Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007362

Physical Location & Seq

Genomic Coordinates Reverse (-)

64481082 .. 64483690

Gene Structure 2609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG480100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAAGTCCTCGGAATCGATTTCACCTGTGCTTTAGGGGCTCTTAGCAACGGCCAGTTTCCCGAGAAGGATTGCTTGCTTCCACTTATTTCCACGCTCCTCGGCTACGCCATCGTCGCCGCTTCCACCACCGTCAAACTCCCTCAGATATTAAAGATTTTGGAAAATGGAAGTATCAGAGGTCTTAGTATCTTGTCTTTTGAGCTTGAACTAGTTGGTTACACGATTGCTTTGGCATATTGTCTTCATGGAGGGCTTCCCTTCTCAGCTTATGGGGAACTGGCTTTTCTTTTGATCCAAGCTCTAATATTAGTTGCCATTATGTACTATTACTCCCAACCTGTGAGCATCAAAAGATGGATGACGGCATTACTATATTGTGGTATAGCACCAACCATATTAGCAGGTCGAATTGATCCTGTTCTATTTGAAGCTCTATATGCATCACAACATGCAATTTTTCTCTTTGCCAAGATCCCGCAGATATGGCAGAACTTTTCTAACAAAAGTACAGGGGAGCTCAGCTTCTTAACGAACTTTATGAACTTTGGAGGTTCTATGGTGAGAGTTTTCACCAGCATCCAAGAACAAGCTCCAAAAAGTGTTTTGTTGGGCTCTGTACTTGGTGTTGCAACAAATGCCATCCTCCTGAGTCAGATACTTATATACCAAAAGCCAAAATCTCGTGCTGAGAAGGAGAAGAAAACGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

237

Amino Acids

25.94

Weight (kDa)

8.82

Isoelectric Point (pI)

