Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007362

Physical Location & Seq

Genomic Coordinates Forward (+)

25204421 .. 25207368

Gene Structure 2948 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g33730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAAAGTCCTCGGAATCGATTTCAGCTGTGCTTTGGGGGCTCTCAGCAACGGTCAGTTTCCCGAGAAGGATTGCTTGCTTCCCCTTATTTCCACTCTCCTCGGCTACGCCATCGTCGCCGCCTCCACCACCGTCAAACTCCCTCAGATATTAAAGATTCTGGAAAATGGAAGTATCAGAGGTCTTAGTATCTTGTCTTTTGAGCTTGAACTAGTTGGTTACACGATTGCTTTGGCGTATTGTCTTCATGGAGGGCTTCCCTTCTCCGCCTATGGGGAATTGGCCTTTCTTTTGATCCAAGCTCTAATATTGGTTGCTATTATGTACTATTACTCCCAACCTGTGAGCACCAAAAGATGGATGACGGCATTAATGTATTGTGGTCTAGCACCAACTATTTTAGCAGGTCGAATCGATCCTGTTCTTTTTGAAGCTCTCTATGCATCACAACATGCAATTTTTCTCTTTGCCAAAATCCCACAGATATGGCAGAACTTTTCTAACAAAAGTACAGGGGAGCTCAGCTTCTTAACGAACTTCATGAACTTTGGCGGTTCCATGGTGAGAGTTTTCACCAGCATACAAGAACAAGCTCCAAAAAGTGTTTTGTTGGGCTCTGTACTTGGTGTTGCAACAAATTCCATCCTCCTGAGTCAGATACTTATATACCAAAAGCCAAAATCTCGTGCTGAGAAGGAGAAGAAAAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

238

Amino Acids

25.97

Weight (kDa)

