Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007362

Physical Location & Seq

Genomic Coordinates Reverse (-)

5285563 .. 5288778

Gene Structure 3216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1077400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAGGTCCTAGGAATCGATTTCAGCTGCGCCTTGGGGGCTCTCGGCGACGGCCACTTCCCCAACAAAGATTGCTTGCTGCCCCTTGTTTCCAAGCTCCTCGGTTACGCCATCGTCGCCGCCTCCACCACCGTCAAACTCCCTCAGATAATAAAAATTTTGCAACATGGAAGTGTCAGAGGTCTTAGTATTATCTCTTTTGAGCTTGAAGTTGTTGGTTACACCATTGCTCTGGCGTATTGCCTTCATAAGGGGCTTCCATTCTCAGCTTATGGGGAATTGGCCTTTCTTTTGATCCAAGCTCTAATATTGATTGCCATTATCTATTATTACTCCCGACCTATGGGTACCAGAACAGCGATCACGGCATTACTATATTGTGCCATAGCACCAACCGTATTAGCTGGCCAAGTTGATCCTGTTCTCTTTGAAGCTCTATATGCATCCCAGCATGCAATCTTCCTTGGTGCCAAGATCCCACAGATATGGGCGAACTTTTCTAATAAAAGTACAGGGGAGCTTAGCTTCTTAACGAACTTAATGAATTTTGCAGGTTCCATGGTGAGAGTTTTCACCAGCATCCAAGAACAAGCACCCAAAAGTGTTGTGTTGGGCTCCGTAATTGGAATTGCGACAAATTTCACCCTCCTGAGTCAGATACTTATATACCAAAAGGCAAAGCCGCGTGCTGAGAAGGAGAAGAAAACAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

238

Amino Acids

25.66

Weight (kDa)

9.11

Isoelectric Point (pI)

