Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007362

Physical Location & Seq

Genomic Coordinates Forward (+)

4195564 .. 4197571

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G07390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGATTATCTCGGAATCGACATGAGCTGCGCGATCGGATCTCTCCGGAACGGTGACTTCCCGGAGAAAGATTGTCTTCTTCCTCTAATTTCAAAGCTTCTCGGTTATTGCCTCGTTGCTGCTTCAATCACCGTCAAGCTCCCTCAGATAATGAAAATCGTTCAACATAAGAGTGTACGAGGCTTAAGTGTTGTGGCATTTGAGCTTGAAGTTGTTGGTTACACAATTTCACTTGCTTATTGTTTGCATAAAGGTCTTCCCTTTTCGGCTTTCGGCGAAATGGCTTTTCTTTTGATCCAAGCTTTAATCTTGGTGGCTTGTATCTATTATTATTCACAACCAGTACCTGTCACAACTTGGATTAGACCACTTCTATATTGCGCTGTGGCGCCAACTGTGCTTGCTGGACAGATTAATCCGACGCTTTTCGAAGCTCTTTATGCTTCACAACATGCGATATTTCTCTTTGCAAGACTCCCTCAGATATGGAAGAACTTTAAAAACAAAAGCACTGGAGAACTTAGTTTCTTAACTTTCTTCATGAACTTTGCCGGGTCAATAGTGAGAGTTTTCACCAGCTTACAGGAAAAAGCTCCAATTAGCATTCTTACGGGTTTCGCTCTTGGAGTCGTCACCAACGGAAGCATCCTGACGCAGATTCTCTTGTACTCGAAGCCTGCTGCTGCAAAGGAGAAGAAAGCCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

235

Amino Acids

25.8

Weight (kDa)