8.97

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	30 - 89	5.2e-13	PQ loop repeat
PQ-loop	PF04193	151 - 201	4.7e-13	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G07390 AT4G07390 AT5G59470 AT5G59470
fragaria_vesca	FvH4_2g33730
malus_domestica	MD08G1093700.v1.1 MD15G1077400.v1.1
prunus_persica	Prupe.1G430800_v2.0.a1 Prupe.1G430800_v2.0.a1
pyrus_communis	pycom15g07210
rosa_chinensis	RchiOBHm_Chr0c32g0501551 RchiOBHm_Chr6g0308821
rosa_laevigata	RLG00000010615
rosa_multiflora	Rmu_sc0004046.1_g000007
rosa_roxburghii	Rroxscaffold_7G00159890
rosa_rugosa	Rorug06G0368300 Rorug06G0368300
rosa_samantha	Rh3CG360800 Rh3CG366300 Rh5AG388300 Rh6BG489200 Rh6CG494700 Rh6DG480100
rosa_wichuraiana	Rw6G041830 Rw7G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	395
AccB7I	CCANNNNNTGG	1 cut(s)	357
AciI	CCGC	3 cut(s)	120, 267, 552
AclWI	GGATC	2 cut(s)	289, 410
AcsI	RAATTY	1 cut(s)	637
AfaI	GTAC	3 cut(s)	326, 511, 621
AfiI	CCNNNNNNNGG	2 cut(s)	273, 357
AgsI	TTSAA	2 cut(s)	209, 431
AhlI	ACTAGT	1 cut(s)	211
AluBI	AGCT	7 cut(s)	27, 205, 302, 434, 520, 525, 593
AluI	AGCT	7 cut(s)	27, 205, 302, 434, 520, 525, 593
Alw21I	GWGCWC	2 cut(s)	350, 522
AlwI	GGATC	2 cut(s)	289, 410
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	637
AseI	ATTAAT	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	565, 574
AvaI	CYCGRG	1 cut(s)	62
BanII	GRGCYC	3 cut(s)	43, 522, 617
BauI	CACGAG	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	2 cut(s)	350, 522
BccI	CCATC	3 cut(s)	119, 351, 650
BceAI	ACGGC	1 cut(s)	381
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	2 cut(s)	212, 386
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	1 cut(s)	120
BlpI	GCTNAGC	1 cut(s)	521
BlsI	GCNGC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	556
BmsI	GCATC	1 cut(s)	452
BpiI	GAAGAC	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	521
Bsa29I	ATCGAT	2 cut(s)	18, 414
BsaJI	CCNNGG	3 cut(s)	10, 100, 558
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 357
BseCI	ATCGAT	2 cut(s)	18, 414
BseDI	CCNNGG	3 cut(s)	10, 100, 558
BseGI	GGATG	2 cut(s)	366, 642
BseLI	CCNNNNNNNGG	2 cut(s)	273, 357
BseMII	CTCAG	5 cut(s)	58, 158, 535, 641, 681
BseRI	GAGGAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	284
BshVI	ATCGAT	2 cut(s)	18, 414
BsiHKAI	GWGCWC	2 cut(s)	350, 522
BsiHKCI	CYCGRG	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	273, 357
BsnI	GGCC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	4 cut(s)	43, 350, 522, 617
Bsp143I	GATC	2 cut(s)	294, 415
Bsp1720I	GCTNAGC	1 cut(s)	521
Bsp19I	CCATGG	1 cut(s)	558
BspACI	CCGC	3 cut(s)	120, 267, 552
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	5 cut(s)	57, 157, 534, 642, 682
BspDI	ATCGAT	2 cut(s)	18, 414
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	1 cut(s)	556
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	2 cut(s)	289, 410
BssECI	CCNNGG	3 cut(s)	10, 100, 558
BssMI	GATC	2 cut(s)	294, 415
BssSI	CACGAG	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	558
Bst2BI	CACGAG	1 cut(s)	684
Bst4CI	ACNGT	2 cut(s)	53, 133
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	6 cut(s)	44, 144, 185, 521, 650, 690
BstDSI	CCRYGG	1 cut(s)	558
BstF5I	GGATG	2 cut(s)	366, 642
BstKTI	GATC	2 cut(s)	297, 418
BstMBI	GATC	2 cut(s)	294, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 116, 440
BstNSI	RCATGY	1 cut(s)	455
BstV2I	GAAGAC	1 cut(s)	236
BstXI	CCANNNNNNTGG	1 cut(s)	486
Bsu15I	ATCGAT	2 cut(s)	18, 414
BsuRI	GGCC	1 cut(s)	284
BsuTUI	ATCGAT	2 cut(s)	18, 414
BtgI	CCRYGG	1 cut(s)	558
BtsCI	GGATG	2 cut(s)	366, 642
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	77
