Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007362

Physical Location & Seq

Genomic Coordinates Forward (+)

23978550 .. 23979478

Gene Structure 929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGATTATCTAGGAATCGACTTGAGCTGCGCAATCGGATCTCTCCGTAACGGTGAGTTTCCGGCGAAAGATTGTCTTCTTCCTCTCATTTCAAAGCTACTCGGTTACTTCCTCGTCGCTGCTTCAATGACCGTTAAGCTTCCTCAGATAATGAAAATCGTGGACAACAAGAGTGTAAAAGGCCTAAGTGTTGTAGCATTTGAGCTTGAAGTGATTGGTTACACAATCTCACTTGCTTACTGTCTTAACAAAGACCTTCCTTTTTCAGCTTTTGGTGAATTAGCTTTTCTTTTGATCCAAGCTTTAATCTTGGTGGCTTGTATCTACTATTTCTCACAACCTCTCTCTGTAACAACTTGGGTCAAAGCAATTCTTTATTTTGCTATAGCACCAACTGTGTTTGCTGGTAAGATTGATCCTTTTCTTTTTGAAGCTCTTTATGCTTCTAAGCATTTGATATTTCTCTCTGCAAGAATCCCTCAGATTTGGAAGAACTTCAGAAACAAAAGCACTGGACAACTTAGTTTCTTGACTTGTCTCATGAACTTTGGTGGAGCTTTGGCGAGAGTTTTCACCAGCATTCAAGAGAAGGCTCCACTTAGCATGCTTTTGGGTATTGTTCTTTCTATCTTCACCAATGGAATCATTATGAGTCAGATTCTTTTGTATAGAAGCAAAGGAAACGAAGATAAGCTAGTGAAAAGTAAAAAGATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

239

Amino Acids

26.42

Weight (kDa)

9.32

Isoelectric Point (pI)

