Rh3CG360800

Mannose-P-dolichol utilization defect 1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0007362
Physical Location & Seq
Reverse (-)
44795928 .. 44798928
3001 bp
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UTR
Exon/CDS
Intron
Rh3CG360800.1

Sequence Viewer

Length: 468 bp
ATGAAAGTCCTCGGAATCGATTTCAGCTGTGCTCTGGGGGCTCTTAGCAACGGCCAGTTTCCCGAGAAGGATTGCTTGTTTCCCCTTATTTCCACGCTCCTCGGCTACACCATCGTCGCCGCTTCCACCACCGTCAAACTCCCTCAGATATTAAAGATTTTGGAACATGGAAGTATCAGAGGTCTTAGTATCTTGTCTTTGGAGCTTGAACTAGTTGATTACACGATTGCTTTGGCATACTGTCTTCATGGAGGGCTTCCCTTCTCAGCTTATGGGGAACTGGCCTTTCTTTTGATCCAAGCTCGAATATTAGTTGCCATTATGTACTATTACTCCCAACCTGTGAGCATCAAAAGATGGATGACGGCATTACTTGTTACGACTGCAGCCATACTTGGAGTTCTGTATACCGTTGCCGGCAAATTCCAACCGCTGCCTCAAGATATTTATCGCCATGAGCATTACTAA

Protein Analysis

155

Amino Acids

17.1

Weight (kDa)

6.89

Isoelectric Point (pI)

