Ubiquitin-like domain-containing CTD
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G06599 |
| fragaria_vesca | FvH4_1g28920 FvH4_5g28710 FvH4_5g28710 FvH4_6g22010 FvH4_7g16160 FvH4_7g16790 |
| malus_domestica | MD08G1239400.v1.1 MD08G1239500.v1.1 MD15G1431000.v1.1 |
| prunus_persica | Prupe.1G576000_v2.0.a1 |
| pyrus_communis | pycom08g20770 |
| rosa_chinensis | RchiOBHm_Chr7g0220871 |
| rosa_laevigata | RLG00000002196 |
| rosa_multiflora | Rmu_ssc0000286.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00238920 |
| rosa_rugosa | Rorug07G0198100 |
| rosa_samantha | Rh7AG338200 Rh7BG329000 Rh7CG356300 Rh7DG337100 |
| rosa_wichuraiana | Rw6G016540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 985 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 818 |
| AccBSI | CCGCTC | 1 cut(s) | 63 |
| AccI | GTMKAC | 1 cut(s) | 294 |
| AccII | CGCG | 1 cut(s) | 697 |
| AciI | CCGC | 6 cut(s) | 5, 63, 90, 427, 500, 911 |
| AcoI | YGGCCR | 1 cut(s) | 328 |
| AcsI | RAATTY | 1 cut(s) | 796 |
| AcyI | GRCGYC | 2 cut(s) | 204, 982 |
| AfaI | GTAC | 3 cut(s) | 74, 262, 624 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 337, 818 |
| AgsI | TTSAA | 4 cut(s) | 232, 506, 604, 762 |
| Alw21I | GWGCWC | 4 cut(s) | 114, 327, 414, 932 |
| Alw26I | GTCTC | 1 cut(s) | 855 |
| AoxI | GGCC | 2 cut(s) | 328, 846 |
| ApeKI | GCWGC | 2 cut(s) | 442, 542 |
| ApoI | RAATTY | 1 cut(s) | 796 |
| AspLEI | GCGC | 1 cut(s) | 120 |
| AspS9I | GGNCC | 3 cut(s) | 286, 483, 847 |
| AsuHPI | GGTGA | 1 cut(s) | 127 |
| AvaII | GGWCC | 2 cut(s) | 286, 483 |
| BanII | GRGCYC | 4 cut(s) | 114, 327, 414, 739 |
| Bbv12I | GWGCWC | 4 cut(s) | 114, 327, 414, 932 |
| BbvI | GCAGC | 2 cut(s) | 429, 529 |
| BccI | CCATC | 1 cut(s) | 601 |
| BceAI | ACGGC | 1 cut(s) | 191 |
| BclI | TGATCA | 4 cut(s) | 394, 475, 868, 937 |
| BcoDI | GTCTC | 1 cut(s) | 855 |
| BfaI | CTAG | 3 cut(s) | 659, 722, 855 |
| BfmI | CTRYAG | 1 cut(s) | 754 |
| BfoI | RGCGCY | 1 cut(s) | 121 |
| BisI | GCNGC | 5 cut(s) | 6, 91, 427, 443, 543 |
| BlpI | GCTNAGC | 1 cut(s) | 47 |
| BlsI | GCNGC | 5 cut(s) | 7, 92, 428, 444, 544 |
| Bme18I | GGWCC | 2 cut(s) | 286, 483 |
| BmgT120I | GGNCC | 3 cut(s) | 286, 483, 847 |
| BmiI | GGNNCC | 1 cut(s) | 288 |
| BmsI | GCATC | 2 cut(s) | 60, 594 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 47 |
| BpuEI | CTTGAG | 2 cut(s) | 98, 398 |
| BsaBI | GATNNNNATC | 1 cut(s) | 360 |
| BsaHI | GRCGYC | 2 cut(s) | 204, 982 |
| BsaJI | CCNNGG | 1 cut(s) | 430 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 337, 818 |
| Bse3DI | GCAATG | 2 cut(s) | 678, 906 |
| Bse8I | GATNNNNATC | 1 cut(s) | 360 |
| BseDI | CCNNGG | 1 cut(s) | 430 |
| BseGI | GGATG | 1 cut(s) | 277 |
| BseJI | GATNNNNATC | 1 cut(s) | 360 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 337, 818 |
