Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009260

Physical Location & Seq

Genomic Coordinates Reverse (-)

15686431 .. 15697575

Gene Structure 11145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCAGCAGGAAGCTCATCATCAAAGATGGGAGAAGAGCAGGAGGAGAGGAGCATCAAGTGGAGCGGGAAGGAGTACACGGTTAGATTATGCGGCGACGACACTTTGGGCGAGCTCAAGCGCCGAATCTGCCAACTCACCACCGTCCTCCCCAAACGCCAAAAGCTTCTCTACCCCAAACTCCTCCCTTCCAAACTCGCCGACGACGCCGTTTTGCTCTCCTCTCTCCCTTTCAAGTCCTCTCTCAAATTGACCATGATTGGTACTATAGAGGATGATATTATCGTGGACCCCGTCGACTCTCCTGACATTGTTGATGACTTTGAGCTCGGCCAAGATGAGGCTGTTGATATCAAAGATAATCATCTCAATAACCAGAAATTGAGGAGGCAGAGGATGGGGGAGGATTTGATCATGAAAAGGCAGATGTCTGCTGATTCAAATAATGTGACTGATAACCATCATAGAACGGATAGAGCTCAGACAAGAAAGCGTCTATTTGAAGATAGAGATCTCCAGCTTGTAGAAAATAATGGATCGAAAAAGAGGAACGAACATGTGGTGGGCAAAGGATGGACTTCAATCACTCTCTGCGGTGAAGCCAATAATGCAGCAAGATCTCTCTCCTTTCTCTTTCTGCCTTTTACTCGACTTCTCTCTCTCCTTATTCTTCGACCTCTGATTCCGGTGACGTCGCCGCCGCACACCTCTCTTTCTCTCTCTGGAACATGTGATGGTCGACCGAGACGGTGGCTCCGCCGTGCTCAAGGACACCGCAACGGCAATCTTTACATCTGCGTGATCCAAAAAGTTGACGCCGACGATCTGGATCTCAATCTAATCTGGTGGTCTTCAAAGGGTGGTTTTGGCTTGAGGTTTTGGTTTGAAGGTATCTACCGTGGCGGCTTGTACATGGAGGGGATCGTCATGAAGAATCAAGGGTCGCCAGCAGCAGAAGCATCGTCTGAGAGTTCGATGGAGTATGGGGCTTGGCGGTGCAATTTCAGATTTGTGGTGGTTGTGAGTAGGCAACATGTGGTAATTCCCGACGGCAGGTCGACAGTGCTACTATTGGGACGTGATGGCGGAGAAAACAAGCGTCAATGGTGGGTCACTCTTCGGTTGGGCCTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031974 GO:0031981 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF ubiquitin

Protein Analysis

379

Amino Acids

42.73

Weight (kDa)

