Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007362

Physical Location & Seq

Genomic Coordinates Reverse (-)

7780486 .. 7783666

Gene Structure 3181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1093700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAGGTCCTAGGAATCGATTTCAGCTGCGCCTTGGGGGCCCTCGGCGACGGCCACTTCCCCGACAAAGATTGCTTGCTGCCCCTTATTTCCAAGCTCCTCGGCTACGCCATCGTCGCCGCTTCCACCACCGTCAAACTCCCTCAGATAATAAAAATTTTGCAACATGGAAGTGTCAGAGGTCTTAGTATTATCTCTTTTGAGCTTGAAGTAGTTGGTTACACCATTGCTCTGGCGTATTGCCTTCATAAAGGGCTGCCGTTCTCTGCTTATGGGGAATTGGCCTTTCTTTTGATCCAAGCTCTCATATTGATTGCCATTATCTATTATTACTCCCGACCTATGAGTACCAGAACAATGATCACAGCGTTACTATATTGTGCTGTAGCACCAACCATATTAGCTGGCCAGATTGATCCTGTTCTCTTTGAGGCTCTATATGCATCCCAGCATGCAATCTTTCTCAGTGCCAAGATCCCACAGATATGGGCGAACTTCTCTAATAAAAGTACAGGGCAGCTGAGCTTCTTAACGAACTTAATGAATTTTGCAGGTTCCATGGTGAGAGTTTTCACCAGCATCCAAGAACAAGCACCGAAAAGTGTTCTGTTGGGCTCTGTGATTGGCATCGCAACGAATTTTACCCTCCTTAGTCAGATACTGATGTACCAAAAGCAAAAGCCGCGTGCTGGGAAGGGAAAGAAAACGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

238

Amino Acids

25.75

Weight (kDa)

9.33

Isoelectric Point (pI)