| BseMI | GCAATG | 2 cut(s) | 678, 906 |
| BseMII | CTCAG | 3 cut(s) | 38, 738, 954 |
| BseRI | GAGGAG | 4 cut(s) | 47, 50, 208, 397 |
| BseXI | GCAGC | 2 cut(s) | 429, 529 |
| Bsh1236I | CGCG | 1 cut(s) | 697 |
| BshFI | GGCC | 2 cut(s) | 330, 848 |
| BsiHKAI | GWGCWC | 4 cut(s) | 114, 327, 414, 932 |
| BslFI | GGGAC | 1 cut(s) | 624 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 337, 818 |
| BsmAI | GTCTC | 1 cut(s) | 855 |
| BsmFI | GGGAC | 1 cut(s) | 624 |
| BsnI | GGCC | 2 cut(s) | 330, 848 |
| Bsp1286I | GDGCHC | 5 cut(s) | 114, 327, 414, 739, 932 |
| Bsp143I | GATC | 5 cut(s) | 394, 475, 784, 868, 937 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 47 |
| BspACI | CCGC | 6 cut(s) | 5, 63, 90, 427, 500, 911 |
| BspANI | GGCC | 2 cut(s) | 330, 848 |
| BspCNI | CTCAG | 3 cut(s) | 39, 739, 955 |
| BspFNI | CGCG | 1 cut(s) | 697 |
| BspHI | TCATGA | 1 cut(s) | 526 |
| BspLI | GGNNCC | 1 cut(s) | 288 |
| BspQI | GCTCTTC | 1 cut(s) | 660 |
| BsrBI | CCGCTC | 1 cut(s) | 63 |
| BsrDI | GCAATG | 2 cut(s) | 678, 906 |
| BssECI | CCNNGG | 1 cut(s) | 430 |
| BssMI | GATC | 5 cut(s) | 394, 475, 784, 868, 937 |
| BssNI | GRCGYC | 2 cut(s) | 204, 982 |
| BssT1I | CCWWGG | 1 cut(s) | 430 |
| Bst4CI | ACNGT | 4 cut(s) | 79, 142, 682, 758 |
| Bst6I | CTCTTC | 1 cut(s) | 660 |
| BstACI | GRCGYC | 2 cut(s) | 204, 982 |
| BstC8I | GCNNGC | 3 cut(s) | 110, 716, 903 |
| BstDEI | CTNAG | 3 cut(s) | 47, 747, 963 |
| BstF5I | GGATG | 1 cut(s) | 277 |
| BstFNI | CGCG | 1 cut(s) | 697 |
| BstH2I | RGCGCY | 1 cut(s) | 121 |
| BstHHI | GCGC | 1 cut(s) | 120 |
| BstKTI | GATC | 5 cut(s) | 397, 478, 787, 871, 940 |
| BstMAI | GTCTC | 1 cut(s) | 855 |
| BstMBI | GATC | 5 cut(s) | 394, 475, 784, 868, 937 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 126, 203, 448, 548 |
| BstSFI | CTRYAG | 1 cut(s) | 754 |
| BstUI | CGCG | 1 cut(s) | 697 |
| BstV1I | GCAGC | 2 cut(s) | 429, 529 |
| BsuRI | GGCC | 2 cut(s) | 330, 848 |
| BtsCI | GGATG | 1 cut(s) | 277 |
| BtsI | GCAGTG | 1 cut(s) | 648 |
| BtsIMutI | CAGTG | 2 cut(s) | 648, 864 |
| Cac8I | GCNNGC | 3 cut(s) | 110, 716, 903 |
| CciI | TCATGA | 1 cut(s) | 526 |
| CfoI | GCGC | 1 cut(s) | 120 |
| Cfr13I | GGNCC | 3 cut(s) | 286, 483, 847 |
| CseI | GACGC | 2 cut(s) | 212, 686 |
| Csp6I | GTAC | 3 cut(s) | 73, 261, 623 |
| CviAII | CATG | 5 cut(s) | 253, 511, 527, 948, 989 |
| CviQI | GTAC | 3 cut(s) | 73, 261, 623 |
| DdeI | CTNAG | 3 cut(s) | 47, 747, 963 |
| DpnI | GATC | 5 cut(s) | 396, 477, 786, 870, 939 |
| DpnII | GATC | 5 cut(s) | 394, 475, 784, 868, 937 |
| EaeI | YGGCCR | 1 cut(s) | 328 |
| Eam1104I | CTCTTC | 1 cut(s) | 660 |
| EarI | CTCTTC | 1 cut(s) | 660 |
| Ecl136II | GAGCTC | 3 cut(s) | 112, 325, 412 |
| Eco130I | CCWWGG | 1 cut(s) | 430 |
| Eco24I | GRGCYC | 4 cut(s) | 114, 327, 414, 739 |
| Eco32I | GATATC | 1 cut(s) | 349 |
