Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009260

Physical Location & Seq

Genomic Coordinates Reverse (-)

30601085 .. 30601703

Gene Structure 619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1239500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGATAATTATATACCTATTTTGTTCGCACGCACAAAGTGTGCTATGTGCTAGTATATTTGTAAAAGAAGAAAAAGCAAATTGTTGGGGGCAATGGCAGGAGCAGCAGGAGAAGGCTCAGGCTTTGAGATTGCCCAAGATGAAGCTGTTGCGATTAAAGATAAGTATGCCAATAAGCAGAAGGCGTGTTGATCAATACAAGATTGAACTTCGAAATCCATGCCGGCAAGGAAAGAAACTGCTTGTGCTGGATATCGACTACACTCTGTTTGATCACCGGTACCTGCTTCAACTTATGCGGCCTTTTCTTCACGATTTTCTTACAGCTGCTTACGCGGAATATGATATCGGTCTGCAACCAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF ubiquitin

Protein Analysis

122

Amino Acids

14.36

Weight (kDa)

9.27

Isoelectric Point (pI)

58.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06599
fragaria_vesca	FvH4_1g28920 FvH4_5g28710 FvH4_5g28710 FvH4_6g22010 FvH4_7g16160 FvH4_7g16790
malus_domestica	MD08G1239400.v1.1 MD08G1239500.v1.1 MD15G1431000.v1.1
prunus_persica	Prupe.1G576000_v2.0.a1
pyrus_communis	pycom08g20770
rosa_chinensis	RchiOBHm_Chr7g0220871
rosa_laevigata	RLG00000002196
rosa_multiflora	Rmu_ssc0000286.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238920
rosa_rugosa	Rorug07G0198100
rosa_samantha	Rh7AG338200 Rh7BG329000 Rh7CG356300 Rh7DG337100
rosa_wichuraiana	Rw6G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	291
Acc65I	GGTACC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	279
AccII	CGCG	1 cut(s)	335
AciI	CCGC	2 cut(s)	298, 335
AdeI	CACNNNGTG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	281
AgeI	ACCGGT	1 cut(s)	276
AgsI	TTSAA	2 cut(s)	206, 290
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	2 cut(s)	145, 326
AluI	AGCT	2 cut(s)	145, 326
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	2 cut(s)	103, 326
AsiGI	ACCGGT	1 cut(s)	276
Asp718I	GGTACC	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	266
AsuII	TTCGAA	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	115, 313
BcgI	CGANNNNNNTGC	2 cut(s)	201, 235
BciT130I	CCWGG	1 cut(s)	360
BclI	TGATCA	2 cut(s)	190, 271
BfaI	CTAG	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	291
BisI	GCNGC	3 cut(s)	104, 299, 327
BlsI	GCNGC	3 cut(s)	105, 300, 328
Bme1390I	CCNGG	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	211
BsaWI	WCCGGW	1 cut(s)	276
Bse118I	RCCGGY	2 cut(s)	222, 276
Bse3DI	GCAATG	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	360
BseMI	GCAATG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	115, 313
Bsh1236I	CGCG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	301
BshNI	GGYRCC	1 cut(s)	279
BshTI	ACCGGT	1 cut(s)	276
BsiSI	CCGG	2 cut(s)	223, 277
BsnI	GGCC	1 cut(s)	301
Bsp119I	TTCGAA	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	190, 271
BspACI	CCGC	2 cut(s)	298, 335
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	1 cut(s)	281
BspMI	ACCTGC	1 cut(s)	291
BspT104I	TTCGAA	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	98
BsrFI	RCCGGY	2 cut(s)	222, 276
BssAI	RCCGGY	2 cut(s)	222, 276