25.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	30 - 89	5.9e-15	PQ loop repeat
PQ-loop	PF04193	151 - 201	1.4e-12	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G07390 AT4G07390 AT5G59470 AT5G59470
fragaria_vesca	FvH4_2g33730
malus_domestica	MD08G1093700.v1.1 MD15G1077400.v1.1
prunus_persica	Prupe.1G430800_v2.0.a1 Prupe.1G430800_v2.0.a1
pyrus_communis	pycom15g07210
rosa_chinensis	RchiOBHm_Chr0c32g0501551 RchiOBHm_Chr6g0308821
rosa_laevigata	RLG00000010615
rosa_multiflora	Rmu_sc0004046.1_g000007
rosa_roxburghii	Rroxscaffold_7G00159890
rosa_rugosa	Rorug06G0368300 Rorug06G0368300
rosa_samantha	Rh3CG360800 Rh3CG366300 Rh5AG388300 Rh6BG489200 Rh6CG494700 Rh6DG480100
rosa_wichuraiana	Rw6G041830 Rw7G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	542
AccII	CGCG	1 cut(s)	685
AciI	CCGC	2 cut(s)	120, 683
AclWI	GGATC	3 cut(s)	289, 410, 469
AcoI	YGGCCR	2 cut(s)	52, 406
AcsI	RAATTY	3 cut(s)	156, 544, 637
AfaI	GTAC	3 cut(s)	349, 511, 668
AfiI	CCNNNNNNNGG	1 cut(s)	689
AgsI	TTSAA	1 cut(s)	209
AluBI	AGCT	7 cut(s)	27, 97, 205, 302, 404, 520, 525
AluI	AGCT	7 cut(s)	27, 97, 205, 302, 404, 520, 525
AlwI	GGATC	3 cut(s)	289, 410, 469
AlwNI	CAGNNNCTG	1 cut(s)	661
AoxI	GGCC	4 cut(s)	39, 52, 282, 406
ApaI	GGGCCC	1 cut(s)	43
ApeKI	GCWGC	4 cut(s)	27, 79, 256, 517
ApoI	RAATTY	3 cut(s)	156, 544, 637
AspA2I	CCTAGG	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	3 cut(s)	7, 39, 40
AsuHPI	GGTGA	2 cut(s)	565, 574
AvaII	GGWCC	1 cut(s)	7
AvrII	CCTAGG	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	43
BaeI	ACNNNNGTAYC	4 cut(s)	650, 650, 683, 683
BalI	TGGCCA	1 cut(s)	408
BanII	GRGCYC	2 cut(s)	43, 617
BbvI	GCAGC	4 cut(s)	14, 66, 243, 529
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	2 cut(s)	67, 244
BclI	TGATCA	1 cut(s)	360
BfaI	CTAG	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	542
BglI	GCCNNNNNGGC	1 cut(s)	38
BisI	GCNGC	6 cut(s)	28, 80, 120, 257, 518, 683
BlnI	CCTAGG	1 cut(s)	10
BlpI	GCTNAGC	1 cut(s)	521
BlsI	GCNGC	6 cut(s)	29, 81, 121, 258, 519, 684
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	3 cut(s)	7, 39, 40
BmiI	GGNNCC	3 cut(s)	40, 41, 556
BmsI	GCATC	3 cut(s)	452, 588, 636
Bpu1102I	GCTNAGC	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	626
BsaJI	CCNNGG	5 cut(s)	10, 33, 43, 100, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	689
Bse3DI	GCAATG	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	626
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	5 cut(s)	10, 33, 43, 100, 558
BseGI	GGATG	2 cut(s)	443, 579
BseJI	GATNNNNATC	1 cut(s)	626
BseLI	CCNNNNNNNGG	1 cut(s)	689
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	3 cut(s)	158, 478, 512
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	43
BseXI	GCAGC	4 cut(s)	14, 66, 243, 529
BseYI	CCCAGC	2 cut(s)	447, 689
Bsh1236I	CGCG	1 cut(s)	685
BshFI	GGCC	4 cut(s)	41, 54, 284, 408
BshVI	ATCGAT	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	689
BsnI	GGCC	4 cut(s)	41, 54, 284, 408
Bsp120I	GGGCCC	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	43, 617
Bsp143I	GATC	4 cut(s)	294, 360, 415, 474
Bsp1720I	GCTNAGC	1 cut(s)	521
Bsp19I	CCATGG	1 cut(s)	558
BspACI	CCGC	2 cut(s)	120, 683
BspANI	GGCC	4 cut(s)	41, 54, 284, 408
BspCNI	CTCAG	3 cut(s)	157, 477, 513
BspDI	ATCGAT	1 cut(s)	18
BspFNI	CGCG	1 cut(s)	685
BspLI	GGNNCC	3 cut(s)	40, 41, 556
BspMI	ACCTGC	1 cut(s)	542
BspPI	GGATC	3 cut(s)	289, 410, 469
BsrDI	GCAATG	1 cut(s)	225
BssECI	CCNNGG	5 cut(s)	10, 33, 43, 100, 558
BssMI	GATC	4 cut(s)	294, 360, 415, 474
BssT1I	CCWWGG	3 cut(s)	10, 33, 558
Bst4CI	ACNGT	1 cut(s)	133
BstC8I	GCNNGC	4 cut(s)	77, 406, 453, 687
BstDEI	CTNAG	5 cut(s)	144, 185, 464, 521, 650
BstDSI	CCRYGG	1 cut(s)	558
BstF5I	GGATG	2 cut(s)	443, 579
BstFNI	CGCG	1 cut(s)	685
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	4 cut(s)	297, 363, 418, 477
BstMBI	GATC	4 cut(s)	294, 360, 415, 474
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 116, 440, 682
BstNSI	RCATGY	1 cut(s)	455
BstSFI	CTRYAG	1 cut(s)	384
BstSLI	GKGCMC	1 cut(s)	43
BstUI	CGCG	1 cut(s)	685
BstV1I	GCAGC	4 cut(s)	14, 66, 243, 529
BstX2I	RGATCY	1 cut(s)	474
BstXI	CCANNNNNNTGG	2 cut(s)	232, 486
BstYI	RGATCY	1 cut(s)	474
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	4 cut(s)	41, 54, 284, 408
BsuTUI	ATCGAT	1 cut(s)	18
BtgI	CCRYGG	1 cut(s)	558