| Eco47I | GGWCC | 2 cut(s) | 286, 483 |
| Eco53kI | GAGCTC | 3 cut(s) | 112, 325, 412 |
| EcoICRI | GAGCTC | 3 cut(s) | 112, 325, 412 |
| EcoRV | GATATC | 1 cut(s) | 349 |
| EcoT14I | CCWWGG | 1 cut(s) | 430 |
| EcoT38I | GRGCYC | 4 cut(s) | 114, 327, 414, 739 |
| ErhI | CCWWGG | 1 cut(s) | 430 |
| FaeI | CATG | 5 cut(s) | 256, 514, 530, 951, 992 |
| FaqI | GGGAC | 1 cut(s) | 624 |
| FatI | CATG | 5 cut(s) | 252, 510, 526, 947, 988 |
| FauI | CCCGC | 2 cut(s) | 56, 507 |
| FbaI | TGATCA | 4 cut(s) | 394, 475, 868, 937 |
| FblI | GTMKAC | 1 cut(s) | 294 |
| Fnu4HI | GCNGC | 5 cut(s) | 6, 91, 427, 443, 543 |
| FokI | GGATG | 1 cut(s) | 284 |
| FriOI | GRGCYC | 4 cut(s) | 114, 327, 414, 739 |
| Fsp4HI | GCNGC | 5 cut(s) | 6, 91, 427, 443, 543 |
| FspBI | CTAG | 3 cut(s) | 659, 722, 855 |
| GlaI | GCGC | 1 cut(s) | 119 |
| GluI | GCNGC | 5 cut(s) | 6, 91, 427, 443, 543 |
| HaeII | RGCGCY | 1 cut(s) | 121 |
| HaeIII | GGCC | 2 cut(s) | 330, 848 |
| HgaI | GACGC | 2 cut(s) | 212, 686 |
| HhaI | GCGC | 1 cut(s) | 120 |
| Hin1I | GRCGYC | 2 cut(s) | 204, 982 |
| Hin1II | CATG | 5 cut(s) | 256, 514, 530, 951, 992 |
| Hin6I | GCGC | 1 cut(s) | 118 |
| HinP1I | GCGC | 1 cut(s) | 118 |
| HincII | GTYRAC | 1 cut(s) | 295 |
| HindII | GTYRAC | 1 cut(s) | 295 |
| HindIII | AAGCTT | 1 cut(s) | 161 |
| HinfI | GANTC | 5 cut(s) | 123, 296, 418, 692, 702 |
| HphI | GGTGA | 1 cut(s) | 127 |
| Hpy166II | GTNNAC | 4 cut(s) | 75, 286, 295, 486 |
| Hpy188I | TCNGA | 1 cut(s) | 691 |
| Hpy188III | TCNNGA | 6 cut(s) | 302, 415, 527, 659, 841, 872 |
| Hpy8I | GTNNAC | 4 cut(s) | 75, 286, 295, 486 |
| Hpy99I | CGWCG | 6 cut(s) | 98, 203, 206, 296, 702, 987 |
| HpyAV | CCTTC | 3 cut(s) | 61, 195, 838 |
| HpyCH4III | ACNGT | 4 cut(s) | 79, 142, 682, 758 |
| HpyCH4IV | ACGT | 1 cut(s) | 982 |
| HpyCH4V | TGCA | 2 cut(s) | 578, 714 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 126, 203, 448, 548 |
| HpyF3I | CTNAG | 3 cut(s) | 47, 747, 963 |
| HpySE526I | ACGT | 1 cut(s) | 982 |
| Hsp92I | GRCGYC | 2 cut(s) | 204, 982 |
| Hsp92II | CATG | 5 cut(s) | 256, 514, 530, 951, 992 |
| HspAI | GCGC | 1 cut(s) | 118 |
| Ksp22I | TGATCA | 4 cut(s) | 394, 475, 868, 937 |
| Kzo9I | GATC | 5 cut(s) | 394, 475, 784, 868, 937 |
| LguI | GCTCTTC | 1 cut(s) | 660 |
| LmnI | GCTCC | 3 cut(s) | 37, 60, 874 |
| Lsp1109I | GCAGC | 2 cut(s) | 429, 529 |
| LweI | GCATC | 2 cut(s) | 60, 594 |
| MaeI | CTAG | 3 cut(s) | 659, 722, 855 |
| MaeII | ACGT | 1 cut(s) | 982 |
| MalI | GATC | 5 cut(s) | 396, 477, 786, 870, 939 |
| MbiI | CCGCTC | 1 cut(s) | 63 |
| MboI | GATC | 5 cut(s) | 394, 475, 784, 868, 937 |
| MboII | GAAGA | 4 cut(s) | 515, 616, 647, 804 |
| MhlI | GDGCHC | 5 cut(s) | 114, 327, 414, 739, 932 |
| MluCI | AATT | 5 cut(s) | 245, 377, 740, 796, 943 |
| MlyI | GAGTC | 1 cut(s) | 290 |
| MseI | TTAA | 2 cut(s) | 627, 728 |
