Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009260

Physical Location & Seq

Genomic Coordinates Forward (+)

13895175 .. 13895558

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g16160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGCAGCAGGAAGCTCATCATCAAAGATGGGAGAAGAGCAGGAGGAGGGGAGCATCAAGTGGAGCGGGAAGGAGTACACGGTTAGATTATGCGGCGACGACACTCTAGGCGAGCTTAAGCGCCGAATCTGCCAACTCACCACCGTCCTCCCCAAATGCCAAAAGCTTCTCTACCCCAAACTCCTCCCTTCCAAACTCACCGACGACGCCGTTTTGCTCTCCTCTCTCCCTTTCAAGTCCTCTCTCAAATTGACCATGATTGGTACTATAGAGGATGATATATCGTGGACCCCATCGACTCTCCTGACATTGTTGATGACTTTGAGCTCGGCCAAGATGAGGCTGTTGATATCAAAGATAATCATCTCAATAACCAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0031974 GO:0031981 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF ubiquitin

Protein Analysis

128

Amino Acids

14.02

Weight (kDa)

9.05

Isoelectric Point (pI)

42.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	19 - 58	4.7e-06	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06599
fragaria_vesca	FvH4_1g28920 FvH4_5g28710 FvH4_5g28710 FvH4_6g22010 FvH4_7g16160 FvH4_7g16790
malus_domestica	MD08G1239400.v1.1 MD08G1239500.v1.1 MD15G1431000.v1.1
prunus_persica	Prupe.1G576000_v2.0.a1
pyrus_communis	pycom08g20770
rosa_chinensis	RchiOBHm_Chr7g0220871
rosa_laevigata	RLG00000002196
rosa_multiflora	Rmu_ssc0000286.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238920
rosa_rugosa	Rorug07G0198100
rosa_samantha	Rh7AG338200 Rh7BG329000 Rh7CG356300 Rh7DG337100
rosa_wichuraiana	Rw6G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	66
AciI	CCGC	2 cut(s)	66, 93
AcoI	YGGCCR	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	2 cut(s)	77, 265
AfiI	CCNNNNNNNGG	1 cut(s)	339
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	235
AluBI	AGCT	4 cut(s)	15, 115, 166, 327
AluI	AGCT	4 cut(s)	15, 115, 166, 327
Alw21I	GWGCWC	1 cut(s)	329
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	288
AsuHPI	GGTGA	2 cut(s)	130, 190
AvaII	GGWCC	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	22, 301
BceAI	ACGGC	1 cut(s)	194
BfaI	CTAG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	124
BfrI	CTTAAG	1 cut(s)	116
BisI	GCNGC	2 cut(s)	6, 94
BlsI	GCNGC	2 cut(s)	7, 95
Bme18I	GGWCC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	290
BmsI	GCATC	1 cut(s)	63
BsaBI	GATNNNNATC	1 cut(s)	362
BsaHI	GRCGYC	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
Bse8I	GATNNNNATC	1 cut(s)	362
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseRI	GAGGAG	3 cut(s)	59, 173, 211
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	339
BsnI	GGCC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	329
BspACI	CCGC	2 cut(s)	66, 93
BspANI	GGCC	1 cut(s)	332
BspLI	GGNNCC	1 cut(s)	290
BspQI	GCTCTTC	1 cut(s)	30
BspTI	CTTAAG	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	66
BssNI	GRCGYC	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	82, 145
Bst6I	CTCTTC	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	207
BstAFI	CTTAAG	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	113
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	288
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	76, 264
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	6 cut(s)	15, 115, 166, 327, 332, 343
CviKI_1	RGCY	6 cut(s)	15, 115, 166, 327, 332, 343
CviQI	GTAC	2 cut(s)	76, 264
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	329
Eco32I	GATATC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	288
Eco53kI	GAGCTC	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	327
EcoRV	GATATC	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	1 cut(s)	259
FaiI	YATR	4 cut(s)	91, 257, 269, 281
FatI	CATG	1 cut(s)	255
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	2 cut(s)	6, 94
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	6, 94
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	2 cut(s)	6, 94
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	332
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	123
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	2 cut(s)	126, 298
HphI	GGTGA	2 cut(s)	130, 190
Hpy166II	GTNNAC	2 cut(s)	78, 288
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	2 cut(s)	78, 288
Hpy99I	CGWCG	3 cut(s)	101, 206, 209
HpyAV	CCTTC	2 cut(s)	64, 198
HpyCH4III	ACNGT	2 cut(s)	82, 145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	1 cut(s)	121
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	51, 63
LpnPI	CCDG	2 cut(s)	26, 317
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	63
MaeI	CTAG	1 cut(s)	107
MbiI	CCGCTC	1 cut(s)	66
MboII	GAAGA	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	2 cut(s)	248, 379
MlyI	GAGTC	1 cut(s)	292
MnlI	CCTC	8 cut(s)	37, 40, 158, 194, 232, 250, 265, 333
MseI	TTAA	1 cut(s)	117
MspCI	CTTAAG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	129
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	1 cut(s)	290
NmeAIII	GCCGAG	1 cut(s)	308
PciSI	GCTCTTC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	7, 95
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp124BI	GAGCTC	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	290
PspPI	GGNCC	1 cut(s)	288
RsaI	GTAC	2 cut(s)	77, 265
RsaNI	GTAC	2 cut(s)	76, 264
SacI	GAGCTC	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	2 cut(s)	6, 94
Sau96I	GGNCC	1 cut(s)	288
SchI	GAGTC	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	4 cut(s)	17, 117, 168, 329
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	2 cut(s)	248, 379
SsiI	CCGC	2 cut(s)	66, 93
SspMI	CTAG	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	329
TaaI	ACNGT	2 cut(s)	82, 145
TaqI	TCGA	1 cut(s)	296
TasI	AATT	2 cut(s)	248, 379
TatI	WGTACW	1 cut(s)	75
TauI	GCSGC	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseI	GCWGC	1 cut(s)	5
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	288
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.