26.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	30 - 89	8.4e-14	PQ loop repeat
PQ-loop	PF04193	148 - 201	4.5e-16	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G07390 AT4G07390 AT5G59470 AT5G59470
fragaria_vesca	FvH4_2g33730
malus_domestica	MD08G1093700.v1.1 MD15G1077400.v1.1
prunus_persica	Prupe.1G430800_v2.0.a1 Prupe.1G430800_v2.0.a1
pyrus_communis	pycom15g07210
rosa_chinensis	RchiOBHm_Chr0c32g0501551 RchiOBHm_Chr6g0308821
rosa_laevigata	RLG00000010615
rosa_multiflora	Rmu_sc0004046.1_g000007
rosa_roxburghii	Rroxscaffold_7G00159890
rosa_rugosa	Rorug06G0368300 Rorug06G0368300
rosa_samantha	Rh3CG360800 Rh3CG366300 Rh5AG388300 Rh6BG489200 Rh6CG494700 Rh6DG480100
rosa_wichuraiana	Rw6G041830 Rw7G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	31
AclWI	GGATC	3 cut(s)	46, 289, 410
AcuI	CTGAAG	1 cut(s)	481
AgsI	TTSAA	5 cut(s)	93, 126, 209, 431, 584
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	3 cut(s)	46, 289, 410
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	27, 119
Asp700I	GAANNNNTTC	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	32
AsuHPI	GGTGA	4 cut(s)	65, 287, 565, 625
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	14, 106
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	2 cut(s)	11, 695
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	2 cut(s)	28, 120
BlsI	GCNGC	2 cut(s)	29, 121
BmiI	GGNNCC	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	158, 494
BseNI	ACTGG	1 cut(s)	517
BseXI	GCAGC	2 cut(s)	14, 106
BshFI	GGCC	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	542
BsmI	GAATGC	1 cut(s)	579
BsnI	GGCC	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	38, 294, 415
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	2 cut(s)	157, 493
BspHI	TCATGA	2 cut(s)	540, 716
BspLI	GGNNCC	1 cut(s)	594
BspPI	GGATC	3 cut(s)	46, 289, 410
BsrI	ACTGG	1 cut(s)	517
BssMI	GATC	3 cut(s)	38, 294, 415
Bst4CI	ACNGT	4 cut(s)	53, 133, 242, 397
BstC8I	GCNNGC	1 cut(s)	605
BstDEI	CTNAG	6 cut(s)	144, 185, 447, 480, 521, 599
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	3 cut(s)	41, 297, 418
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	3 cut(s)	38, 294, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	607
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	14, 106
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	1 cut(s)	605
CciI	TCATGA	2 cut(s)	540, 716
CfoI	GCGC	1 cut(s)	32
CviAII	CATG	3 cut(s)	541, 604, 717
DdeI	CTNAG	6 cut(s)	144, 185, 447, 480, 521, 599
DpnI	GATC	3 cut(s)	40, 296, 417
DpnII	GATC	3 cut(s)	38, 294, 415
Eco147I	AGGCCT	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	481
FaeI	CATG	3 cut(s)	544, 607, 720
FaiI	YATR	7 cut(s)	386, 441, 542, 605, 650, 669, 718
FalI	AAGNNNNNCTT	4 cut(s)	60, 92, 357, 389
FatI	CATG	3 cut(s)	540, 603, 716
Fnu4HI	GCNGC	2 cut(s)	28, 120
Fsp4HI	GCNGC	2 cut(s)	28, 120
FspBI	CTAG	2 cut(s)	11, 695
FspI	TGCGCA	1 cut(s)	31
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	2 cut(s)	28, 120
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	544, 607, 720
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HindIII	AAGCTT	2 cut(s)	137, 300
HinfI	GANTC	5 cut(s)	15, 474, 642, 652, 658
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	4 cut(s)	65, 287, 565, 625
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	5 cut(s)	38, 147, 483, 500, 657
Hpy188III	TCNNGA	4 cut(s)	529, 541, 584, 717
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	266, 583
HpyCH4III	ACNGT	4 cut(s)	53, 133, 242, 397
HpyCH4V	TGCA	1 cut(s)	470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpyF3I	CTNAG	6 cut(s)	144, 185, 447, 480, 521, 599
Hsp92II	CATG	3 cut(s)	544, 607, 720
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	38, 294, 415
LmnI	GCTCC	2 cut(s)	554, 598
LpnPI	CCDG	4 cut(s)	75, 390, 498, 589
Lsp1109I	GCAGC	2 cut(s)	14, 106
MaeI	CTAG	2 cut(s)	11, 695
MaeIII	GTNAC	4 cut(s)	47, 104, 218, 349
MalI	GATC	3 cut(s)	40, 296, 417
MboI	GATC	3 cut(s)	38, 294, 415
MboII	GAAGA	5 cut(s)	68, 71, 502, 622, 698
MflI	RGATCY	1 cut(s)	38
MluCI	AATT	2 cut(s)	278, 369
MlyI	GAGTC	1 cut(s)	661
MnlI	CCTC	5 cut(s)	93, 122, 153, 351, 489
MroXI	GAANNNNTTC	1 cut(s)	494
MseI	TTAA	3 cut(s)	135, 246, 305
MspI	CCGG	1 cut(s)	62
Mva1269I	GAATGC	1 cut(s)	579
MwoI	GCNNNNNNNGC	1 cut(s)	440
NdeII	GATC	3 cut(s)	38, 294, 415
NlaIII	CATG	3 cut(s)	544, 607, 720
NlaIV	GGNNCC	1 cut(s)	594
NsbI	TGCGCA	1 cut(s)	31
NspI	RCATGY	1 cut(s)	607
PaeI	GCATGC	1 cut(s)	607
PagI	TCATGA	2 cut(s)	540, 716
PceI	AGGCCT	1 cut(s)	183
PctI	GAATGC	1 cut(s)	579
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	4 cut(s)	15, 474, 642, 658
PkrI	GCNGC	2 cut(s)	29, 121
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
PspN4I	GGNNCC	1 cut(s)	594
PsuI	RGATCY	1 cut(s)	38
SaqAI	TTAA	3 cut(s)	135, 246, 305
SatI	GCNGC	2 cut(s)	28, 120
Sau3AI	GATC	3 cut(s)	38, 294, 415
SchI	GAGTC	1 cut(s)	661
SfcI	CTRYAG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
SphI	GCATGC	1 cut(s)	607
Sse9I	AATT	2 cut(s)	278, 369
SseBI	AGGCCT	1 cut(s)	183
SspMI	CTAG	2 cut(s)	11, 695
StuI	AGGCCT	1 cut(s)	183
TaaI	ACNGT	4 cut(s)	53, 133, 242, 397
TaqI	TCGA	1 cut(s)	18
TasI	AATT	2 cut(s)	278, 369
TfiI	GAWTC	4 cut(s)	15, 474, 642, 658
Tru1I	TTAA	3 cut(s)	135, 246, 305
Tru9I	TTAA	3 cut(s)	135, 246, 305
TscAI	CASTG	1 cut(s)	517
TseI	GCWGC	2 cut(s)	27, 119
TspDTI	ATGAA	3 cut(s)	167, 557, 705
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	517
XceI	RCATGY	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	2 cut(s)	11, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.