Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007362

Physical Location & Seq

Genomic Coordinates Forward (+)

2978801 .. 2981497

Gene Structure 2697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010615

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAAGTCCTCGGAATCGATTTCAGCTGTGCTCTGGGGGCTCTTAGCAACGGCCAGTTTCCCGAGAAGGATTGCTTGCTTCCCCTTATTTCCACGCTGCTCGGCTACGCCATCGTCGCCGCTTCCACCACCGTCAAACTCCCTCAGATATTAAAGATTTTGGAACATGGAAGTATCAGAGGTCTTAGTATTCTGTCTTTTGAGCTTGAACTAGTTGGTTACACGATTGCTTTGGCATATTGTCTTCATGGAGGGCTTCCCTTCTCAGCTTATGGGGAATTGGCTTTTCTTTTGATCCAAGCTCTAATATTAGTTGCCATTATGTACTATTACTCCCAACCTGTGAGCATCAAAAGATGGATGGCGGCATTACTATATTGTGGTATAGCACCAACCATATTAGCAGGTCGAATTGATCCTGTTCTATTTGAAGCTCTATATGCATCACAACATGCAATTTTTCTCTTTGCCAAGATCCCGCAGATATGGCAGAACTTTTCTAACAAAAGTACAGGGGAGCTCAGCTTCTTAACGAACTTTATGAACTTTGGAGGTTCCATGGTGAGAGTTTTCACCAGCATCCAAGAACAAGCTCCAAAAAGTGTTTTGTTGGGCTCTGTACTTGGTGTTGCAACAAATGCCATCCTCCTGAGTCAGATACTTATATACCAAAAGCCAAAATCTCGTGCTGAGAAGGAGAAGAAAACCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

238

Amino Acids

25.92

Weight (kDa)