21.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	30 - 89	7.8e-15	PQ loop repeat
PQ-loop	PF04193	151 - 201	2.2e-12	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G07390 AT4G07390 AT5G59470 AT5G59470
fragaria_vesca	FvH4_2g33730
malus_domestica	MD08G1093700.v1.1 MD15G1077400.v1.1
prunus_persica	Prupe.1G430800_v2.0.a1 Prupe.1G430800_v2.0.a1
pyrus_communis	pycom15g07210
rosa_chinensis	RchiOBHm_Chr0c32g0501551 RchiOBHm_Chr6g0308821
rosa_laevigata	RLG00000010615
rosa_multiflora	Rmu_sc0004046.1_g000007
rosa_roxburghii	Rroxscaffold_7G00159890
rosa_rugosa	Rorug06G0368300 Rorug06G0368300
rosa_samantha	Rh3CG360800 Rh3CG366300 Rh5AG388300 Rh6BG489200 Rh6CG494700 Rh6DG480100
rosa_wichuraiana	Rw6G041830 Rw7G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	542
Acc65I	GGTACC	1 cut(s)	347
AccB1I	GGYRCC	2 cut(s)	347, 467
AccII	CGCG	1 cut(s)	685
AciI	CCGC	2 cut(s)	120, 683
AclWI	GGATC	3 cut(s)	289, 410, 469
AcoI	YGGCCR	2 cut(s)	52, 406
AcsI	RAATTY	3 cut(s)	156, 544, 637
AfaI	GTAC	2 cut(s)	349, 511
AfiI	CCNNNNNNNGG	2 cut(s)	250, 343
AgsI	TTSAA	2 cut(s)	209, 431
AluBI	AGCT	9 cut(s)	27, 97, 205, 269, 302, 404, 434, 520, 525
AluI	AGCT	9 cut(s)	27, 97, 205, 269, 302, 404, 434, 520, 525
AlwI	GGATC	3 cut(s)	289, 410, 469
AoxI	GGCC	3 cut(s)	52, 282, 406
ApeKI	GCWGC	2 cut(s)	27, 79
ApoI	RAATTY	3 cut(s)	156, 544, 637
Asp718I	GGTACC	1 cut(s)	347
AspA2I	CCTAGG	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	3 cut(s)	565, 574, 634
AvaII	GGWCC	1 cut(s)	7
AvrII	CCTAGG	1 cut(s)	10
BalI	TGGCCA	1 cut(s)	408
BanI	GGYRCC	2 cut(s)	347, 467
BanII	GRGCYC	2 cut(s)	43, 617
BbvI	GCAGC	2 cut(s)	14, 66
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	2 cut(s)	67, 381
BfaI	CTAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	542
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	4 cut(s)	28, 80, 120, 683
BlnI	CCTAGG	1 cut(s)	10
BlpI	GCTNAGC	1 cut(s)	521
BlsI	GCNGC	4 cut(s)	29, 81, 121, 684
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	4 cut(s)	349, 469, 556, 616
BmsI	GCATC	2 cut(s)	452, 588
Bpu1102I	GCTNAGC	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	18
BsaJI	CCNNGG	5 cut(s)	10, 33, 100, 463, 558
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 343
Bse3DI	GCAATG	1 cut(s)	225
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	5 cut(s)	10, 33, 100, 463, 558
BseGI	GGATG	2 cut(s)	443, 579
BseLI	CCNNNNNNNGG	2 cut(s)	250, 343
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	4 cut(s)	158, 279, 641, 681
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	14, 66
BseYI	CCCAGC	1 cut(s)	447
Bsh1236I	CGCG	1 cut(s)	685
BshFI	GGCC	3 cut(s)	54, 284, 408
BshNI	GGYRCC	2 cut(s)	347, 467
BshVI	ATCGAT	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	250, 343
BsnI	GGCC	3 cut(s)	54, 284, 408
Bsp1286I	GDGCHC	2 cut(s)	43, 617
Bsp143I	GATC	4 cut(s)	294, 360, 415, 474
Bsp1720I	GCTNAGC	1 cut(s)	521
Bsp19I	CCATGG	1 cut(s)	558
BspACI	CCGC	2 cut(s)	120, 683
BspANI	GGCC	3 cut(s)	54, 284, 408
BspCNI	CTCAG	4 cut(s)	157, 278, 642, 682
BspDI	ATCGAT	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	685
BspLI	GGNNCC	4 cut(s)	349, 469, 556, 616
BspMI	ACCTGC	1 cut(s)	542
BspPI	GGATC	3 cut(s)	289, 410, 469
BspT107I	GGYRCC	2 cut(s)	347, 467
BsrDI	GCAATG	1 cut(s)	225
BssECI	CCNNGG	5 cut(s)	10, 33, 100, 463, 558
BssMI	GATC	4 cut(s)	294, 360, 415, 474
BssT1I	CCWWGG	4 cut(s)	10, 33, 463, 558
Bst4CI	ACNGT	2 cut(s)	133, 397
BstC8I	GCNNGC	4 cut(s)	77, 406, 453, 687
BstDEI	CTNAG	6 cut(s)	144, 185, 265, 521, 650, 690
BstDSI	CCRYGG	1 cut(s)	558
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	443, 579
BstFNI	CGCG	1 cut(s)	685
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	4 cut(s)	297, 363, 418, 477
BstMBI	GATC	4 cut(s)	294, 360, 415, 474
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 116, 365, 440
BstNSI	RCATGY	1 cut(s)	455
BstUI	CGCG	1 cut(s)	685
BstV1I	GCAGC	2 cut(s)	14, 66
BstX2I	RGATCY	1 cut(s)	474
BstXI	CCANNNNNNTGG	2 cut(s)	232, 486
BstYI	RGATCY	1 cut(s)	474
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	54, 284, 408
BsuTUI	ATCGAT	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	558
BtsCI	GGATG	2 cut(s)	443, 579
BveI	ACCTGC	1 cut(s)	542
Cac8I	GCNNGC	4 cut(s)	77, 406, 453, 687
