Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0007362

Physical Location & Seq

Genomic Coordinates Reverse (-)

67269514 .. 67272012

Gene Structure 2499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG388300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAAAGTCCTCGGAATCGATTTCAGCTGTGCTCTGGGGGCTCTTAGCAACGGCCAGTTTCCCGAGAAGGATTGCTTGCTTCCCCTTATTTCCACGCTCCTCGGCTACGCCATCGTCGCCGCTTCCACCACCGTCAAACTCCCTCAGATATTAAAGATTTTGGAACATGGAAGTATCAGAGGTCTTAGTATCTTGTCTTTTGAGCTTGAACTAGTTGGTTACACGATTGCTTTGGCATACTGTCTTCATGGAGGGCTTCCCTTCTCAGCTTATGGGGAACTGGCCTTTCTTTTGATCCAAGCTCTAATATTAGTTGCCATTATGTACTATTACTCCCAACCTGTGAGCATCAAAAGATGGATGACGGCATTACTATATTGTGGTATAGCACCAACCATATTAGCAGGTCGAATTGATCCTGTTCTATTTGAAGCTCTATATGCATCACAACATGCAATTTTTCTCTTTGCCAAGATCCCGCAGATATGGCAGAACTTTTCTAACAAAAGTACAGGGGAGCTCAGCTTCTTAACGAACTTTATGAACTTTGGAGGTTCTATGGTGAGAGTTTTCACCAGCATCCAAGAACAAGTCCAAAAAGTGTTTTGTTGGGCTCTATACTTGGTGTGGCAACAAATGCCATCCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006486 GO:0006487 GO:0006488 GO:0006490 GO:0006629 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

216

Amino Acids

23.94

Weight (kDa)