8.82

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	30 - 89	1.2e-12	PQ loop repeat
PQ-loop	PF04193	151 - 201	4.7e-13	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G07390 AT4G07390 AT5G59470 AT5G59470
fragaria_vesca	FvH4_2g33730
malus_domestica	MD08G1093700.v1.1 MD15G1077400.v1.1
prunus_persica	Prupe.1G430800_v2.0.a1 Prupe.1G430800_v2.0.a1
pyrus_communis	pycom15g07210
rosa_chinensis	RchiOBHm_Chr0c32g0501551 RchiOBHm_Chr6g0308821
rosa_laevigata	RLG00000010615
rosa_multiflora	Rmu_sc0004046.1_g000007
rosa_roxburghii	Rroxscaffold_7G00159890
rosa_rugosa	Rorug06G0368300 Rorug06G0368300
rosa_samantha	Rh3CG360800 Rh3CG366300 Rh5AG388300 Rh6BG489200 Rh6CG494700 Rh6DG480100
rosa_wichuraiana	Rw6G041830 Rw7G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	395
AciI	CCGC	3 cut(s)	120, 365, 479
AclWI	GGATC	3 cut(s)	289, 410, 469
AcoI	YGGCCR	1 cut(s)	52
AfaI	GTAC	3 cut(s)	326, 511, 621
AgsI	TTSAA	2 cut(s)	209, 431
AhlI	ACTAGT	1 cut(s)	211
AluBI	AGCT	8 cut(s)	27, 205, 269, 302, 434, 520, 525, 593
AluI	AGCT	8 cut(s)	27, 205, 269, 302, 434, 520, 525, 593
Alw21I	GWGCWC	2 cut(s)	34, 522
AlwI	GGATC	3 cut(s)	289, 410, 469
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	97
AsuHPI	GGTGA	2 cut(s)	565, 574
AvaI	CYCGRG	1 cut(s)	62
BanII	GRGCYC	3 cut(s)	43, 522, 617
BauI	CACGAG	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	2 cut(s)	34, 522
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	4 cut(s)	119, 351, 355, 650
BceAI	ACGGC	1 cut(s)	67
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	3 cut(s)	98, 120, 366
BlpI	GCTNAGC	1 cut(s)	521
BlsI	GCNGC	3 cut(s)	99, 121, 367
BmeT110I	CYCGRG	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	556
BmsI	GCATC	3 cut(s)	357, 452, 588
BpiI	GAAGAC	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	10, 558
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bse1I	ACTGG	1 cut(s)	55
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	10, 558
BseGI	GGATG	3 cut(s)	366, 579, 642
BseMII	CTCAG	5 cut(s)	158, 279, 535, 641, 681
BseNI	ACTGG	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	54
BshVI	ATCGAT	1 cut(s)	18
BsiHKAI	GWGCWC	2 cut(s)	34, 522
BsiHKCI	CYCGRG	1 cut(s)	62
BsnI	GGCC	1 cut(s)	54
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	4 cut(s)	34, 43, 522, 617
Bsp143I	GATC	3 cut(s)	294, 415, 474
Bsp1720I	GCTNAGC	1 cut(s)	521
Bsp19I	CCATGG	1 cut(s)	558
BspACI	CCGC	3 cut(s)	120, 365, 479
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	5 cut(s)	157, 278, 534, 642, 682
BspDI	ATCGAT	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	556
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	3 cut(s)	289, 410, 469
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	10, 558
BssMI	GATC	3 cut(s)	294, 415, 474
BssSI	CACGAG	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	558
Bst2BI	CACGAG	1 cut(s)	684
Bst4CI	ACNGT	1 cut(s)	133
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	7 cut(s)	44, 144, 185, 265, 521, 650, 690
BstDSI	CCRYGG	1 cut(s)	558
BstF5I	GGATG	3 cut(s)	366, 579, 642
BstKTI	GATC	3 cut(s)	297, 418, 477
BstMBI	GATC	3 cut(s)	294, 415, 474
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 116, 440, 487, 638
BstNSI	RCATGY	1 cut(s)	455
BstV1I	GCAGC	1 cut(s)	84
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	474
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	54
BsuTUI	ATCGAT	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	558
BtsCI	GGATG	3 cut(s)	366, 579, 642
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	77
ClaI	ATCGAT	1 cut(s)	18
Csp6I	GTAC	3 cut(s)	325, 510, 620
CviAII	CATG	4 cut(s)	167, 248, 452, 559
CviQI	GTAC	3 cut(s)	325, 510, 620
DdeI	CTNAG	7 cut(s)	44, 144, 185, 265, 521, 650, 690
DpnI	GATC	3 cut(s)	296, 417, 476
DpnII	GATC	3 cut(s)	294, 415, 474
EaeI	YGGCCR	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	558
Eco24I	GRGCYC	3 cut(s)	43, 522, 617
Eco53kI	GAGCTC	1 cut(s)	520
Eco88I	CYCGRG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	558
EcoT22I	ATGCAT	1 cut(s)	445
EcoT38I	GRGCYC	3 cut(s)	43, 522, 617
ErhI	CCWWGG	1 cut(s)	558
FaeI	CATG	4 cut(s)	170, 251, 455, 562
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	4 cut(s)	166, 247, 451, 558
FauI	CCCGC	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	98, 120, 366
FokI	GGATG	3 cut(s)	373, 566, 629
FriOI	GRGCYC	3 cut(s)	43, 522, 617
Fsp4HI	GCNGC	3 cut(s)	98, 120, 366
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	3 cut(s)	98, 120, 366
HaeIII	GGCC	1 cut(s)	54
Hin1II	CATG	4 cut(s)	170, 251, 455, 562
HinfI	GANTC	2 cut(s)	15, 652
HphI	GGTGA	2 cut(s)	565, 574
Hpy188I	TCNGA	4 cut(s)	14, 147, 179, 657
Hpy188III	TCNNGA	2 cut(s)	62, 649
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	61, 271, 688
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	443, 455, 632
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 116, 440, 487, 638
HpyF3I	CTNAG	7 cut(s)	44, 144, 185, 265, 521, 650, 690
Hsp92II	CATG	4 cut(s)	170, 251, 455, 562
Kzo9I	GATC	3 cut(s)	294, 415, 474
LmnI	GCTCC	2 cut(s)	517, 598
LpnPI	CCDG	8 cut(s)	20, 68, 354, 390, 432, 498, 589, 662
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	3 cut(s)	357, 452, 588
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	3 cut(s)	296, 417, 476
MboI	GATC	3 cut(s)	294, 415, 474
MboII	GAAGA	2 cut(s)	236, 712
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	4 cut(s)	34, 43, 522, 617
MluCI	AATT	3 cut(s)	278, 411, 456
MlyI	GAGTC	1 cut(s)	661
MnlI	CCTC	6 cut(s)	20, 153, 173, 245, 545, 656
Mph1103I	ATGCAT	1 cut(s)	445
MseI	TTAA	2 cut(s)	152, 530
MspA1I	CMGCKG	1 cut(s)	27
MwoI	GCNNNNNNNGC	5 cut(s)	38, 116, 440, 487, 638
NcoI	CCATGG	1 cut(s)	558
NdeII	GATC	3 cut(s)	294, 415, 474
NlaIII	CATG	4 cut(s)	170, 251, 455, 562
NlaIV	GGNNCC	1 cut(s)	556
NmeAIII	GCCGAG	1 cut(s)	81
NsiI	ATGCAT	1 cut(s)	445
NspI	RCATGY	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	99, 121, 367
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
Psp124BI	GAGCTC	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	474
PvuII	CAGCTG	1 cut(s)	27
RsaI	GTAC	3 cut(s)	326, 511, 621
RsaNI	GTAC	3 cut(s)	325, 510, 620
SacI	GAGCTC	1 cut(s)	522
SaqAI	TTAA	2 cut(s)	152, 530
SatI	GCNGC	3 cut(s)	98, 120, 366
Sau3AI	GATC	3 cut(s)	294, 415, 474
SchI	GAGTC	1 cut(s)	661
SduI	GDGCHC	4 cut(s)	34, 43, 522, 617
SfaNI	GCATC	3 cut(s)	357, 452, 588
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	3 cut(s)	278, 411, 456
SsiI	CCGC	3 cut(s)	120, 365, 479
SspI	AATATT	1 cut(s)	309
SspMI	CTAG	1 cut(s)	212
SstI	GAGCTC	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	18, 409
TasI	AATT	3 cut(s)	278, 411, 456
TatI	WGTACW	3 cut(s)	324, 509, 619
TauI	GCSGC	2 cut(s)	122, 368
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	2 cut(s)	152, 530
Tru9I	TTAA	2 cut(s)	152, 530
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	3 cut(s)	17, 236, 557
XceI	RCATGY	1 cut(s)	455
XspI	CTAG	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.