9.06

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06599
fragaria_vesca	FvH4_1g28920 FvH4_5g28710 FvH4_5g28710 FvH4_6g22010 FvH4_7g16160 FvH4_7g16790
malus_domestica	MD08G1239400.v1.1 MD08G1239500.v1.1 MD15G1431000.v1.1
prunus_persica	Prupe.1G576000_v2.0.a1
pyrus_communis	pycom08g20770
rosa_chinensis	RchiOBHm_Chr7g0220871
rosa_laevigata	RLG00000002196
rosa_multiflora	Rmu_ssc0000286.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238920
rosa_rugosa	Rorug07G0198100
rosa_samantha	Rh7AG338200 Rh7BG329000 Rh7CG356300 Rh7DG337100
rosa_wichuraiana	Rw6G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	695
Acc36I	ACCTGC	1 cut(s)	1044
AccBSI	CCGCTC	1 cut(s)	66
AccI	GTMKAC	3 cut(s)	297, 739, 1058
AclWI	GGATC	4 cut(s)	544, 796, 837, 929
AcoI	YGGCCR	1 cut(s)	331
AcyI	GRCGYC	3 cut(s)	207, 692, 816
AfaI	GTAC	3 cut(s)	77, 265, 911
AfiI	CCNNNNNNNGG	2 cut(s)	340, 1053
AflIII	ACRYGT	3 cut(s)	556, 728, 1033
AgsI	TTSAA	6 cut(s)	235, 441, 503, 582, 855, 887
AhdI	GACNNNNNGTC	1 cut(s)	1054
AjiI	CACGTC	1 cut(s)	1079
AjnI	CCWGG	1 cut(s)	1128
AluBI	AGCT	6 cut(s)	15, 115, 166, 328, 479, 520
AluI	AGCT	6 cut(s)	15, 115, 166, 328, 479, 520
Alw21I	GWGCWC	4 cut(s)	117, 330, 481, 766
Alw26I	GTCTC	1 cut(s)	739
AlwI	GGATC	4 cut(s)	544, 796, 837, 929
AoxI	GGCC	2 cut(s)	331, 1126
ApeKI	GCWGC	3 cut(s)	5, 611, 950
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	289, 1126
AsuHPI	GGTGA	3 cut(s)	130, 608, 700
AvaII	GGWCC	1 cut(s)	289
BanII	GRGCYC	3 cut(s)	117, 330, 481
BbsI	GAAGAC	1 cut(s)	843
Bbv12I	GWGCWC	4 cut(s)	117, 330, 481, 766
BbvI	GCAGC	3 cut(s)	17, 623, 962
BccI	CCATC	7 cut(s)	22, 391, 468, 567, 728, 970, 1076
BceAI	ACGGC	4 cut(s)	194, 744, 796, 1066
BcgI	CGANNNNNNTGC	2 cut(s)	942, 976
BciT130I	CCWGG	1 cut(s)	1130
BclI	TGATCA	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	739
BfaI	CTAG	1 cut(s)	1135
BfmI	CTRYAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	124
BfuAI	ACCTGC	1 cut(s)	1044
BglII	AGATCT	2 cut(s)	511, 617
BisI	GCNGC	7 cut(s)	6, 94, 612, 698, 701, 904, 951
BlsI	GCNGC	7 cut(s)	7, 95, 613, 699, 702, 905, 952
Bme1390I	CCNGG	1 cut(s)	1130
Bme18I	GGWCC	1 cut(s)	289
BmeRI	GACNNNNNGTC	1 cut(s)	1054
BmgBI	CACGTC	1 cut(s)	1079
BmgT120I	GGNCC	2 cut(s)	289, 1126
BmiI	GGNNCC	2 cut(s)	291, 755
BmrFI	CCNGG	1 cut(s)	1130
BmsI	GCATC	2 cut(s)	63, 968
BpiI	GAAGAC	1 cut(s)	843
BpmI	CTGGAG	1 cut(s)	500
BpuEI	CTTGAG	3 cut(s)	101, 750, 892
BsaBI	GATNNNNATC	5 cut(s)	363, 459, 510, 828, 834
BsaHI	GRCGYC	3 cut(s)	207, 692, 816
BsaJI	CCNNGG	2 cut(s)	898, 1129
BsaWI	WCCGGW	1 cut(s)	685
BsaXI	ACNNNNNCTCC	2 cut(s)	738, 768
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 1053
Bse8I	GATNNNNATC	5 cut(s)	363, 459, 510, 828, 834