BssMI	GATC	2 cut(s)	190, 271
Bst2UI	CCWGG	1 cut(s)	360
BstBI	TTCGAA	1 cut(s)	211
BstC8I	GCNNGC	2 cut(s)	30, 224
BstDEI	CTNAG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	335
BstKTI	GATC	2 cut(s)	193, 274
BstMBI	GATC	2 cut(s)	190, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 332
BstNI	CCWGG	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	358
BstUI	CGCG	1 cut(s)	335
BstV1I	GCAGC	2 cut(s)	115, 313
BsuRI	GGCC	1 cut(s)	301
BveI	ACCTGC	1 cut(s)	291
Cac8I	GCNNGC	2 cut(s)	30, 224
Cfr10I	RCCGGY	2 cut(s)	222, 276
CsiI	ACCWGGT	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	280
CspAI	ACCGGT	1 cut(s)	276
CviAII	CATG	1 cut(s)	219
CviJI	RGCY	5 cut(s)	116, 122, 145, 301, 326
CviKI_1	RGCY	5 cut(s)	116, 122, 145, 301, 326
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	192, 273
DpnII	GATC	2 cut(s)	190, 271
DraIII	CACNNNGTG	1 cut(s)	38
Eco32I	GATATC	2 cut(s)	253, 346
EcoRII	CCWGG	1 cut(s)	358
EcoRV	GATATC	2 cut(s)	253, 346
FaeI	CATG	1 cut(s)	222
FaiI	YATR	8 cut(s)	11, 13, 46, 56, 167, 220, 296, 342
FatI	CATG	1 cut(s)	218
FbaI	TGATCA	2 cut(s)	190, 271
Fnu4HI	GCNGC	3 cut(s)	104, 299, 327
Fsp4HI	GCNGC	3 cut(s)	104, 299, 327
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	3 cut(s)	104, 299, 327
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	2 cut(s)	223, 277
Hin1II	CATG	1 cut(s)	222
HpaII	CCGG	2 cut(s)	223, 277
HphI	GGTGA	1 cut(s)	266
Hpy188III	TCNNGA	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	106, 174
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 332
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	222
KpnI	GGTACC	1 cut(s)	283
KroI	GCCGGC	1 cut(s)	222
KroNI	GCCGGC	1 cut(s)	224
Ksp22I	TGATCA	2 cut(s)	190, 271
Kzo9I	GATC	2 cut(s)	190, 271
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	8 cut(s)	83, 92, 104, 233, 236, 290, 296, 345
Lsp1109I	GCAGC	2 cut(s)	115, 313
MabI	ACCWGGT	1 cut(s)	358
MaeI	CTAG	1 cut(s)	51
MalI	GATC	2 cut(s)	192, 273
MboI	GATC	2 cut(s)	190, 271
MboII	GAAGA	2 cut(s)	80, 299
MluCI	AATT	2 cut(s)	6, 79
MroNI	GCCGGC	1 cut(s)	222
MseI	TTAA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	2 cut(s)	223, 277
MspR9I	CCNGG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	103, 332
NaeI	GCCGGC	1 cut(s)	224
NdeII	GATC	2 cut(s)	190, 271
NgoMIV	GCCGGC	1 cut(s)	222
NlaIII	CATG	1 cut(s)	222
NlaIV	GGNNCC	1 cut(s)	281
NspV	TTCGAA	1 cut(s)	211
PdiI	GCCGGC	1 cut(s)	224
PinAI	ACCGGT	1 cut(s)	276
PkrI	GCNGC	3 cut(s)	105, 300, 328
Psp6I	CCWGG	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	3 cut(s)	104, 299, 327
Sau3AI	GATC	2 cut(s)	190, 271
ScrFI	CCNGG	1 cut(s)	360
SetI	ASST	5 cut(s)	18, 147, 285, 328, 364
SexAI	ACCWGGT	1 cut(s)	358
SfuI	TTCGAA	1 cut(s)	211
Sse9I	AATT	2 cut(s)	6, 79
SsiI	CCGC	2 cut(s)	298, 335
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	358
TaqI	TCGA	2 cut(s)	211, 255
TaqII	GACCGA	1 cut(s)	338
TasI	AATT	2 cut(s)	6, 79
TauI	GCSGC	1 cut(s)	301
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TseI	GCWGC	2 cut(s)	103, 326
TspDTI	ATGAA	1 cut(s)	155
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.