Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009260

Physical Location & Seq

Genomic Coordinates Forward (+)

44285329 .. 44289774

Gene Structure 4446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG337100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCAGGAGTTTCGAGTTCAAGCTCCACGATGGCAGAAGAGGAGCTAACGTTGACAGTCAAGTGGAGCGGGAAGGAGTACACGGTTCGAGTATGCGGCGACGACACTGTGGGCGAGCTCAAGCGCCGAATCTGCCAACTCACCACCGTCTTGCCCAAACGCCAGAAGCTTCTGTACCCCAAACTCCTGCCTTCCAAATTGGCCGACGACGCCGTTTTGCTCTCCTCTCTCCCTTTCAAGTCCTCAGTCAAATTGACCATGATTGGTTCTATGGAGGATGATATTATAGTGGATCCCGTCGACTCTCCTGACATTGTTGATGACTTTGAGCTCGGCCAAGATGAGGCTGTTGACATCAAGGATAATCATGTTAATAACCAGAAATTGAGGAGGCGTATAGATCATTACAAGATTGAACTTAAGAATCCCTGCCGCCAAGGAAAGAAGCTGCTTGTGCTGGATATTGATTATACTCTCTTTGATCATCGGTCCACAGCAGAGAACCCACTTCAACTTATGCGTCCTTATCTTCATGAGTTTCTGACAGCTGCTTATGCGGAATATGATATTATGATATGGTCTGCAACCAGCATCAAATGGGTTGAATTGAAGATGGGACAGCTTGGGGTACTCAACAATCCCAACTACAAAATCACTGCTCTTCTAGACCATTTAGCAATGATTACCGTTCAGTCAGGTTCGCGTGGAATCTTTGATTGCAAGCCACTAGGCTTAATCTGGGCTCAATTCCCTGAGGTATGTATGGAATTATTATTGATCTCCATTCTCTGTCTCTTTTCTCTCCCTCAAAATAGTTTTAAACTGATGTTGAGAAATATTGTTCCCTCCTTTGTAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF ubiquitin

Protein Analysis

286

Amino Acids

32.4

Weight (kDa)