9.1

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	30 - 89	1.4e-14	PQ loop repeat
PQ-loop	PF04193	151 - 201	3e-16	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G07390 AT4G07390 AT5G59470 AT5G59470
fragaria_vesca	FvH4_2g33730
malus_domestica	MD08G1093700.v1.1 MD15G1077400.v1.1
prunus_persica	Prupe.1G430800_v2.0.a1 Prupe.1G430800_v2.0.a1
pyrus_communis	pycom15g07210
rosa_chinensis	RchiOBHm_Chr0c32g0501551 RchiOBHm_Chr6g0308821
rosa_laevigata	RLG00000010615
rosa_multiflora	Rmu_sc0004046.1_g000007
rosa_roxburghii	Rroxscaffold_7G00159890
rosa_rugosa	Rorug06G0368300 Rorug06G0368300
rosa_samantha	Rh3CG360800 Rh3CG366300 Rh5AG388300 Rh6BG489200 Rh6CG494700 Rh6DG480100
rosa_wichuraiana	Rw6G041830 Rw7G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	388
AccII	CGCG	1 cut(s)	32
AccIII	TCCGGA	1 cut(s)	45
AclWI	GGATC	2 cut(s)	46, 289
AcyI	GRCGYC	1 cut(s)	389
AfaI	GTAC	3 cut(s)	177, 345, 668
AflII	CTTAAG	1 cut(s)	184
AgsI	TTSAA	4 cut(s)	93, 126, 164, 209
AluBI	AGCT	8 cut(s)	27, 97, 139, 205, 302, 434, 579, 593
AluI	AGCT	8 cut(s)	27, 97, 139, 205, 302, 434, 579, 593
AlwI	GGATC	2 cut(s)	46, 289
AlwNI	CAGNNNCTG	1 cut(s)	347
Aor13HI	TCCGGA	1 cut(s)	45
ApeKI	GCWGC	4 cut(s)	27, 119, 680, 683
AseI	ATTAAT	1 cut(s)	414
AspLEI	GCGC	3 cut(s)	32, 383, 391
AsuC2I	CCSGG	2 cut(s)	62, 553
AsuHPI	GGTGA	4 cut(s)	65, 121, 565, 625
AsuII	TTCGAA	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	388
BbsI	GAAGAC	2 cut(s)	68, 248
BbvI	GCAGC	4 cut(s)	14, 106, 667, 670
BcnI	CCSGG	2 cut(s)	62, 553
BfoI	RGCGCY	1 cut(s)	392
BfrI	CTTAAG	1 cut(s)	184
BisI	GCNGC	4 cut(s)	28, 120, 681, 684
BlsI	GCNGC	4 cut(s)	29, 121, 682, 685
Bme1390I	CCNGG	2 cut(s)	62, 553
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	2 cut(s)	62, 553
BmsI	GCATC	1 cut(s)	654
BpiI	GAAGAC	2 cut(s)	68, 248
BpmI	CTGGAG	1 cut(s)	534
Bpu14I	TTCGAA	1 cut(s)	429
BpuMI	CCSGG	2 cut(s)	62, 553
BsaHI	GRCGYC	1 cut(s)	389
BsaWI	WCCGGW	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	341, 517
BseAI	TCCGGA	1 cut(s)	45
BseGI	GGATG	1 cut(s)	645
BseMII	CTCAG	2 cut(s)	158, 494
BseNI	ACTGG	2 cut(s)	341, 517
BseXI	GCAGC	4 cut(s)	14, 106, 667, 670
Bsh1236I	CGCG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	36
BshNI	GGYRCC	1 cut(s)	388
BsiEI	CGRYCG	1 cut(s)	36
BsiSI	CCGG	3 cut(s)	46, 62, 552
BsmI	GAATGC	1 cut(s)	603
Bsp119I	TTCGAA	1 cut(s)	429
Bsp13I	TCCGGA	1 cut(s)	45
Bsp143I	GATC	3 cut(s)	33, 38, 294
BspCNI	CTCAG	2 cut(s)	157, 493
BspEI	TCCGGA	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	32
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	1 cut(s)	390
BspPI	GGATC	2 cut(s)	46, 289
BspT104I	TTCGAA	1 cut(s)	429
BspT107I	GGYRCC	1 cut(s)	388
BspTI	CTTAAG	1 cut(s)	184
BsrI	ACTGG	2 cut(s)	341, 517
BssMI	GATC	3 cut(s)	33, 38, 294
BssNI	GRCGYC	1 cut(s)	389
Bst4CI	ACNGT	3 cut(s)	53, 133, 397
BstACI	GRCGYC	1 cut(s)	389
BstAFI	CTTAAG	1 cut(s)	184
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	402, 678
BstDEI	CTNAG	3 cut(s)	144, 480, 521
BstF5I	GGATG	1 cut(s)	645
BstFNI	CGCG	1 cut(s)	32
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	3 cut(s)	32, 383, 391
BstKTI	GATC	3 cut(s)	36, 41, 297
BstMBI	GATC	3 cut(s)	33, 38, 294
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	397, 440
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	2 cut(s)	60, 551
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	4 cut(s)	14, 106, 667, 670
BstV2I	GAAGAC	2 cut(s)	68, 248
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	645
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	2 cut(s)	402, 678
CaiI	CAGNNNCTG	1 cut(s)	347
CciI	TCATGA	1 cut(s)	540
CfoI	GCGC	3 cut(s)	32, 383, 391
CseI	GACGC	2 cut(s)	430, 661
Csp6I	GTAC	3 cut(s)	176, 344, 667
CviAII	CATG	3 cut(s)	22, 452, 541
CviQI	GTAC	3 cut(s)	176, 344, 667
DdeI	CTNAG	3 cut(s)	144, 480, 521
DinI	GGCGCC	1 cut(s)	390
DpnI	GATC	3 cut(s)	35, 40, 296
DpnII	GATC	3 cut(s)	33, 38, 294
