(s)	232, 341, 506, 968
FaqI	GGGAC	1 cut(s)	600
FatI	CATG	4 cut(s)	228, 337, 502, 964
FauI	CCCGC	1 cut(s)	32
FbaI	TGATCA	4 cut(s)	451, 801, 844, 913
Fnu4HI	GCNGC	4 cut(s)	67, 403, 419, 519
FokI	GGATG	1 cut(s)	260
FriOI	GRGCYC	3 cut(s)	90, 303, 715
Fsp4HI	GCNGC	4 cut(s)	67, 403, 419, 519
FspBI	CTAG	3 cut(s)	635, 698, 831
GlaI	GCGC	2 cut(s)	95, 907
GluI	GCNGC	4 cut(s)	67, 403, 419, 519
HaeII	RGCGCY	2 cut(s)	97, 909
HaeIII	GGCC	3 cut(s)	173, 306, 824
HgaI	GACGC	2 cut(s)	188, 479
HhaI	GCGC	2 cut(s)	96, 908
Hin1I	GRCGYC	2 cut(s)	180, 958
Hin1II	CATG	4 cut(s)	232, 341, 506, 968
Hin6I	GCGC	2 cut(s)	94, 906
HinP1I	GCGC	2 cut(s)	94, 906
HincII	GTYRAC	2 cut(s)	24, 322
HindII	GTYRAC	2 cut(s)	24, 322
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	5 cut(s)	99, 272, 394, 668, 678
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	4 cut(s)	24, 51, 322, 462
Hpy188I	TCNGA	2 cut(s)	513, 667
Hpy188III	TCNNGA	5 cut(s)	278, 503, 635, 817, 848
Hpy8I	GTNNAC	4 cut(s)	24, 51, 322, 462
Hpy99I	CGWCG	5 cut(s)	74, 179, 182, 272, 963
HpyAV	CCTTC	3 cut(s)	37, 171, 814
HpyCH4III	ACNGT	7 cut(s)	28, 55, 79, 118, 658, 734, 842
HpyCH4IV	ACGT	2 cut(s)	20, 958
HpyCH4V	TGCA	2 cut(s)	554, 690
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 179, 424, 524
HpyF3I	CTNAG	3 cut(s)	214, 723, 939
HpySE526I	ACGT	2 cut(s)	20, 958
Hsp92I	GRCGYC	2 cut(s)	180, 958
Hsp92II	CATG	4 cut(s)	232, 341, 506, 968
HspAI	GCGC	2 cut(s)	94, 906
Ksp22I	TGATCA	4 cut(s)	451, 801, 844, 913
Kzo9I	GATC	7 cut(s)	262, 370, 451, 760, 801, 844, 913
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	3 cut(s)	13, 36, 850
Lsp1109I	GCAGC	2 cut(s)	405, 505
LweI	GCATC	1 cut(s)	570
MaeI	CTAG	3 cut(s)	635, 698, 831
MaeII	ACGT	2 cut(s)	20, 958
MalI	GATC	7 cut(s)	264, 372, 453, 762, 803, 846, 915
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	7 cut(s)	262, 370, 451, 760, 801, 844, 913
MboII	GAAGA	5 cut(s)	20, 491, 592, 623, 780
MflI	RGATCY	1 cut(s)	262
MhlI	GDGCHC	3 cut(s)	90, 303, 715
MluCI	AATT	7 cut(s)	167, 221, 353, 575, 716, 772, 919
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	8 cut(s)	4, 205, 223, 238, 307, 351, 354, 934
MseI	TTAA	3 cut(s)	342, 390, 704
MslI	CAYNNNNRTG	1 cut(s)	749
MspA1I	CMGCKG	1 cut(s)	518
MspCI	CTTAAG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	925
MvaI	CCWGG	1 cut(s)	925
MvnI	CGCG	1 cut(s)	673
MwoI	GCNNNNNNNGC	4 cut(s)	102, 179, 424, 524
NdeII	GATC	7 cut(s)	262, 370, 451, 760, 801, 844, 913
NlaIII	CATG	4 cut(s)	232, 341, 506, 968
NlaIV	GGNNCC	1 cut(s)	264
NmeAIII	GCCGAG	2 cut(s)	282, 860
PagI	TCATGA	1 cut(s)	502
PciSI	GCTCTTC	1 cut(s)	636
PfeI	GAWTC	4 cut(s)	99, 394, 668, 678
PflFI	GACNNNGTC	1 cut(s)	947
PflMI	CCANNNNNTGG	1 cut(s)	794
PkrI	GCNGC	4 cut(s)	68, 404, 420, 520
PleI	GAGTC	1 cut(s)	280
PpsI	GAGTC	1 cut(s)	280
Psp124BI	GAGCTC	2 cut(s)	90, 303
Psp1406I	AACGTT	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	923
PspGI	CCWGG	1 cut(s)	923
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	2 cut(s)	459, 823
PsuI	RGATCY	1 cut(s)	262
PsyI	GACNNNGTC	1 cut(s)	947
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	3 cut(s)	50, 146, 600
RsaNI	GTAC	3 cut(s)	49, 145, 599
RseI	CAYNNNNRTG	1 cut(s)	749
SacI	GAGCTC	2 cut(s)	90, 303
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	3 cut(s)	342, 390, 704
SatI	GCNGC	4 cut(s)	67, 403, 419, 519
Sau3AI	GATC	7 cut(s)	262, 370, 451, 760, 801, 844, 913
Sau96I	GGNCC	2 cut(s)	459, 823
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	925
SduI	GDGCHC	3 cut(s)	90, 303, 715
SfaNI	GCATC	1 cut(s)	570
SfcI	CTRYAG	1 cut(s)	730
SinI	GGWCC	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	749
SmlI	CTYRAG	2 cut(s)	89, 389
SmoI	CTYRAG	2 cut(s)	89, 389
Sse9I	AATT	7 cut(s)	167, 221, 353, 575, 716, 772, 919
SsiI	CCGC	5 cut(s)	39, 66, 403, 527, 887
SspMI	CTAG	3 cut(s)	635, 698, 831
SstI	GAGCTC	2 cut(s)	90, 303
StyD4I	CCNGG	1 cut(s)	923
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	7 cut(s)	28, 55, 79, 118, 658, 734, 842
TaiI	ACGT	2 cut(s)	23, 961
TaqI	TCGA	2 cut(s)	58, 270
TaqII	GACCGA	1 cut(s)	447
TasI	AATT	7 cut(s)	167, 221, 353, 575, 716, 772, 919
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	2 cut(s)	69, 405
TfiI	GAWTC	4 cut(s)	99, 394, 668, 678
Tru1I	TTAA	3 cut(s)	342, 390, 704
Tru9I	TTAA	3 cut(s)	342, 390, 704
TscAI	CASTG	3 cut(s)	82, 631, 847
TseI	GCWGC	2 cut(s)	418, 518
TspDTI	ATGAA	2 cut(s)	491, 797
TspRI	CASTG	3 cut(s)	82, 631, 847
Tth111I	GACNNNGTC	1 cut(s)	947
Van91I	CCANNNNNTGG	1 cut(s)	794
Vha464I	CTTAAG	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	459
XapI	RAATTY	1 cut(s)	772
XbaI	TCTAGA	1 cut(s)	634
XspI	CTAG	3 cut(s)	635, 698, 831
ZraI	GACGTC	1 cut(s)	959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.