Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006516

Physical Location & Seq

Genomic Coordinates Reverse (-)

5551315 .. 5553216

Gene Structure 1902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G08690.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAACACTAATCCAGTGACTAATGGGTTTGTTAAACCTGTTCCTACTGAAGAAGAACAAGCAAAGATTGAGGAAGTGAGGAAGCTATTAGGTCCATTACCGGAGAAGCTTTCGAGTTTTTGTTCCGATGATGCAGTTTTAAGGTATCTAAGGGCAAGGAATTGGCATGTCAAGAAAGCTACTAAGATGCTTAAAGAAACTTTGAAATGGAGAGTTCAATACAAACCTGAGGAGATTTGTTGGGAGGAAGTAGCTGGTGAAGCAGAGACAGGGAAGATATATAGATCGAGTTGTGTCGATAAACTTGGACGACCTGTTCTCATTATGAGACCGAGTGTTGAGAATTCTAAATCGGTGAAAGGCCAGATTAGATACCTTGTGTATTGTATGGAGAATGCAGTACAAAATTTGCCACCAGGGGAAGAACAGATGGTGTGGATGATAGATTTTCACGGTTATAGTTTGGCGAATGTATCGTTACGAACAACGAAAGAAACCGCTCATGTATTACAAGAACATTACCCTGAGAGATTAGCTTTTGCTGTTCTCTACAATCCTCCTAAGTTCTTTGAACCTTTCTGGAAGGTGGCGCGGCCCTTCTTAGAGCCGAAGACACGGAACAAAGTGAAGTTTGTTTACTCGGATGATCCAAACACTAAGGTGATAATGGAGGAGAACTTTGATATGGAGAAAATGGAGTTAGCGTTTGGTGGTAACGATGACTCGGGTTTTAACATAGAGAAACATTCAGAGAGAATGAAAGAGGACGACAAGAAAAGATTGGCTTCGTTGGAGGGCATTGTTTCCGCTTCTCTAGACTCGCTCAGCATTTTATCGGTCTCTGATGGTACCGCCTCTAACAGTGCTCACCCTAGCTCTCATGATGTCTCTGAGGATGAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

301

Amino Acids

34.43

Weight (kDa)