BseBI	CCWGG	1 cut(s)	1130
BseDI	CCNNGG	2 cut(s)	898, 1129
BseGI	GGATG	3 cut(s)	280, 402, 578
BseJI	GATNNNNATC	5 cut(s)	363, 459, 510, 828, 834
BseLI	CCNNNNNNNGG	2 cut(s)	340, 1053
BseMII	CTCAG	2 cut(s)	494, 957
BseRI	GAGGAG	5 cut(s)	59, 64, 173, 211, 400
BseXI	GCAGC	3 cut(s)	17, 623, 962
Bsh1285I	CGRYCG	1 cut(s)	743
BshFI	GGCC	2 cut(s)	333, 1128
BsiEI	CGRYCG	1 cut(s)	743
BsiHKAI	GWGCWC	4 cut(s)	117, 330, 481, 766
BsiSI	CCGG	1 cut(s)	686
BslFI	GGGAC	1 cut(s)	1089
BslI	CCNNNNNNNGG	2 cut(s)	340, 1053
BsmAI	GTCTC	1 cut(s)	739
BsmBI	CGTCTC	1 cut(s)	739
BsmFI	GGGAC	1 cut(s)	1089
BsnI	GGCC	2 cut(s)	333, 1128
Bsp1286I	GDGCHC	4 cut(s)	117, 330, 481, 766
Bsp1407I	TGTACA	1 cut(s)	909
Bsp143I	GATC	8 cut(s)	411, 511, 536, 617, 801, 823, 829, 921
BspANI	GGCC	2 cut(s)	333, 1128
BspCNI	CTCAG	2 cut(s)	493, 958
BspHI	TCATGA	2 cut(s)	414, 927
BspLI	GGNNCC	2 cut(s)	291, 755
BspMI	ACCTGC	1 cut(s)	1044
BspPI	GGATC	4 cut(s)	544, 796, 837, 929
BspQI	GCTCTTC	1 cut(s)	30
BsrBI	CCGCTC	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	909
BssECI	CCNNGG	2 cut(s)	898, 1129
BssMI	GATC	8 cut(s)	411, 511, 536, 617, 801, 823, 829, 921
BssNI	GRCGYC	3 cut(s)	207, 692, 816
Bst2UI	CCWGG	1 cut(s)	1130
Bst4CI	ACNGT	5 cut(s)	82, 145, 750, 899, 1063
Bst6I	CTCTTC	2 cut(s)	30, 1122
BstACI	GRCGYC	3 cut(s)	207, 692, 816
BstAUI	TGTACA	1 cut(s)	909
BstC8I	GCNNGC	2 cut(s)	113, 948
BstDEI	CTNAG	2 cut(s)	480, 966
BstDSI	CCRYGG	1 cut(s)	898
BstF5I	GGATG	3 cut(s)	280, 402, 578
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	8 cut(s)	414, 514, 539, 620, 804, 826, 832, 924
BstMAI	GTCTC	1 cut(s)	739
BstMBI	GATC	8 cut(s)	411, 511, 536, 617, 801, 823, 829, 921
BstMCI	CGRYCG	1 cut(s)	743
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 206, 608, 956
BstNI	CCWGG	1 cut(s)	1130
BstNSI	RCATGY	3 cut(s)	560, 732, 1037
BstSCI	CCNGG	1 cut(s)	1128
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	3 cut(s)	17, 623, 962
BstV2I	GAAGAC	1 cut(s)	843
BstX2I	RGATCY	3 cut(s)	511, 617, 829
BstYI	RGATCY	3 cut(s)	511, 617, 829
BsuRI	GGCC	2 cut(s)	333, 1128
BtgI	CCRYGG	1 cut(s)	898
BtrI	CACGTC	1 cut(s)	1079
BtsCI	GGATG	3 cut(s)	280, 402, 578
BtsIMutI	CAGTG	1 cut(s)	1068
BveI	ACCTGC	1 cut(s)	1044
Cac8I	GCNNGC	2 cut(s)	113, 948
CciI	TCATGA	2 cut(s)	414, 927
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	289, 1126
CseI	GACGC	4 cut(s)	215, 482, 824, 1088
Csp6I	GTAC	3 cut(s)	76, 264, 910
CviAII	CATG	7 cut(s)	256, 415, 557, 729, 913, 928, 1034
CviQI	GTAC	3 cut(s)	76, 264, 910
DdeI	CTNAG	2 cut(s)	480, 966
DpnI	GATC	8 cut(s)	413, 513, 538, 619, 803, 825, 831, 923
DpnII	GATC	8 cut(s)	411, 511, 536, 617, 801, 823, 829, 921
DriI	GACNNNNNGTC	1 cut(s)	1054