5.79

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	18 - 59	4.6e-08	Ubiquitin family
NIF	PF03031	149 - 228	8.5e-10	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G06599
fragaria_vesca	FvH4_1g28920 FvH4_5g28710 FvH4_5g28710 FvH4_6g22010 FvH4_7g16160 FvH4_7g16790
malus_domestica	MD08G1239400.v1.1 MD08G1239500.v1.1 MD15G1431000.v1.1
prunus_persica	Prupe.1G576000_v2.0.a1
pyrus_communis	pycom08g20770
rosa_chinensis	RchiOBHm_Chr7g0220871
rosa_laevigata	RLG00000002196
rosa_multiflora	Rmu_ssc0000286.1_g000005
rosa_roxburghii	Rroxscaffold_3G00238920
rosa_rugosa	Rorug07G0198100
rosa_samantha	Rh7AG338200 Rh7BG329000 Rh7CG356300 Rh7DG337100
rosa_wichuraiana	Rw6G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	703
AciI	CCGC	4 cut(s)	69, 96, 433, 557
AclI	AACGTT	1 cut(s)	50
AclWI	GGATC	2 cut(s)	287, 300
AcoI	YGGCCR	2 cut(s)	201, 334
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	3 cut(s)	80, 176, 630
AfiI	CCNNNNNNNGG	1 cut(s)	343
AflII	CTTAAG	1 cut(s)	419
AgsI	TTSAA	6 cut(s)	21, 238, 416, 512, 605, 610
AluBI	AGCT	8 cut(s)	24, 46, 118, 169, 331, 448, 548, 622
AluI	AGCT	8 cut(s)	24, 46, 118, 169, 331, 448, 548, 622
Alw21I	GWGCWC	2 cut(s)	120, 333
Alw26I	GTCTC	1 cut(s)	797
AlwI	GGATC	2 cut(s)	287, 300
AoxI	GGCC	2 cut(s)	201, 334
ApeKI	GCWGC	2 cut(s)	448, 548
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	489
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	1 cut(s)	489
AxyI	CCTNAGG	1 cut(s)	753
BamHI	GGATCC	1 cut(s)	292
BanII	GRGCYC	3 cut(s)	120, 333, 745
BarI	GAAGNNNNNNTAC	2 cut(s)	158, 190
Bbv12I	GWGCWC	2 cut(s)	120, 333
BbvI	GCAGC	2 cut(s)	435, 535
BccI	CCATC	2 cut(s)	25, 607
BceAI	ACGGC	1 cut(s)	197
BcgI	CGANNNNNNTGC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	797
BfaI	CTAG	2 cut(s)	665, 728
BfoI	RGCGCY	1 cut(s)	127
BfrI	CTTAAG	1 cut(s)	419
BisI	GCNGC	4 cut(s)	97, 433, 449, 549
BlsI	GCNGC	4 cut(s)	98, 434, 450, 550
Bme18I	GGWCC	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	489
BmiI	GGNNCC	1 cut(s)	294
BmsI	GCATC	1 cut(s)	600
BpuEI	CTTGAG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	436
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse21I	CCTNAGG	1 cut(s)	753
Bse3DI	GCAATG	1 cut(s)	684
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	2 cut(s)	258, 744
BseRI	GAGGAG	3 cut(s)	56, 214, 403
BseXI	GCAGC	2 cut(s)	435, 535
Bsh1236I	CGCG	1 cut(s)	703
BshFI	GGCC	2 cut(s)	203, 336
BsiHKAI	GWGCWC	2 cut(s)	120, 333
BslFI	GGGAC	1 cut(s)	630
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	797
BsmFI	GGGAC	1 cut(s)	630
BsnI	GGCC	2 cut(s)	203, 336
Bsp1286I	GDGCHC	3 cut(s)	120, 333, 745
Bsp143I	GATC	4 cut(s)	292, 400, 481, 777
BspACI	CCGC	4 cut(s)	69, 96, 433, 557
BspANI	GGCC	2 cut(s)	203, 336
BspCNI	CTCAG	2 cut(s)	257, 745
BspFNI	CGCG	1 cut(s)	703
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	1 cut(s)	294
BspPI	GGATC	2 cut(s)	287, 300
BspQI	GCTCTTC	1 cut(s)	666
BspTI	CTTAAG	1 cut(s)	419
BsrBI	CCGCTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	684
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	4 cut(s)	292, 400, 481, 777
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	436
Bst4CI	ACNGT	5 cut(s)	58, 85, 109, 148, 688
Bst6I	CTCTTC	2 cut(s)	33, 666
BstACI	GRCGYC	1 cut(s)	210
BstAFI	CTTAAG	1 cut(s)	419
BstC8I	GCNNGC	2 cut(s)	116, 722
BstDEI	CTNAG	2 cut(s)	244, 753
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	703
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	4 cut(s)	295, 403, 484, 780
BstMAI	GTCTC	1 cut(s)	797
BstMBI	GATC	4 cut(s)	292, 400, 481, 777
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 209, 454, 554
BstUI	CGCG	1 cut(s)	703
BstV1I	GCAGC	2 cut(s)	435, 535
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
Bsu36I	CCTNAGG	1 cut(s)	753
BsuRI	GGCC	2 cut(s)	203, 336
BtsCI	GGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	2 cut(s)	105, 654
Cac8I	GCNNGC	2 cut(s)	116, 722
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	1 cut(s)	489
CseI	GACGC	2 cut(s)	218, 509
Csp6I	GTAC	3 cut(s)	79, 175, 629
CviAII	CATG	3 cut(s)	259, 368, 533
CviQI	GTAC	3 cut(s)	79, 175, 629
DdeI	CTNAG	2 cut(s)	244, 753
DpnI	GATC	4 cut(s)	294, 402, 483, 779
DpnII	GATC	4 cut(s)	292, 400, 481, 777
DraI	TTTAAA	1 cut(s)	820
EaeI	YGGCCR	2 cut(s)	201, 334
Eam1104I	CTCTTC	2 cut(s)	33, 666
EarI	CTCTTC	2 cut(s)	33, 666
Ecl136II	GAGCTC	2 cut(s)	118, 331
Eco130I	CCWWGG	1 cut(s)	436