37.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PQ-loop PF04193 30 - 89 1.1e-10 PQ loop repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 407
AciI CCGC 2 cut(s) 120, 431
AclWI GGATC 1 cut(s) 289
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 422
AfaI GTAC 1 cut(s) 326
AgsI TTSAA 1 cut(s) 209
AhlI ACTAGT 1 cut(s) 211
AluBI AGCT 4 cut(s) 27, 205, 269, 302
AluI AGCT 4 cut(s) 27, 205, 269, 302
Alw21I GWGCWC 1 cut(s) 34
AlwI GGATC 1 cut(s) 289
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 2 cut(s) 52, 282
ApeKI GCWGC 2 cut(s) 386, 433
ApoI RAATTY 1 cut(s) 422
AvaI CYCGRG 1 cut(s) 62
BanII GRGCYC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 2 cut(s) 398, 420
BccI CCATC 2 cut(s) 119, 351
BceAI ACGGC 2 cut(s) 67, 381
BcuI ACTAGT 1 cut(s) 211
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 384
BisI GCNGC 3 cut(s) 120, 387, 434
BlsI GCNGC 3 cut(s) 121, 388, 435
BmeT110I CYCGRG 1 cut(s) 62
BmsI GCATC 1 cut(s) 357
BpiI GAAGAC 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 423
Bsa29I ATCGAT 1 cut(s) 18
BsaBI GATNNNNATC 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 10, 100
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bse118I RCCGGY 1 cut(s) 416
Bse1I ACTGG 2 cut(s) 55, 285
Bse8I GATNNNNATC 1 cut(s) 447
BseCI ATCGAT 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 10, 100
BseGI GGATG 1 cut(s) 366
BseJI GATNNNNATC 1 cut(s) 447
BseMII CTCAG 2 cut(s) 158, 279
BseNI ACTGG 2 cut(s) 55, 285
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 2 cut(s) 398, 420
BshFI GGCC 2 cut(s) 54, 284
BshVI ATCGAT 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 34
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 1 cut(s) 417
BsnI GGCC 2 cut(s) 54, 284
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 34, 43
Bsp143I GATC 1 cut(s) 294
BspACI CCGC 2 cut(s) 120, 431
BspANI GGCC 2 cut(s) 54, 284
BspCNI CTCAG 2 cut(s) 157, 278
BspDI ATCGAT 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 388
BspPI GGATC 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 416
BsrI ACTGG 2 cut(s) 55, 285
BssAI RCCGGY 1 cut(s) 416
BssECI CCNNGG 2 cut(s) 10, 100
BssMI GATC 1 cut(s) 294
BssNAI GTATAC 1 cut(s) 408
Bst1107I GTATAC 1 cut(s) 408
Bst4CI ACNGT 3 cut(s) 133, 242, 412
BstC8I GCNNGC 1 cut(s) 418
BstDEI CTNAG 4 cut(s) 44, 144, 185, 265
BstF5I GGATG 1 cut(s) 366
BstKTI GATC 1 cut(s) 297
BstMBI GATC 1 cut(s) 294
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 2 cut(s) 398, 420
BstV2I GAAGAC 1 cut(s) 236
BstZ17I GTATAC 1 cut(s) 408
Bsu15I ATCGAT 1 cut(s) 18
BsuRI GGCC 2 cut(s) 54, 284
BsuTUI ATCGAT 1 cut(s) 18
BtsCI GGATG 1 cut(s) 366
Cac8I GCNNGC 1 cut(s) 418
Cfr10I RCCGGY 1 cut(s) 416
ClaI ATCGAT 1 cut(s) 18
Csp6I GTAC 1 cut(s) 325
CviAII CATG 3 cut(s) 167, 248, 455
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 4 cut(s) 44, 144, 185, 265
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
EaeI YGGCCR 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 62
EcoT38I GRGCYC 1 cut(s) 43
FaeI CATG 3 cut(s) 170, 251, 458
FaiI YATR 8 cut(s) 168, 238, 249, 273, 323, 392, 408, 456
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 3 cut(s) 166, 247, 454
FblI GTMKAC 1 cut(s) 407
Fnu4HI GCNGC 3 cut(s) 120, 387, 434
FokI GGATG 1 cut(s) 373
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 3 cut(s) 120, 387, 434
FspBI CTAG 1 cut(s) 212
GluI GCNGC 3 cut(s) 120, 387, 434
HaeIII GGCC 2 cut(s) 54, 284
HapII CCGG 1 cut(s) 417
Hin1II CATG 3 cut(s) 170, 251, 458
HinfI GANTC 1 cut(s) 15
HpaII CCGG 1 cut(s) 417
Hpy166II GTNNAC 1 cut(s) 408
Hpy188I TCNGA 3 cut(s) 14, 147, 179
Hpy188III TCNNGA 2 cut(s) 62, 440
Hpy8I GTNNAC 1 cut(s) 408
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 61, 271
HpyCH4III ACNGT 3 cut(s) 133, 242, 412
HpyCH4V TGCA 1 cut(s) 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 4 cut(s) 44, 144, 185, 265
Hsp92II CATG 3 cut(s) 170, 251, 458
KroI GCCGGC 1 cut(s) 416
KroNI GCCGGC 1 cut(s) 418
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 2 cut(s) 102, 202
LpnPI CCDG 5 cut(s) 20, 68, 266, 354, 430
Lsp1109I GCAGC 2 cut(s) 398, 420
LweI GCATC 1 cut(s) 357
MaeI CTAG 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 1 cut(s) 236
MhlI GDGCHC 2 cut(s) 34, 43
MluCI AATT 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 451
MnlI CCTC 6 cut(s) 20, 110, 153, 173, 245, 447
MroNI GCCGGC 1 cut(s) 416
MseI TTAA 1 cut(s) 152
MspA1I CMGCKG 2 cut(s) 27, 433
MspI CCGG 1 cut(s) 417
MwoI GCNNNNNNNGC 1 cut(s) 38
NaeI GCCGGC 1 cut(s) 418
NdeII GATC 1 cut(s) 294
NgoMIV GCCGGC 1 cut(s) 416
NlaIII CATG 3 cut(s) 170, 251, 458
NmeAIII GCCGAG 1 cut(s) 81
PdiI GCCGGC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 3 cut(s) 121, 388, 435
PstI CTGCAG 1 cut(s) 388
PvuII CAGCTG 1 cut(s) 27
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 3 cut(s) 120, 387, 434
Sau3AI GATC 1 cut(s) 294
SduI GDGCHC 2 cut(s) 34, 43
SetI ASST 6 cut(s) 29, 184, 207, 271, 304, 343
SfaNI GCATC 1 cut(s) 357
SfcI CTRYAG 1 cut(s) 384
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
SpeI ACTAGT 1 cut(s) 211
Sse9I AATT 1 cut(s) 422
SsiI CCGC 2 cut(s) 120, 431
SspI AATATT 1 cut(s) 309
SspMI CTAG 1 cut(s) 212
TaaI ACNGT 3 cut(s) 133, 242, 412
TaqI TCGA 2 cut(s) 18, 304
TasI AATT 1 cut(s) 422
TatI WGTACW 1 cut(s) 324
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TseI GCWGC 2 cut(s) 386, 433
TspDTI ATGAA 2 cut(s) 17, 236
XapI RAATTY 1 cut(s) 422
XmiI GTMKAC 1 cut(s) 407
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.