5.85

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	41 - 66	4.1e-08	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	90 - 238	6.8e-34	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	103 - 216	2.2e-07	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08690 AT4G08690 AT4G08690
fragaria_vesca	FvH4_5g37870 FvH4_5g37870 FvH4_5g37870
malus_domestica	MD08G1179500.v1.1 MD15G1364800.v1.1
prunus_persica	Prupe.1G512800_v2.0.a1
pyrus_communis	pycom08g15370 pycom15g32720
rosa_chinensis	RchiOBHm_Chr7g0239851
rosa_laevigata	RLG00000000725
rosa_multiflora	Rmu_co8357749.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220760
rosa_rugosa	Rorug07G0330100 Rorug07G0330200 Rorug07G0330300 Rorug07G0330400 Rorug07G0330500 Rorug07G0330500
rosa_samantha	Rh7AG484000 Rh7BG457100 Rh7CG501500 Rh7DG469700
rosa_wichuraiana	Rw7G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	848
AccB1I	GGYRCC	1 cut(s)	848
AccBSI	CCGCTC	1 cut(s)	500
AccII	CGCG	1 cut(s)	592
AciI	CCGC	4 cut(s)	498, 592, 807, 852
AclWI	GGATC	1 cut(s)	641
AcsI	RAATTY	2 cut(s)	343, 406
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	2 cut(s)	402, 850
AgsI	TTSAA	3 cut(s)	205, 218, 572
AjnI	CCWGG	1 cut(s)	415
AleI	CACNNNNGTG	1 cut(s)	659
AloI	GAACNNNNNNTCC	2 cut(s)	300, 332
AluBI	AGCT	6 cut(s)	85, 109, 179, 254, 536, 876
AluI	AGCT	6 cut(s)	85, 109, 179, 254, 536, 876
Alw21I	GWGCWC	1 cut(s)	868
Alw26I	GTCTC	4 cut(s)	260, 322, 844, 892
AlwI	GGATC	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	724
AoxI	GGCC	2 cut(s)	361, 593
ApoI	RAATTY	2 cut(s)	343, 406
Asp718I	GGTACC	1 cut(s)	848
AspLEI	GCGC	1 cut(s)	592
AspS9I	GGNCC	2 cut(s)	92, 594
AsuHPI	GGTGA	4 cut(s)	269, 367, 673, 860
AvaI	CYCGRG	1 cut(s)	724
AvaII	GGWCC	1 cut(s)	92
AxyI	CCTNAGG	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	848
BarI	GAAGNNNNNNTAC	2 cut(s)	620, 652
BbsI	GAAGAC	1 cut(s)	617
Bbv12I	GWGCWC	1 cut(s)	868
BccI	CCATC	2 cut(s)	424, 839
BciT130I	CCWGG	1 cut(s)	417
BcoDI	GTCTC	4 cut(s)	260, 322, 844, 892
BfaI	CTAG	2 cut(s)	815, 873
BisI	GCNGC	1 cut(s)	593
BlpI	GCTNAGC	1 cut(s)	824
BlsI	GCNGC	1 cut(s)	594
Bme1390I	CCNGG	1 cut(s)	417
Bme18I	GGWCC	1 cut(s)	92
BmeT110I	CYCGRG	1 cut(s)	724
BmgT120I	GGNCC	2 cut(s)	92, 594
BmiI	GGNNCC	1 cut(s)	850
BmrFI	CCNGG	1 cut(s)	417
BmsI	GCATC	2 cut(s)	121, 177
BpiI	GAAGAC	1 cut(s)	617
Bpu1102I	GCTNAGC	1 cut(s)	824
BsaI	GGTCTC	2 cut(s)	322, 844
BsaJI	CCNNGG	1 cut(s)	416
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	689, 719
Bse1I	ACTGG	1 cut(s)	14
Bse21I	CCTNAGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	416
BseGI	GGATG	3 cut(s)	444, 649, 901
BseMII	CTCAG	4 cut(s)	219, 516, 838, 882
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	2 cut(s)	245, 686
Bsh1236I	CGCG	1 cut(s)	592
BshFI	GGCC	2 cut(s)	363, 595
BshNI	GGYRCC	1 cut(s)	848
BsiHKAI	GWGCWC	1 cut(s)	868
BsiHKCI	CYCGRG	1 cut(s)	724
BsiSI	CCGG	1 cut(s)	101
BsmAI	GTCTC	4 cut(s)	260, 322, 844, 892
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	363, 595
Bso31I	GGTCTC	2 cut(s)	322, 844
BsoBI	CYCGRG	1 cut(s)	724
Bsp1286I	GDGCHC	1 cut(s)	868
Bsp143I	GATC	2 cut(s)	284, 646
Bsp1720I	GCTNAGC	1 cut(s)	824
BspACI	CCGC	4 cut(s)	498, 592, 807, 852
BspANI	GGCC	2 cut(s)	363, 595
BspCNI	CTCAG	4 cut(s)	220, 517, 837, 883
BspFNI	CGCG	1 cut(s)	592
BspHI	TCATGA	1 cut(s)	880
BspLI	GGNNCC	1 cut(s)	850
BspPI	GGATC	1 cut(s)	641
BspT107I	GGYRCC	1 cut(s)	848
BspTNI	GGTCTC	2 cut(s)	322, 844
BsrBI	CCGCTC	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	416
BssMI	GATC	2 cut(s)	284, 646
Bst2UI	CCWGG	1 cut(s)	417
Bst4CI	ACNGT	2 cut(s)	455, 863
BstDEI	CTNAG	9 cut(s)	149, 183, 228, 525, 561, 601, 657, 824, 891
BstF5I	GGATG	3 cut(s)	444, 649, 901
BstFNI	CGCG	1 cut(s)	592
BstHHI	GCGC	1 cut(s)	592
BstKTI	GATC	2 cut(s)	287, 649