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	30, 1122
Eam1105I	GACNNNNNGTC	1 cut(s)	1054
EarI	CTCTTC	2 cut(s)	30, 1122
EciI	GGCGGA	2 cut(s)	746, 1101
Ecl136II	GAGCTC	3 cut(s)	115, 328, 479
Eco24I	GRGCYC	3 cut(s)	117, 330, 481
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	289
Eco53kI	GAGCTC	3 cut(s)	115, 328, 479
EcoICRI	GAGCTC	3 cut(s)	115, 328, 479
EcoRII	CCWGG	1 cut(s)	1128
EcoRV	GATATC	1 cut(s)	352
EcoT38I	GRGCYC	3 cut(s)	117, 330, 481
Esp3I	CGTCTC	1 cut(s)	739
FaeI	CATG	7 cut(s)	259, 418, 560, 732, 916, 931, 1037
FaqI	GGGAC	1 cut(s)	1089
FatI	CATG	7 cut(s)	255, 414, 556, 728, 912, 927, 1033
FauI	CCCGC	1 cut(s)	59
FbaI	TGATCA	1 cut(s)	411
FblI	GTMKAC	3 cut(s)	297, 739, 1058
Fnu4HI	GCNGC	7 cut(s)	6, 94, 612, 698, 701, 904, 951
FokI	GGATG	3 cut(s)	287, 409, 585
FriOI	GRGCYC	3 cut(s)	117, 330, 481
Fsp4HI	GCNGC	7 cut(s)	6, 94, 612, 698, 701, 904, 951
FspBI	CTAG	1 cut(s)	1135
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	7 cut(s)	6, 94, 612, 698, 701, 904, 951
GsuI	CTGGAG	1 cut(s)	500
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	2 cut(s)	333, 1128
HapII	CCGG	1 cut(s)	686
HgaI	GACGC	4 cut(s)	215, 482, 824, 1088
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	3 cut(s)	207, 692, 816
Hin1II	CATG	7 cut(s)	259, 418, 560, 732, 916, 931, 1037
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	4 cut(s)	298, 740, 814, 1059
HindII	GTYRAC	4 cut(s)	298, 740, 814, 1059
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	5 cut(s)	126, 299, 437, 682, 934
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	3 cut(s)	130, 608, 700
Hpy166II	GTNNAC	6 cut(s)	78, 289, 298, 740, 814, 1059
Hpy188I	TCNGA	4 cut(s)	483, 681, 967, 1007
Hpy188III	TCNNGA	6 cut(s)	305, 415, 723, 827, 928, 1046
Hpy8I	GTNNAC	6 cut(s)	78, 289, 298, 740, 814, 1059
Hpy99I	CGWCG	7 cut(s)	101, 206, 209, 299, 697, 824, 1052
HpyAV	CCTTC	3 cut(s)	64, 198, 881
HpyCH4III	ACNGT	5 cut(s)	82, 145, 750, 899, 1063
HpyCH4IV	ACGT	2 cut(s)	692, 1078
HpyCH4V	TGCA	2 cut(s)	611, 999
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 206, 608, 956
HpyF3I	CTNAG	2 cut(s)	480, 966
HpySE526I	ACGT	2 cut(s)	692, 1078
Hsp92I	GRCGYC	3 cut(s)	207, 692, 816
Hsp92II	CATG	7 cut(s)	259, 418, 560, 732, 916, 931, 1037
HspAI	GCGC	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	8 cut(s)	411, 511, 536, 617, 801, 823, 829, 921
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	3 cut(s)	51, 63, 759
Lsp1109I	GCAGC	3 cut(s)	17, 623, 962
LweI	GCATC	2 cut(s)	63, 968
MaeI	CTAG	1 cut(s)	1135
MaeII	ACGT	2 cut(s)	692, 1078
MaeIII	GTNAC	3 cut(s)	448, 688, 1111
MalI	GATC	8 cut(s)	413, 513, 538, 619, 803, 825, 831, 923
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	8 cut(s)	411, 511, 536, 617, 801, 823, 829, 921