DraI	TTTAAA	1 cut(s)	499
EgeI	GGCGCC	1 cut(s)	390
EheI	GGCGCC	1 cut(s)	390
FaeI	CATG	3 cut(s)	25, 455, 544
FaiI	YATR	8 cut(s)	23, 168, 249, 376, 441, 453, 487, 542
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	3 cut(s)	21, 451, 540
Fnu4HI	GCNGC	4 cut(s)	28, 120, 681, 684
FokI	GGATG	1 cut(s)	632
Fsp4HI	GCNGC	4 cut(s)	28, 120, 681, 684
GlaI	GCGC	3 cut(s)	31, 382, 390
GluI	GCNGC	4 cut(s)	28, 120, 681, 684
GsuI	CTGGAG	1 cut(s)	534
HaeII	RGCGCY	1 cut(s)	392
HapII	CCGG	3 cut(s)	46, 62, 552
HgaI	GACGC	2 cut(s)	430, 661
HhaI	GCGC	3 cut(s)	32, 383, 391
Hin1I	GRCGYC	1 cut(s)	389
Hin1II	CATG	3 cut(s)	25, 455, 544
Hin6I	GCGC	3 cut(s)	30, 381, 389
HinP1I	GCGC	3 cut(s)	30, 381, 389
HindIII	AAGCTT	2 cut(s)	95, 300
HinfI	GANTC	4 cut(s)	15, 474, 627, 658
HpaII	CCGG	3 cut(s)	46, 62, 552
HphI	GGTGA	4 cut(s)	65, 121, 565, 625
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	5 cut(s)	14, 38, 147, 420, 483
Hpy188III	TCNNGA	3 cut(s)	46, 541, 649
Hpy8I	GTNNAC	1 cut(s)	176
Hpy99I	CGWCG	1 cut(s)	424
HpyCH4III	ACNGT	3 cut(s)	53, 133, 397
HpyCH4V	TGCA	3 cut(s)	247, 470, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	397, 440
HpyF3I	CTNAG	3 cut(s)	144, 480, 521
Hsp92I	GRCGYC	1 cut(s)	389
Hsp92II	CATG	3 cut(s)	25, 455, 544
HspAI	GCGC	3 cut(s)	30, 381, 389
KasI	GGCGCC	1 cut(s)	388
Kpn2I	TCCGGA	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	33, 38, 294
LmnI	GCTCC	2 cut(s)	144, 598
Lsp1109I	GCAGC	4 cut(s)	14, 106, 667, 670
LweI	GCATC	1 cut(s)	654
MaeIII	GTNAC	4 cut(s)	53, 218, 349, 631
MalI	GATC	3 cut(s)	35, 40, 296
MboI	GATC	3 cut(s)	33, 38, 294
MboII	GAAGA	6 cut(s)	68, 71, 248, 502, 529, 706
MfeI	CAATTG	1 cut(s)	703
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	4 cut(s)	87, 225, 597, 703
Mly113I	GGCGCC	1 cut(s)	389
MlyI	GAGTC	2 cut(s)	468, 636
MmeI	TCCRAC	1 cut(s)	443
MnlI	CCTC	5 cut(s)	93, 122, 153, 173, 489
MroI	TCCGGA	1 cut(s)	45
MseI	TTAA	5 cut(s)	185, 305, 414, 498, 530
MslI	CAYNNNNRTG	1 cut(s)	171
MspCI	CTTAAG	1 cut(s)	184
MspI	CCGG	3 cut(s)	46, 62, 552
MspR9I	CCNGG	2 cut(s)	62, 553
MunI	CAATTG	1 cut(s)	703
Mva1269I	GAATGC	1 cut(s)	603
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	397, 440
NarI	GGCGCC	1 cut(s)	389
NciI	CCSGG	2 cut(s)	62, 553
NdeII	GATC	3 cut(s)	33, 38, 294
NlaIII	CATG	3 cut(s)	25, 455, 544
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	3 cut(s)	53, 349, 631
NspI	RCATGY	1 cut(s)	455
NspV	TTCGAA	1 cut(s)	429
PagI	TCATGA	1 cut(s)	540
PctI	GAATGC	1 cut(s)	603
PfeI	GAWTC	2 cut(s)	15, 658
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	4 cut(s)	29, 121, 682, 685
Ple19I	CGATCG	1 cut(s)	36
PleI	GAGTC	2 cut(s)	468, 635
PluTI	GGCGCC	1 cut(s)	392
PpsI	GAGTC	2 cut(s)	468, 635
PshBI	ATTAAT	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	38
PvuI	CGATCG	1 cut(s)	36
RsaI	GTAC	3 cut(s)	177, 345, 668
RsaNI	GTAC	3 cut(s)	176, 344, 667
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	5 cut(s)	185, 305, 414, 498, 530
SatI	GCNGC	4 cut(s)	28, 120, 681, 684
Sau3AI	GATC	3 cut(s)	33, 38, 294
SchI	GAGTC	2 cut(s)	468, 636
ScrFI	CCNGG	2 cut(s)	62, 553
SfaNI	GCATC	1 cut(s)	654
SfoI	GGCGCC	1 cut(s)	390
SfuI	TTCGAA	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	4 cut(s)	87, 225, 597, 703
SspDI	GGCGCC	1 cut(s)	388
StyD4I	CCNGG	2 cut(s)	60, 551
TaaI	ACNGT	3 cut(s)	53, 133, 397
TaqI	TCGA	3 cut(s)	18, 429, 671
TasI	AATT	4 cut(s)	87, 225, 597, 703
TatI	WGTACW	1 cut(s)	666
TfiI	GAWTC	2 cut(s)	15, 658
Tru1I	TTAA	5 cut(s)	185, 305, 414, 498, 530
Tru9I	TTAA	5 cut(s)	185, 305, 414, 498, 530
TscAI	CASTG	1 cut(s)	517
TseFI	GTSAC	3 cut(s)	53, 349, 631
TseI	GCWGC	4 cut(s)	27, 119, 680, 683
Tsp45I	GTSAC	3 cut(s)	53, 349, 631
TspDTI	ATGAA	3 cut(s)	167, 529, 557
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	1 cut(s)	517
Vha464I	CTTAAG	1 cut(s)	184
VspI	ATTAAT	1 cut(s)	414
XceI	RCATGY	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.