| MspA1I | CMGCKG | 1 cut(s) | 542 |
| MvnI | CGCG | 1 cut(s) | 697 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 126, 203, 448, 548 |
| NdeII | GATC | 5 cut(s) | 394, 475, 784, 868, 937 |
| NlaIII | CATG | 5 cut(s) | 256, 514, 530, 951, 992 |
| NlaIV | GGNNCC | 1 cut(s) | 288 |
| NmeAIII | GCCGAG | 2 cut(s) | 306, 884 |
| PagI | TCATGA | 1 cut(s) | 526 |
| PciSI | GCTCTTC | 1 cut(s) | 660 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 288, 333 |
| PfeI | GAWTC | 4 cut(s) | 123, 418, 692, 702 |
| PflFI | GACNNNGTC | 2 cut(s) | 290, 971 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 818 |
| PkrI | GCNGC | 5 cut(s) | 7, 92, 428, 444, 544 |
| PleI | GAGTC | 1 cut(s) | 290 |
| PpsI | GAGTC | 1 cut(s) | 290 |
| Psp124BI | GAGCTC | 3 cut(s) | 114, 327, 414 |
| PspN4I | GGNNCC | 1 cut(s) | 288 |
| PspPI | GGNCC | 3 cut(s) | 286, 483, 847 |
| PsyI | GACNNNGTC | 2 cut(s) | 290, 971 |
| PvuII | CAGCTG | 1 cut(s) | 542 |
| RsaI | GTAC | 3 cut(s) | 74, 262, 624 |
| RsaNI | GTAC | 3 cut(s) | 73, 261, 623 |
| SacI | GAGCTC | 3 cut(s) | 114, 327, 414 |
| SalI | GTCGAC | 1 cut(s) | 293 |
| SapI | GCTCTTC | 1 cut(s) | 660 |
| SaqAI | TTAA | 2 cut(s) | 627, 728 |
| SatI | GCNGC | 5 cut(s) | 6, 91, 427, 443, 543 |
| Sau3AI | GATC | 5 cut(s) | 394, 475, 784, 868, 937 |
| Sau96I | GGNCC | 3 cut(s) | 286, 483, 847 |
| SchI | GAGTC | 1 cut(s) | 290 |
| SduI | GDGCHC | 5 cut(s) | 114, 327, 414, 739, 932 |
| SfaNI | GCATC | 2 cut(s) | 60, 594 |
| SfcI | CTRYAG | 1 cut(s) | 754 |
| SinI | GGWCC | 2 cut(s) | 286, 483 |
| SmlI | CTYRAG | 2 cut(s) | 113, 413 |
| SmoI | CTYRAG | 2 cut(s) | 113, 413 |
| Sse9I | AATT | 5 cut(s) | 245, 377, 740, 796, 943 |
| SsiI | CCGC | 6 cut(s) | 5, 63, 90, 427, 500, 911 |
| SspMI | CTAG | 3 cut(s) | 659, 722, 855 |
| SstI | GAGCTC | 3 cut(s) | 114, 327, 414 |
| StyI | CCWWGG | 1 cut(s) | 430 |
| TaaI | ACNGT | 4 cut(s) | 79, 142, 682, 758 |
| TaiI | ACGT | 1 cut(s) | 985 |
| TaqI | TCGA | 4 cut(s) | 82, 294, 700, 918 |
| TaqII | GACCGA | 1 cut(s) | 471 |
| TasI | AATT | 5 cut(s) | 245, 377, 740, 796, 943 |
| TatI | WGTACW | 1 cut(s) | 72 |
| TauI | GCSGC | 3 cut(s) | 8, 93, 429 |
| TfiI | GAWTC | 4 cut(s) | 123, 418, 692, 702 |
| Tru1I | TTAA | 2 cut(s) | 627, 728 |
| Tru9I | TTAA | 2 cut(s) | 627, 728 |
| TscAI | CASTG | 2 cut(s) | 655, 871 |
| TseI | GCWGC | 2 cut(s) | 442, 542 |
| TspDTI | ATGAA | 3 cut(s) | 515, 821, 936 |
| TspGWI | ACGGA | 1 cut(s) | 411 |
| TspRI | CASTG | 2 cut(s) | 655, 871 |
| Tth111I | GACNNNGTC | 2 cut(s) | 290, 971 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 818 |
| VpaK11BI | GGWCC | 2 cut(s) | 286, 483 |
| XapI | RAATTY | 1 cut(s) | 796 |
| XbaI | TCTAGA | 1 cut(s) | 658 |
| XmiI | GTMKAC | 1 cut(s) | 294 |
| XspI | CTAG | 3 cut(s) | 659, 722, 855 |
| ZraI | GACGTC | 1 cut(s) | 983 |