BtgZI	GCGATG	1 cut(s)	613
BtsCI	GGATG	2 cut(s)	443, 579
BtsIMutI	CAGTG	1 cut(s)	472
BveI	ACCTGC	1 cut(s)	542
Cac8I	GCNNGC	4 cut(s)	77, 406, 453, 687
CaiI	CAGNNNCTG	1 cut(s)	661
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	3 cut(s)	7, 39, 40
ClaI	ATCGAT	1 cut(s)	18
Csp6I	GTAC	3 cut(s)	348, 510, 667
CviAII	CATG	3 cut(s)	167, 452, 559
CviQI	GTAC	3 cut(s)	348, 510, 667
DdeI	CTNAG	5 cut(s)	144, 185, 464, 521, 650
DpnI	GATC	4 cut(s)	296, 362, 417, 476
DpnII	GATC	4 cut(s)	294, 360, 415, 474
EaeI	YGGCCR	2 cut(s)	52, 406
Eco130I	CCWWGG	3 cut(s)	10, 33, 558
Eco24I	GRGCYC	2 cut(s)	43, 617
Eco47I	GGWCC	1 cut(s)	7
EcoO109I	RGGNCCY	3 cut(s)	7, 39, 40
EcoT14I	CCWWGG	3 cut(s)	10, 33, 558
EcoT22I	ATGCAT	1 cut(s)	445
EcoT38I	GRGCYC	2 cut(s)	43, 617
ErhI	CCWWGG	3 cut(s)	10, 33, 558
FaeI	CATG	3 cut(s)	170, 455, 562
FatI	CATG	3 cut(s)	166, 451, 558
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	6 cut(s)	28, 80, 120, 257, 518, 683
FokI	GGATG	2 cut(s)	430, 566
FriOI	GRGCYC	2 cut(s)	43, 617
Fsp4HI	GCNGC	6 cut(s)	28, 80, 120, 257, 518, 683
FspBI	CTAG	1 cut(s)	11
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	6 cut(s)	28, 80, 120, 257, 518, 683
GsaI	CCCAGC	2 cut(s)	451, 693
HaeIII	GGCC	4 cut(s)	41, 54, 284, 408
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	170, 455, 562
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	15
HphI	GGTGA	2 cut(s)	565, 574
Hpy188I	TCNGA	3 cut(s)	147, 179, 657
Hpy188III	TCNNGA	1 cut(s)	336
Hpy99I	CGWCG	2 cut(s)	53, 119
HpyAV	CCTTC	2 cut(s)	254, 688
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	4 cut(s)	163, 443, 455, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 116, 440, 682
HpyF3I	CTNAG	5 cut(s)	144, 185, 464, 521, 650
Hsp92II	CATG	3 cut(s)	170, 455, 562
HspAI	GCGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	4 cut(s)	294, 360, 415, 474
LmnI	GCTCC	1 cut(s)	102
Lsp1109I	GCAGC	4 cut(s)	14, 66, 243, 529
LweI	GCATC	3 cut(s)	452, 588, 636
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	2 cut(s)	218, 369
MalI	GATC	4 cut(s)	296, 362, 417, 476
MboI	GATC	4 cut(s)	294, 360, 415, 474
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	2 cut(s)	43, 617
MlsI	TGGCCA	1 cut(s)	408
MluCI	AATT	4 cut(s)	156, 278, 544, 637
MluNI	TGGCCA	1 cut(s)	408
MnlI	CCTC	6 cut(s)	53, 110, 153, 173, 424, 656
Mox20I	TGGCCA	1 cut(s)	408
Mph1103I	ATGCAT	1 cut(s)	445
MscI	TGGCCA	1 cut(s)	408
MseI	TTAA	2 cut(s)	530, 539
MslI	CAYNNNNRTG	2 cut(s)	171, 484
Msp20I	TGGCCA	1 cut(s)	408
MspA1I	CMGCKG	2 cut(s)	27, 520
MvnI	CGCG	1 cut(s)	685
MwoI	GCNNNNNNNGC	4 cut(s)	38, 116, 440, 682
NcoI	CCATGG	1 cut(s)	558
NdeII	GATC	4 cut(s)	294, 360, 415, 474
NlaIII	CATG	3 cut(s)	170, 455, 562
NlaIV	GGNNCC	3 cut(s)	40, 41, 556
NmeAIII	GCCGAG	2 cut(s)	24, 81
NsiI	ATGCAT	1 cut(s)	445
NspI	RCATGY	1 cut(s)	455
PaeI	GCATGC	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	6 cut(s)	29, 81, 121, 258, 519, 684
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
PspFI	CCCAGC	2 cut(s)	447, 689
PspN4I	GGNNCC	3 cut(s)	40, 41, 556
PspOMI	GGGCCC	1 cut(s)	39
PspPI	GGNCC	3 cut(s)	7, 39, 40
PspPPI	RGGWCCY	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	661
PsuI	RGATCY	1 cut(s)	474
PvuII	CAGCTG	2 cut(s)	27, 520
RsaI	GTAC	3 cut(s)	349, 511, 668
RsaNI	GTAC	3 cut(s)	348, 510, 667
RseI	CAYNNNNRTG	2 cut(s)	171, 484
SaqAI	TTAA	2 cut(s)	530, 539
SatI	GCNGC	6 cut(s)	28, 80, 120, 257, 518, 683
Sau3AI	GATC	4 cut(s)	294, 360, 415, 474
Sau96I	GGNCC	3 cut(s)	7, 39, 40
SduI	GDGCHC	2 cut(s)	43, 617
SfaNI	GCATC	3 cut(s)	452, 588, 636
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	2 cut(s)	171, 484
SphI	GCATGC	1 cut(s)	455
Sse9I	AATT	4 cut(s)	156, 278, 544, 637
SsiI	CCGC	2 cut(s)	120, 683
SspMI	CTAG	1 cut(s)	11
StyI	CCWWGG	3 cut(s)	10, 33, 558
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	1 cut(s)	18
TasI	AATT	4 cut(s)	156, 278, 544, 637
TatI	WGTACW	1 cut(s)	509
TauI	GCSGC	2 cut(s)	122, 685
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	2 cut(s)	530, 539
Tru9I	TTAA	2 cut(s)	530, 539
TscAI	CASTG	1 cut(s)	472
TseI	GCWGC	4 cut(s)	27, 79, 256, 517
TspDTI	ATGAA	3 cut(s)	17, 236, 557
TspRI	CASTG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	3 cut(s)	156, 544, 637
XceI	RCATGY	1 cut(s)	455
XmaJI	CCTAGG	1 cut(s)	10
XspI	CTAG	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.