Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0009260

Physical Location & Seq

Genomic Coordinates Reverse (-)

30598791 .. 30599339

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1239400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGATCACAGTTCAATTTGATTCTCGCGGGATCTTTGATTGCAAGCCATTATGCTTAATTTGGACTCAATTCCCTGAGCCTTACTCCCACTTACGAAGAAACTTTGCAATGAACCCACAAAATGGTTTGATCATCAAGCCATTCAAGAAGGCCCATTCTAGCCGAGACAGTGATCATGAGCTTTTGAAACTCACAACCTACTTGCTTGCCATTGCGGAACTTGATGACTTGAGCAACCTTGATCATAACAACTGGCAGTCATTATCTGAGGACAATGTCAAAGGGCGCCGTCGGCATCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF ubiquitin

Protein Analysis

101

Amino Acids

11.74

Weight (kDa)

7.86

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06599
fragaria_vesca	FvH4_1g28920 FvH4_5g28710 FvH4_5g28710 FvH4_6g22010 FvH4_7g16160 FvH4_7g16790
malus_domestica	MD08G1239400.v1.1 MD08G1239500.v1.1 MD15G1431000.v1.1
prunus_persica	Prupe.1G576000_v2.0.a1
pyrus_communis	pycom08g20770
rosa_chinensis	RchiOBHm_Chr7g0220871
rosa_laevigata	RLG00000002196
rosa_multiflora	Rmu_ssc0000286.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238920
rosa_rugosa	Rorug07G0198100
rosa_samantha	Rh7AG338200 Rh7BG329000 Rh7CG356300 Rh7DG337100
rosa_wichuraiana	Rw6G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	285
AccB7I	CCANNNNNTGG	1 cut(s)	122
AccII	CGCG	1 cut(s)	27
AciI	CCGC	2 cut(s)	27, 215
AclWI	GGATC	1 cut(s)	38
AcyI	GRCGYC	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	14, 145, 187
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	285
BceAI	ACGGC	1 cut(s)	273
BclI	TGATCA	4 cut(s)	3, 129, 172, 241
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	159
BfoI	RGCGCY	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	287
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
Bpu10I	CCTNAGC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	250
BsaHI	GRCGYC	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	257
Bse3DI	GCAATG	2 cut(s)	114, 210
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMI	GCAATG	2 cut(s)	114, 210
BseMII	CTCAG	2 cut(s)	66, 258
BseNI	ACTGG	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	152
Bsp143I	GATC	5 cut(s)	3, 30, 129, 172, 241
BspACI	CCGC	2 cut(s)	27, 215
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	67, 259
BspFNI	CGCG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	287
BspPI	GGATC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	285
BsrDI	GCAATG	2 cut(s)	114, 210
BsrI	ACTGG	1 cut(s)	257
BssMI	GATC	5 cut(s)	3, 30, 129, 172, 241
BssNI	GRCGYC	1 cut(s)	286
Bst4CI	ACNGT	2 cut(s)	10, 170
BstACI	GRCGYC	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	44, 207
BstDEI	CTNAG	2 cut(s)	75, 267
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	5 cut(s)	6, 33, 132, 175, 244
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	5 cut(s)	3, 30, 129, 172, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstUI	CGCG	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	30
BstYI	RGATCY	1 cut(s)	30
BsuRI	GGCC	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	44, 207
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	151
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	6 cut(s)	46, 79, 139, 152, 162, 181
CviKI_1	RGCY	6 cut(s)	46, 79, 139, 152, 162, 181
DdeI	CTNAG	2 cut(s)	75, 267
DinI	GGCGCC	1 cut(s)	287
DpnI	GATC	5 cut(s)	5, 32, 131, 174, 243
DpnII	GATC	5 cut(s)	3, 30, 129, 172, 241
EgeI	GGCGCC	1 cut(s)	287
EheI	GGCGCC	1 cut(s)	287
FaeI	CATG	1 cut(s)	179
FaiI	YATR	3 cut(s)	52, 177, 246
FatI	CATG	1 cut(s)	175
FauI	CCCGC	1 cut(s)	20
FbaI	TGATCA	4 cut(s)	3, 129, 172, 241
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	287
HaeII	RGCGCY	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	286
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	2 cut(s)	20, 64
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	2 cut(s)	145, 176
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	10, 170
HpyCH4V	TGCA	2 cut(s)	42, 107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	2 cut(s)	75, 267
Hsp92I	GRCGYC	1 cut(s)	286
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	286
KasI	GGCGCC	1 cut(s)	285
Ksp22I	TGATCA	4 cut(s)	3, 129, 172, 241
Kzo9I	GATC	5 cut(s)	3, 30, 129, 172, 241
LpnPI	CCDG	2 cut(s)	87, 238
MaeI	CTAG	1 cut(s)	159
MalI	GATC	5 cut(s)	5, 32, 131, 174, 243
MboI	GATC	5 cut(s)	3, 30, 129, 172, 241
MboII	GAAGA	1 cut(s)	108
MflI	RGATCY	1 cut(s)	30
MluCI	AATT	3 cut(s)	14, 57, 68
Mly113I	GGCGCC	1 cut(s)	286
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	1 cut(s)	262
MseI	TTAA	1 cut(s)	56
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	292
NarI	GGCGCC	1 cut(s)	286
NdeII	GATC	5 cut(s)	3, 30, 129, 172, 241
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	1 cut(s)	287
NmeAIII	GCCGAG	1 cut(s)	188
PagI	TCATGA	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	20
PflFI	GACNNNGTC	1 cut(s)	275
PflMI	CCANNNNNTGG	1 cut(s)	122
PleI	GAGTC	1 cut(s)	58
PluTI	GGCGCC	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	30
PsyI	GACNNNGTC	1 cut(s)	275
SaqAI	TTAA	1 cut(s)	56
Sau3AI	GATC	5 cut(s)	3, 30, 129, 172, 241
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	1 cut(s)	58
SetI	ASST	3 cut(s)	183, 200, 240
SfoI	GGCGCC	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	3 cut(s)	14, 57, 68
SsiI	CCGC	2 cut(s)	27, 215
SspDI	GGCGCC	1 cut(s)	285
SspMI	CTAG	1 cut(s)	159
TaaI	ACNGT	2 cut(s)	10, 170
TasI	AATT	3 cut(s)	14, 57, 68
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	175
Tth111I	GACNNNGTC	1 cut(s)	275
Van91I	CCANNNNNTGG	1 cut(s)	122
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.