MboII	GAAGA	6 cut(s)	47, 515, 662, 843, 943, 1109
MflI	RGATCY	3 cut(s)	511, 617, 829
MhlI	GDGCHC	4 cut(s)	117, 330, 481, 766
MluCI	AATT	4 cut(s)	248, 380, 1000, 1041
MlyI	GAGTC	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	797
MspI	CCGG	1 cut(s)	686
MspR9I	CCNGG	1 cut(s)	1130
MvaI	CCWGG	1 cut(s)	1130
MwoI	GCNNNNNNNGC	4 cut(s)	129, 206, 608, 956
NdeII	GATC	8 cut(s)	411, 511, 536, 617, 801, 823, 829, 921
NlaIII	CATG	7 cut(s)	259, 418, 560, 732, 916, 931, 1037
NlaIV	GGNNCC	2 cut(s)	291, 755
NmeAIII	GCCGAG	1 cut(s)	309
NmuCI	GTSAC	3 cut(s)	448, 688, 1111
NspI	RCATGY	3 cut(s)	560, 732, 1037
PagI	TCATGA	2 cut(s)	414, 927
PciI	ACATGT	3 cut(s)	556, 728, 1033
PciSI	GCTCTTC	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	4 cut(s)	126, 437, 682, 934
PflFI	GACNNNGTC	1 cut(s)	293
PkrI	GCNGC	7 cut(s)	7, 95, 613, 699, 702, 905, 952
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PscI	ACATGT	3 cut(s)	556, 728, 1033
Psp124BI	GAGCTC	3 cut(s)	117, 330, 481
Psp6I	CCWGG	1 cut(s)	1128
PspGI	CCWGG	1 cut(s)	1128
PspN4I	GGNNCC	2 cut(s)	291, 755
PspPI	GGNCC	2 cut(s)	289, 1126
PsuI	RGATCY	3 cut(s)	511, 617, 829
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	3 cut(s)	77, 265, 911
RsaNI	GTAC	3 cut(s)	76, 264, 910
RseI	CAYNNNNRTG	1 cut(s)	797
SacI	GAGCTC	3 cut(s)	117, 330, 481
SalI	GTCGAC	3 cut(s)	296, 738, 1057
SapI	GCTCTTC	1 cut(s)	30
SatI	GCNGC	7 cut(s)	6, 94, 612, 698, 701, 904, 951
Sau3AI	GATC	8 cut(s)	411, 511, 536, 617, 801, 823, 829, 921
Sau96I	GGNCC	2 cut(s)	289, 1126
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	1130
SduI	GDGCHC	4 cut(s)	117, 330, 481, 766
SfaNI	GCATC	2 cut(s)	63, 968
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	3 cut(s)	116, 765, 871
SmoI	CTYRAG	3 cut(s)	116, 765, 871
Sse9I	AATT	4 cut(s)	248, 380, 1000, 1041
SspMI	CTAG	1 cut(s)	1135
SstI	GAGCTC	3 cut(s)	117, 330, 481
StyD4I	CCNGG	1 cut(s)	1128
TaaI	ACNGT	5 cut(s)	82, 145, 750, 899, 1063
TaiI	ACGT	2 cut(s)	695, 1081
TaqI	TCGA	7 cut(s)	297, 539, 649, 673, 739, 974, 1058
TaqII	GACCGA	1 cut(s)	757
TasI	AATT	4 cut(s)	248, 380, 1000, 1041
TatI	WGTACW	2 cut(s)	75, 909
TauI	GCSGC	4 cut(s)	96, 700, 703, 906
TfiI	GAWTC	4 cut(s)	126, 437, 682, 934
TscAI	CASTG	1 cut(s)	1068
TseFI	GTSAC	3 cut(s)	448, 688, 1111
TseI	GCWGC	3 cut(s)	5, 611, 950
Tsp45I	GTSAC	3 cut(s)	448, 688, 1111
TspDTI	ATGAA	2 cut(s)	431, 944
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	1 cut(s)	1068
Tth111I	GACNNNGTC	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	289
XceI	RCATGY	3 cut(s)	560, 732, 1037
XmiI	GTMKAC	3 cut(s)	297, 739, 1058
XspI	CTAG	1 cut(s)	1135
ZraI	GACGTC	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.