7.61

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	30 - 89	1e-12	PQ loop repeat
PQ-loop	PF04193	151 - 197	2.8e-12	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G07390 AT4G07390 AT5G59470 AT5G59470
fragaria_vesca	FvH4_2g33730
malus_domestica	MD08G1093700.v1.1 MD15G1077400.v1.1
prunus_persica	Prupe.1G430800_v2.0.a1 Prupe.1G430800_v2.0.a1
pyrus_communis	pycom15g07210
rosa_chinensis	RchiOBHm_Chr0c32g0501551 RchiOBHm_Chr6g0308821
rosa_laevigata	RLG00000010615
rosa_multiflora	Rmu_sc0004046.1_g000007
rosa_roxburghii	Rroxscaffold_7G00159890
rosa_rugosa	Rorug06G0368300 Rorug06G0368300
rosa_samantha	Rh3CG360800 Rh3CG366300 Rh5AG388300 Rh6BG489200 Rh6CG494700 Rh6DG480100
rosa_wichuraiana	Rw6G041830 Rw7G029930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	395
AciI	CCGC	2 cut(s)	120, 479
AclWI	GGATC	3 cut(s)	289, 410, 469
AcoI	YGGCCR	1 cut(s)	52
AfaI	GTAC	2 cut(s)	326, 511
AgsI	TTSAA	2 cut(s)	209, 431
AhlI	ACTAGT	1 cut(s)	211
AluBI	AGCT	7 cut(s)	27, 205, 269, 302, 434, 520, 525
AluI	AGCT	7 cut(s)	27, 205, 269, 302, 434, 520, 525
Alw21I	GWGCWC	2 cut(s)	34, 522
AlwI	GGATC	3 cut(s)	289, 410, 469
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	2 cut(s)	52, 282
AsuHPI	GGTGA	2 cut(s)	565, 574
AvaI	CYCGRG	1 cut(s)	62
BanII	GRGCYC	3 cut(s)	43, 522, 616
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	2 cut(s)	34, 522
BccI	CCATC	3 cut(s)	119, 351, 649
BceAI	ACGGC	2 cut(s)	67, 381
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	1 cut(s)	120
BlpI	GCTNAGC	1 cut(s)	521
BlsI	GCNGC	1 cut(s)	121
BmeT110I	CYCGRG	1 cut(s)	62
BmsI	GCATC	3 cut(s)	357, 452, 588
BpiI	GAAGAC	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	10, 100
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bse1I	ACTGG	2 cut(s)	55, 285
BseCI	ATCGAT	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	10, 100
BseGI	GGATG	3 cut(s)	366, 579, 641
BseMII	CTCAG	3 cut(s)	158, 279, 535
BseNI	ACTGG	2 cut(s)	55, 285
BseRI	GAGGAG	1 cut(s)	89
BshFI	GGCC	2 cut(s)	54, 284
BshVI	ATCGAT	1 cut(s)	18
BsiHKAI	GWGCWC	2 cut(s)	34, 522
BsiHKCI	CYCGRG	1 cut(s)	62
BsnI	GGCC	2 cut(s)	54, 284
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	4 cut(s)	34, 43, 522, 616
Bsp143I	GATC	3 cut(s)	294, 415, 474
Bsp1720I	GCTNAGC	1 cut(s)	521
BspACI	CCGC	2 cut(s)	120, 479
BspANI	GGCC	2 cut(s)	54, 284
BspCNI	CTCAG	3 cut(s)	157, 278, 534
BspDI	ATCGAT	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	3 cut(s)	289, 410, 469
BsrI	ACTGG	2 cut(s)	55, 285
BssECI	CCNNGG	2 cut(s)	10, 100
BssMI	GATC	3 cut(s)	294, 415, 474
Bst4CI	ACNGT	2 cut(s)	133, 242
BstAPI	GCANNNNNTGC	1 cut(s)	637
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	5 cut(s)	44, 144, 185, 265, 521
BstF5I	GGATG	3 cut(s)	366, 579, 641
BstKTI	GATC	3 cut(s)	297, 418, 477
BstMBI	GATC	3 cut(s)	294, 415, 474
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 116, 440, 487, 637
BstNSI	RCATGY	1 cut(s)	455
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	474
Bsu15I	ATCGAT	1 cut(s)	18
BsuRI	GGCC	2 cut(s)	54, 284
BsuTUI	ATCGAT	1 cut(s)	18
BtsCI	GGATG	3 cut(s)	366, 579, 641
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	77
ClaI	ATCGAT	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	325, 510
CviAII	CATG	3 cut(s)	167, 248, 452
CviQI	GTAC	2 cut(s)	325, 510
DdeI	CTNAG	5 cut(s)	44, 144, 185, 265, 521
DpnI	GATC	3 cut(s)	296, 417, 476
DpnII	GATC	3 cut(s)	294, 415, 474
EaeI	YGGCCR	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	520
Eco24I	GRGCYC	3 cut(s)	43, 522, 616
Eco53kI	GAGCTC	1 cut(s)	520
Eco88I	CYCGRG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	520
EcoT22I	ATGCAT	1 cut(s)	445
EcoT38I	GRGCYC	3 cut(s)	43, 522, 616
FaeI	CATG	3 cut(s)	170, 251, 455
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	3 cut(s)	166, 247, 451
FauI	CCCGC	1 cut(s)	486
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	3 cut(s)	373, 566, 628
FriOI	GRGCYC	3 cut(s)	43, 522, 616
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	54, 284
Hin1II	CATG	3 cut(s)	170, 251, 455
HinfI	GANTC	1 cut(s)	15
HphI	GGTGA	2 cut(s)	565, 574
Hpy188I	TCNGA	3 cut(s)	14, 147, 179
Hpy188III	TCNNGA	2 cut(s)	62, 648
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	2 cut(s)	61, 271
HpyCH4III	ACNGT	2 cut(s)	133, 242
HpyCH4V	TGCA	2 cut(s)	443, 455
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 116, 440, 487, 637
HpyF3I	CTNAG	5 cut(s)	44, 144, 185, 265, 521
Hsp92II	CATG	3 cut(s)	170, 251, 455
Kzo9I	GATC	3 cut(s)	294, 415, 474
LmnI	GCTCC	2 cut(s)	102, 517
LpnPI	CCDG	8 cut(s)	20, 68, 266, 354, 390, 432, 498, 589
LweI	GCATC	3 cut(s)	357, 452, 588
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	3 cut(s)	296, 417, 476
MboI	GATC	3 cut(s)	294, 415, 474
MboII	GAAGA	1 cut(s)	236
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	4 cut(s)	34, 43, 522, 616
MluCI	AATT	2 cut(s)	411, 456
MnlI	CCTC	6 cut(s)	20, 110, 153, 173, 245, 545
Mph1103I	ATGCAT	1 cut(s)	445
MseI	TTAA	2 cut(s)	152, 530
MspA1I	CMGCKG	1 cut(s)	27
MwoI	GCNNNNNNNGC	5 cut(s)	38, 116, 440, 487, 637
NdeII	GATC	3 cut(s)	294, 415, 474
NlaIII	CATG	3 cut(s)	170, 251, 455
NmeAIII	GCCGAG	1 cut(s)	81
NsiI	ATGCAT	1 cut(s)	445
NspI	RCATGY	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	522
PsuI	RGATCY	1 cut(s)	474
PvuII	CAGCTG	1 cut(s)	27
RsaI	GTAC	2 cut(s)	326, 511
RsaNI	GTAC	2 cut(s)	325, 510
SacI	GAGCTC	1 cut(s)	522
SaqAI	TTAA	2 cut(s)	152, 530
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	3 cut(s)	294, 415, 474
SduI	GDGCHC	4 cut(s)	34, 43, 522, 616
SfaNI	GCATC	3 cut(s)	357, 452, 588
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	2 cut(s)	411, 456
SsiI	CCGC	2 cut(s)	120, 479
SspI	AATATT	1 cut(s)	309
SspMI	CTAG	1 cut(s)	212
SstI	GAGCTC	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	133, 242
TaqI	TCGA	2 cut(s)	18, 409
TasI	AATT	2 cut(s)	411, 456
TatI	WGTACW	2 cut(s)	324, 509
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	2 cut(s)	152, 530
Tru9I	TTAA	2 cut(s)	152, 530
TspDTI	ATGAA	3 cut(s)	17, 236, 557
XceI	RCATGY	1 cut(s)	455
XspI	CTAG	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.