CciI	TCATGA	1 cut(s)	540
ClaI	ATCGAT	2 cut(s)	18, 414
Csp6I	GTAC	3 cut(s)	325, 510, 620
CviAII	CATG	4 cut(s)	248, 452, 541, 559
CviQI	GTAC	3 cut(s)	325, 510, 620
DdeI	CTNAG	6 cut(s)	44, 144, 185, 521, 650, 690
DpnI	GATC	2 cut(s)	296, 417
DpnII	GATC	2 cut(s)	294, 415
EciI	GGCGGA	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	558
Eco24I	GRGCYC	3 cut(s)	43, 522, 617
Eco53kI	GAGCTC	1 cut(s)	520
Eco88I	CYCGRG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	558
EcoT22I	ATGCAT	1 cut(s)	445
EcoT38I	GRGCYC	3 cut(s)	43, 522, 617
ErhI	CCWWGG	1 cut(s)	558
FaeI	CATG	4 cut(s)	251, 455, 544, 562
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	4 cut(s)	247, 451, 540, 558
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	2 cut(s)	373, 629
FriOI	GRGCYC	3 cut(s)	43, 522, 617
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	2 cut(s)	212, 386
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	284
Hin1II	CATG	4 cut(s)	251, 455, 544, 562
HinfI	GANTC	4 cut(s)	15, 157, 411, 652
HphI	GGTGA	2 cut(s)	565, 574
Hpy188I	TCNGA	4 cut(s)	14, 147, 179, 657
Hpy188III	TCNNGA	4 cut(s)	62, 161, 541, 649
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	61, 271, 688
HpyCH4III	ACNGT	2 cut(s)	53, 133
HpyCH4V	TGCA	3 cut(s)	443, 455, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 116, 440
HpyF3I	CTNAG	6 cut(s)	44, 144, 185, 521, 650, 690
Hsp92II	CATG	4 cut(s)	251, 455, 544, 562
Kzo9I	GATC	2 cut(s)	294, 415
LmnI	GCTCC	2 cut(s)	517, 598
LpnPI	CCDG	7 cut(s)	146, 354, 390, 432, 498, 589, 662
LweI	GCATC	1 cut(s)	452
MaeI	CTAG	2 cut(s)	212, 386
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	2 cut(s)	296, 417
MboI	GATC	2 cut(s)	294, 415
MboII	GAAGA	2 cut(s)	236, 712
MhlI	GDGCHC	4 cut(s)	43, 350, 522, 617
MluCI	AATT	3 cut(s)	278, 456, 637
MlyI	GAGTC	1 cut(s)	661
MnlI	CCTC	7 cut(s)	20, 110, 133, 153, 173, 245, 656
Mph1103I	ATGCAT	1 cut(s)	445
MseI	TTAA	3 cut(s)	152, 371, 530
MslI	CAYNNNNRTG	1 cut(s)	484
MspA1I	CMGCKG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	38, 116, 440
NcoI	CCATGG	1 cut(s)	558
NdeII	GATC	2 cut(s)	294, 415
NlaIII	CATG	4 cut(s)	251, 455, 544, 562
NlaIV	GGNNCC	1 cut(s)	556
NmeAIII	GCCGAG	1 cut(s)	81
NsiI	ATGCAT	1 cut(s)	445
NspI	RCATGY	1 cut(s)	455
PagI	TCATGA	1 cut(s)	540
PfeI	GAWTC	3 cut(s)	15, 157, 411
PflMI	CCANNNNNTGG	1 cut(s)	357
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
PshBI	ATTAAT	1 cut(s)	371
Psp124BI	GAGCTC	1 cut(s)	522
PspN4I	GGNNCC	1 cut(s)	556
PvuII	CAGCTG	1 cut(s)	27
RsaI	GTAC	3 cut(s)	326, 511, 621
RsaNI	GTAC	3 cut(s)	325, 510, 620
RseI	CAYNNNNRTG	1 cut(s)	484
SacI	GAGCTC	1 cut(s)	522
SaqAI	TTAA	3 cut(s)	152, 371, 530
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	2 cut(s)	294, 415
SchI	GAGTC	1 cut(s)	661
SduI	GDGCHC	4 cut(s)	43, 350, 522, 617
SfaNI	GCATC	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	484
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	3 cut(s)	278, 456, 637
SsiI	CCGC	3 cut(s)	120, 267, 552
SspI	AATATT	1 cut(s)	309
SspMI	CTAG	2 cut(s)	212, 386
SstI	GAGCTC	1 cut(s)	522
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	2 cut(s)	53, 133
TaqI	TCGA	3 cut(s)	18, 409, 414
TasI	AATT	3 cut(s)	278, 456, 637
TatI	WGTACW	3 cut(s)	324, 509, 619
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	3 cut(s)	15, 157, 411
Tru1I	TTAA	3 cut(s)	152, 371, 530
Tru9I	TTAA	3 cut(s)	152, 371, 530
TspDTI	ATGAA	4 cut(s)	17, 236, 529, 557
Van91I	CCANNNNNTGG	1 cut(s)	357
VspI	ATTAAT	1 cut(s)	371
XapI	RAATTY	1 cut(s)	637
XceI	RCATGY	1 cut(s)	455
XspI	CTAG	2 cut(s)	212, 386
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.