Eco24I	GRGCYC	3 cut(s)	120, 333, 745
Eco47I	GGWCC	1 cut(s)	489
Eco53kI	GAGCTC	2 cut(s)	118, 331
Eco81I	CCTNAGG	1 cut(s)	753
EcoICRI	GAGCTC	2 cut(s)	118, 331
EcoT14I	CCWWGG	1 cut(s)	436
EcoT38I	GRGCYC	3 cut(s)	120, 333, 745
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	3 cut(s)	262, 371, 536
FaqI	GGGAC	1 cut(s)	630
FatI	CATG	3 cut(s)	258, 367, 532
FauI	CCCGC	1 cut(s)	62
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	4 cut(s)	97, 433, 449, 549
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	3 cut(s)	120, 333, 745
Fsp4HI	GCNGC	4 cut(s)	97, 433, 449, 549
FspBI	CTAG	2 cut(s)	665, 728
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	4 cut(s)	97, 433, 449, 549
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	2 cut(s)	203, 336
HgaI	GACGC	2 cut(s)	218, 509
HhaI	GCGC	1 cut(s)	126
Hin1I	GRCGYC	1 cut(s)	210
Hin1II	CATG	3 cut(s)	262, 371, 536
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HincII	GTYRAC	3 cut(s)	54, 301, 352
HindII	GTYRAC	3 cut(s)	54, 301, 352
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	4 cut(s)	129, 302, 424, 708
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	5 cut(s)	54, 81, 301, 352, 492
Hpy188I	TCNGA	1 cut(s)	543
Hpy188III	TCNNGA	3 cut(s)	308, 533, 665
Hpy8I	GTNNAC	5 cut(s)	54, 81, 301, 352, 492
Hpy99I	CGWCG	4 cut(s)	104, 209, 212, 302
HpyAV	CCTTC	2 cut(s)	67, 201
HpyCH4III	ACNGT	5 cut(s)	58, 85, 109, 148, 688
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	2 cut(s)	584, 720
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 209, 454, 554
HpyF3I	CTNAG	2 cut(s)	244, 753
HpySE526I	ACGT	1 cut(s)	50
Hsp92I	GRCGYC	1 cut(s)	210
Hsp92II	CATG	3 cut(s)	262, 371, 536
HspAI	GCGC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	4 cut(s)	292, 400, 481, 777
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	3 cut(s)	29, 43, 66
Lsp1109I	GCAGC	2 cut(s)	435, 535
LweI	GCATC	1 cut(s)	600
MaeI	CTAG	2 cut(s)	665, 728
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	853
MalI	GATC	4 cut(s)	294, 402, 483, 779
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	4 cut(s)	292, 400, 481, 777
MboII	GAAGA	4 cut(s)	50, 521, 622, 653
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	3 cut(s)	120, 333, 745
MluCI	AATT	6 cut(s)	197, 251, 383, 605, 746, 767
MlyI	GAGTC	1 cut(s)	296
MseI	TTAA	5 cut(s)	372, 420, 734, 819, 859
MspA1I	CMGCKG	1 cut(s)	548
MspCI	CTTAAG	1 cut(s)	419
MvnI	CGCG	1 cut(s)	703
MwoI	GCNNNNNNNGC	4 cut(s)	132, 209, 454, 554
NdeII	GATC	4 cut(s)	292, 400, 481, 777
NlaIII	CATG	3 cut(s)	262, 371, 536
NlaIV	GGNNCC	1 cut(s)	294
NmeAIII	GCCGAG	1 cut(s)	312
PagI	TCATGA	1 cut(s)	532
PciSI	GCTCTTC	1 cut(s)	666
PfeI	GAWTC	3 cut(s)	129, 424, 708
PkrI	GCNGC	4 cut(s)	98, 434, 450, 550
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
Psp124BI	GAGCTC	2 cut(s)	120, 333
Psp1406I	AACGTT	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	489
PsuI	RGATCY	1 cut(s)	292
PvuII	CAGCTG	1 cut(s)	548
RsaI	GTAC	3 cut(s)	80, 176, 630
RsaNI	GTAC	3 cut(s)	79, 175, 629
SacI	GAGCTC	2 cut(s)	120, 333
SalI	GTCGAC	1 cut(s)	299
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	5 cut(s)	372, 420, 734, 819, 859
SatI	GCNGC	4 cut(s)	97, 433, 449, 549
Sau3AI	GATC	4 cut(s)	292, 400, 481, 777
Sau96I	GGNCC	1 cut(s)	489
SchI	GAGTC	1 cut(s)	296
SduI	GDGCHC	3 cut(s)	120, 333, 745
SfaNI	GCATC	1 cut(s)	600
SinI	GGWCC	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	119, 419
SmoI	CTYRAG	2 cut(s)	119, 419
Sse9I	AATT	6 cut(s)	197, 251, 383, 605, 746, 767
SsiI	CCGC	4 cut(s)	69, 96, 433, 557
SspI	AATATT	1 cut(s)	838
SspMI	CTAG	2 cut(s)	665, 728
SstI	GAGCTC	2 cut(s)	120, 333
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	5 cut(s)	58, 85, 109, 148, 688
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	3 cut(s)	14, 88, 300
TaqII	GACCGA	1 cut(s)	477
TasI	AATT	6 cut(s)	197, 251, 383, 605, 746, 767
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	2 cut(s)	99, 435
TfiI	GAWTC	3 cut(s)	129, 424, 708
Tru1I	TTAA	5 cut(s)	372, 420, 734, 819, 859
Tru9I	TTAA	5 cut(s)	372, 420, 734, 819, 859
TscAI	CASTG	2 cut(s)	112, 661
TseI	GCWGC	2 cut(s)	448, 548
TspDTI	ATGAA	1 cut(s)	521
TspRI	CASTG	2 cut(s)	112, 661
Vha464I	CTTAAG	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	489
XbaI	TCTAGA	1 cut(s)	664
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	2 cut(s)	665, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.