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	1 cut(s)	7
ClaI	ATCGAT	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	348, 510
CviAII	CATG	3 cut(s)	167, 452, 559
CviQI	GTAC	2 cut(s)	348, 510
DdeI	CTNAG	6 cut(s)	144, 185, 265, 521, 650, 690
DpnI	GATC	4 cut(s)	296, 362, 417, 476
DpnII	GATC	4 cut(s)	294, 360, 415, 474
EaeI	YGGCCR	2 cut(s)	52, 406
Eco130I	CCWWGG	4 cut(s)	10, 33, 463, 558
Eco24I	GRGCYC	2 cut(s)	43, 617
Eco47I	GGWCC	1 cut(s)	7
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	7
EcoT14I	CCWWGG	4 cut(s)	10, 33, 463, 558
EcoT22I	ATGCAT	1 cut(s)	445
EcoT38I	GRGCYC	2 cut(s)	43, 617
ErhI	CCWWGG	4 cut(s)	10, 33, 463, 558
FaeI	CATG	3 cut(s)	170, 455, 562
FatI	CATG	3 cut(s)	166, 451, 558
Fnu4HI	GCNGC	4 cut(s)	28, 80, 120, 683
FokI	GGATG	2 cut(s)	430, 566
FriOI	GRGCYC	2 cut(s)	43, 617
Fsp4HI	GCNGC	4 cut(s)	28, 80, 120, 683
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	4 cut(s)	28, 80, 120, 683
GsaI	CCCAGC	1 cut(s)	451
HaeIII	GGCC	3 cut(s)	54, 284, 408
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	170, 455, 562
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	2 cut(s)	15, 652
HphI	GGTGA	3 cut(s)	565, 574, 634
Hpy188I	TCNGA	3 cut(s)	147, 179, 657
Hpy188III	TCNNGA	2 cut(s)	336, 649
Hpy99I	CGWCG	2 cut(s)	53, 119
HpyAV	CCTTC	2 cut(s)	254, 688
HpyCH4III	ACNGT	2 cut(s)	133, 397
HpyCH4V	TGCA	4 cut(s)	163, 443, 455, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 116, 365, 440
HpyF3I	CTNAG	6 cut(s)	144, 185, 265, 521, 650, 690
Hsp92II	CATG	3 cut(s)	170, 455, 562
HspAI	GCGC	1 cut(s)	30
KpnI	GGTACC	1 cut(s)	351
Kzo9I	GATC	4 cut(s)	294, 360, 415, 474
LmnI	GCTCC	3 cut(s)	102, 517, 620
LpnPI	CCDG	9 cut(s)	218, 364, 390, 432, 461, 498, 537, 589, 662
Lsp1109I	GCAGC	2 cut(s)	14, 66
LweI	GCATC	2 cut(s)	452, 588
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	104, 218
MalI	GATC	4 cut(s)	296, 362, 417, 476
MboI	GATC	4 cut(s)	294, 360, 415, 474
MboII	GAAGA	2 cut(s)	451, 712
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	2 cut(s)	43, 617
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	6 cut(s)	156, 278, 544, 621, 627, 637
MluNI	TGGCCA	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	661
MnlI	CCTC	5 cut(s)	110, 133, 153, 173, 656
Mox20I	TGGCCA	1 cut(s)	408
Mph1103I	ATGCAT	1 cut(s)	445
MscI	TGGCCA	1 cut(s)	408
MseI	TTAA	2 cut(s)	530, 539
MslI	CAYNNNNRTG	2 cut(s)	171, 484
Msp20I	TGGCCA	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	27
MvnI	CGCG	1 cut(s)	685
MwoI	GCNNNNNNNGC	4 cut(s)	38, 116, 365, 440
NcoI	CCATGG	1 cut(s)	558
NdeII	GATC	4 cut(s)	294, 360, 415, 474
NlaIII	CATG	3 cut(s)	170, 455, 562
NlaIV	GGNNCC	4 cut(s)	349, 469, 556, 616
NmeAIII	GCCGAG	1 cut(s)	24
NsiI	ATGCAT	1 cut(s)	445
NspI	RCATGY	1 cut(s)	455
PaeI	GCATGC	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	4 cut(s)	29, 81, 121, 684
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
PspFI	CCCAGC	1 cut(s)	447
PspN4I	GGNNCC	4 cut(s)	349, 469, 556, 616
PspPI	GGNCC	1 cut(s)	7
PspPPI	RGGWCCY	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	474
PvuII	CAGCTG	1 cut(s)	27
RsaI	GTAC	2 cut(s)	349, 511
RsaNI	GTAC	2 cut(s)	348, 510
RseI	CAYNNNNRTG	2 cut(s)	171, 484
SaqAI	TTAA	2 cut(s)	530, 539
SatI	GCNGC	4 cut(s)	28, 80, 120, 683
Sau3AI	GATC	4 cut(s)	294, 360, 415, 474
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	661
SduI	GDGCHC	2 cut(s)	43, 617
SfaNI	GCATC	2 cut(s)	452, 588
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	2 cut(s)	171, 484
SphI	GCATGC	1 cut(s)	455
Sse9I	AATT	6 cut(s)	156, 278, 544, 621, 627, 637
SsiI	CCGC	2 cut(s)	120, 683
SspI	AATATT	1 cut(s)	309
SspMI	CTAG	1 cut(s)	11
StyI	CCWWGG	4 cut(s)	10, 33, 463, 558
TaaI	ACNGT	2 cut(s)	133, 397
TaqI	TCGA	1 cut(s)	18
TasI	AATT	6 cut(s)	156, 278, 544, 621, 627, 637
TatI	WGTACW	1 cut(s)	509
TauI	GCSGC	2 cut(s)	122, 685
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	2 cut(s)	530, 539
Tru9I	TTAA	2 cut(s)	530, 539
TseI	GCWGC	2 cut(s)	27, 79
TspDTI	ATGAA	3 cut(s)	17, 236, 557
TspGWI	ACGGA	1 cut(s)	607
VpaK11BI	GGWCC	1 cut(s)	7
XagI	CCTNNNNNAGG	1 cut(s)	248
XapI	RAATTY	3 cut(s)	156, 544, 637
XceI	RCATGY	1 cut(s)	455
XmaJI	CCTAGG	1 cut(s)	10
XspI	CTAG	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.