31.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	30 - 89	5.2e-13	PQ loop repeat
PQ-loop	PF04193	151 - 201	4.7e-13	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G07390 AT4G07390 AT5G59470 AT5G59470
fragaria_vesca	FvH4_2g33730
malus_domestica	MD08G1093700.v1.1 MD15G1077400.v1.1
prunus_persica	Prupe.1G430800_v2.0.a1 Prupe.1G430800_v2.0.a1
pyrus_communis	pycom15g07210
rosa_chinensis	RchiOBHm_Chr0c32g0501551 RchiOBHm_Chr6g0308821
rosa_laevigata	RLG00000010615
rosa_multiflora	Rmu_sc0004046.1_g000007
rosa_roxburghii	Rroxscaffold_7G00159890
rosa_rugosa	Rorug06G0368300 Rorug06G0368300
rosa_samantha	Rh3CG360800 Rh3CG366300 Rh5AG388300 Rh6BG489200 Rh6CG494700 Rh6DG480100
rosa_wichuraiana	Rw6G041830 Rw7G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	395
AciI	CCGC	2 cut(s)	120, 479
AclWI	GGATC	3 cut(s)	289, 410, 469
AcoI	YGGCCR	1 cut(s)	52
AfaI	GTAC	3 cut(s)	326, 511, 621
AgsI	TTSAA	2 cut(s)	209, 431
AhlI	ACTAGT	1 cut(s)	211
AluBI	AGCT	7 cut(s)	205, 269, 302, 434, 520, 525, 593
AluI	AGCT	7 cut(s)	205, 269, 302, 434, 520, 525, 593
Alw21I	GWGCWC	1 cut(s)	522
AlwI	GGATC	3 cut(s)	289, 410, 469
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	1 cut(s)	52
AsuHPI	GGTGA	3 cut(s)	16, 565, 574
AvaI	CYCGRG	1 cut(s)	62
BanII	GRGCYC	3 cut(s)	43, 522, 617
BauI	CACGAG	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	1 cut(s)	522
BccI	CCATC	3 cut(s)	119, 351, 650
BceAI	ACGGC	2 cut(s)	67, 381
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	1 cut(s)	120
BlpI	GCTNAGC	1 cut(s)	521
BlsI	GCNGC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	62
BmsI	GCATC	3 cut(s)	357, 452, 588
BpiI	GAAGAC	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	10, 100
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bse1I	ACTGG	2 cut(s)	55, 285
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	10, 100
BseGI	GGATG	3 cut(s)	366, 579, 642
BseMII	CTCAG	5 cut(s)	158, 279, 535, 641, 681
BseNI	ACTGG	2 cut(s)	55, 285
BseRI	GAGGAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	54
BshVI	ATCGAT	1 cut(s)	18
BsiHKAI	GWGCWC	1 cut(s)	522
BsiHKCI	CYCGRG	1 cut(s)	62
BsnI	GGCC	1 cut(s)	54
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	3 cut(s)	43, 522, 617
Bsp143I	GATC	3 cut(s)	294, 415, 474
Bsp1720I	GCTNAGC	1 cut(s)	521
BspACI	CCGC	2 cut(s)	120, 479
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	5 cut(s)	157, 278, 534, 642, 682
BspDI	ATCGAT	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	3 cut(s)	289, 410, 469
BsrI	ACTGG	2 cut(s)	55, 285
BssECI	CCNNGG	2 cut(s)	10, 100
BssMI	GATC	3 cut(s)	294, 415, 474
BssSI	CACGAG	1 cut(s)	684
Bst2BI	CACGAG	1 cut(s)	684
Bst4CI	ACNGT	1 cut(s)	133
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	7 cut(s)	44, 144, 185, 265, 521, 650, 690
BstF5I	GGATG	3 cut(s)	366, 579, 642
BstKTI	GATC	3 cut(s)	297, 418, 477
BstMBI	GATC	3 cut(s)	294, 415, 474
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 116, 440, 487, 638
BstNSI	RCATGY	1 cut(s)	455
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	474
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	54
BsuTUI	ATCGAT	1 cut(s)	18
BtsCI	GGATG	3 cut(s)	366, 579, 642
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	77
ClaI	ATCGAT	1 cut(s)	18
Csp6I	GTAC	3 cut(s)	325, 510, 620
CviAII	CATG	2 cut(s)	248, 452
CviQI	GTAC	3 cut(s)	325, 510, 620
DdeI	CTNAG	7 cut(s)	44, 144, 185, 265, 521, 650, 690
DpnI	GATC	3 cut(s)	296, 417, 476
DpnII	GATC	3 cut(s)	294, 415, 474
EaeI	YGGCCR	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	520
Eco24I	GRGCYC	3 cut(s)	43, 522, 617
Eco53kI	GAGCTC	1 cut(s)	520
Eco88I	CYCGRG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	520
EcoT22I	ATGCAT	1 cut(s)	445
EcoT38I	GRGCYC	3 cut(s)	43, 522, 617
FaeI	CATG	2 cut(s)	251, 455
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	2 cut(s)	247, 451
FauI	CCCGC	1 cut(s)	486
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	3 cut(s)	373, 566, 629
FriOI	GRGCYC	3 cut(s)	43, 522, 617
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	54
Hin1II	CATG	2 cut(s)	251, 455
HinfI	GANTC	2 cut(s)	15, 652
HphI	GGTGA	3 cut(s)	16, 565, 574
Hpy188I	TCNGA	4 cut(s)	14, 147, 179, 657
Hpy188III	TCNNGA	2 cut(s)	62, 649
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	61, 271, 688
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	443, 455, 632
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 116, 440, 487, 638
HpyF3I	CTNAG	7 cut(s)	44, 144, 185, 265, 521, 650, 690
Hsp92II	CATG	2 cut(s)	251, 455
Kzo9I	GATC	3 cut(s)	294, 415, 474
LmnI	GCTCC	3 cut(s)	102, 517, 598
LpnPI	CCDG	9 cut(s)	40, 68, 266, 354, 390, 432, 498, 589, 662
LweI	GCATC	3 cut(s)	357, 452, 588
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	3 cut(s)	296, 417, 476
MboI	GATC	3 cut(s)	294, 415, 474
MboII	GAAGA	2 cut(s)	236, 712
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	3 cut(s)	43, 522, 617
MluCI	AATT	2 cut(s)	411, 456
MlyI	GAGTC	1 cut(s)	661
MnlI	CCTC	7 cut(s)	20, 110, 153, 173, 245, 545, 656
Mph1103I	ATGCAT	1 cut(s)	445
MseI	TTAA	2 cut(s)	152, 530
MwoI	GCNNNNNNNGC	5 cut(s)	38, 116, 440, 487, 638
NdeII	GATC	3 cut(s)	294, 415, 474
NlaIII	CATG	2 cut(s)	251, 455
NmeAIII	GCCGAG	1 cut(s)	81
NsiI	ATGCAT	1 cut(s)	445
NspI	RCATGY	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
Psp124BI	GAGCTC	1 cut(s)	522
PsuI	RGATCY	1 cut(s)	474
RsaI	GTAC	3 cut(s)	326, 511, 621
RsaNI	GTAC	3 cut(s)	325, 510, 620
SacI	GAGCTC	1 cut(s)	522
SaqAI	TTAA	2 cut(s)	152, 530
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	3 cut(s)	294, 415, 474
SchI	GAGTC	1 cut(s)	661
SduI	GDGCHC	3 cut(s)	43, 522, 617
SfaNI	GCATC	3 cut(s)	357, 452, 588
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	2 cut(s)	411, 456
SsiI	CCGC	2 cut(s)	120, 479
SspI	AATATT	1 cut(s)	309
SspMI	CTAG	1 cut(s)	212
SstI	GAGCTC	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	18, 409
TasI	AATT	2 cut(s)	411, 456
TatI	WGTACW	3 cut(s)	324, 509, 619
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	2 cut(s)	152, 530
Tru9I	TTAA	2 cut(s)	152, 530
TspDTI	ATGAA	3 cut(s)	17, 236, 557
XceI	RCATGY	1 cut(s)	455
XspI	CTAG	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.