BstMAI	GTCTC	4 cut(s)	260, 322, 844, 892
BstMBI	GATC	2 cut(s)	284, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	417
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	415
BstUI	CGCG	1 cut(s)	592
BstV2I	GAAGAC	1 cut(s)	617
Bsu36I	CCTNAGG	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	363, 595
BtsCI	GGATG	3 cut(s)	444, 649, 901
BtsIMutI	CAGTG	2 cut(s)	21, 868
CciI	TCATGA	1 cut(s)	880
CfoI	GCGC	1 cut(s)	592
Cfr13I	GGNCC	2 cut(s)	92, 594
Csp6I	GTAC	2 cut(s)	401, 849
CviAII	CATG	3 cut(s)	167, 503, 881
CviQI	GTAC	2 cut(s)	401, 849
DdeI	CTNAG	9 cut(s)	149, 183, 228, 525, 561, 601, 657, 824, 891
DpnI	GATC	2 cut(s)	286, 648
DpnII	GATC	2 cut(s)	284, 646
Eco31I	GGTCTC	2 cut(s)	322, 844
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	69
Eco81I	CCTNAGG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	724
EcoRI	GAATTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	415
FaeI	CATG	3 cut(s)	170, 506, 884
FalI	AAGNNNNNCTT	2 cut(s)	769, 801
FatI	CATG	3 cut(s)	166, 502, 880
Fnu4HI	GCNGC	1 cut(s)	593
FokI	GGATG	2 cut(s)	451, 656
Fsp4HI	GCNGC	1 cut(s)	593
FspBI	CTAG	2 cut(s)	815, 873
GlaI	GCGC	1 cut(s)	591
GluI	GCNGC	1 cut(s)	593
HaeIII	GGCC	2 cut(s)	363, 595
HapII	CCGG	1 cut(s)	101
HhaI	GCGC	1 cut(s)	592
Hin1II	CATG	3 cut(s)	170, 506, 884
Hin6I	GCGC	1 cut(s)	590
HinP1I	GCGC	1 cut(s)	590
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	2 cut(s)	722, 818
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	4 cut(s)	269, 367, 673, 860
Hpy166II	GTNNAC	1 cut(s)	637
Hpy188I	TCNGA	5 cut(s)	127, 643, 751, 844, 892
Hpy188III	TCNNGA	4 cut(s)	172, 580, 815, 881
Hpy8I	GTNNAC	1 cut(s)	637
HpyAV	CCTTC	2 cut(s)	577, 607
HpyCH4III	ACNGT	2 cut(s)	455, 863
HpyCH4V	TGCA	2 cut(s)	134, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	9 cut(s)	149, 183, 228, 525, 561, 601, 657, 824, 891
Hsp92II	CATG	3 cut(s)	170, 506, 884
HspAI	GCGC	1 cut(s)	590
KpnI	GGTACC	1 cut(s)	852
Kzo9I	GATC	2 cut(s)	284, 646
LweI	GCATC	2 cut(s)	121, 177
MaeI	CTAG	2 cut(s)	815, 873
MaeIII	GTNAC	3 cut(s)	16, 477, 713
MalI	GATC	2 cut(s)	286, 648
MbiI	CCGCTC	1 cut(s)	500
MboI	GATC	2 cut(s)	284, 646
MboII	GAAGA	5 cut(s)	62, 65, 286, 434, 622
MhlI	GDGCHC	1 cut(s)	868
MluCI	AATT	3 cut(s)	160, 343, 406
MlyI	GAGTC	2 cut(s)	716, 812
MmeI	TCCRAC	1 cut(s)	771
MseI	TTAA	5 cut(s)	33, 140, 192, 732, 904
MslI	CAYNNNNRTG	1 cut(s)	659
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	417
Mva1269I	GAATGC	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	417
MvnI	CGCG	1 cut(s)	592
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	2 cut(s)	284, 646
NlaIII	CATG	3 cut(s)	170, 506, 884
NlaIV	GGNNCC	1 cut(s)	850
NmuCI	GTSAC	1 cut(s)	16
NspI	RCATGY	1 cut(s)	170
OliI	CACNNNNGTG	1 cut(s)	659
PagI	TCATGA	1 cut(s)	880
PctI	GAATGC	1 cut(s)	400
PkrI	GCNGC	1 cut(s)	594
PleI	GAGTC	2 cut(s)	716, 812
PpsI	GAGTC	2 cut(s)	716, 812
Psp6I	CCWGG	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	850
PspPI	GGNCC	2 cut(s)	92, 594
RsaI	GTAC	2 cut(s)	402, 850
RsaNI	GTAC	2 cut(s)	401, 849
RseI	CAYNNNNRTG	1 cut(s)	659
SaqAI	TTAA	5 cut(s)	33, 140, 192, 732, 904
SatI	GCNGC	1 cut(s)	593
Sau3AI	GATC	2 cut(s)	284, 646
Sau96I	GGNCC	2 cut(s)	92, 594
SchI	GAGTC	2 cut(s)	716, 812
ScrFI	CCNGG	1 cut(s)	417
SduI	GDGCHC	1 cut(s)	868
SfaNI	GCATC	2 cut(s)	121, 177
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	659
Sse9I	AATT	3 cut(s)	160, 343, 406
SsiI	CCGC	4 cut(s)	498, 592, 807, 852
SspMI	CTAG	2 cut(s)	815, 873
StyD4I	CCNGG	1 cut(s)	415
TaaI	ACNGT	2 cut(s)	455, 863
TaqI	TCGA	3 cut(s)	113, 287, 297
TaqII	GACCGA	2 cut(s)	346, 826
TasI	AATT	3 cut(s)	160, 343, 406
TatI	WGTACW	1 cut(s)	400
TauI	GCSGC	1 cut(s)	595
Tru1I	TTAA	5 cut(s)	33, 140, 192, 732, 904
Tru9I	TTAA	5 cut(s)	33, 140, 192, 732, 904
TscAI	CASTG	2 cut(s)	21, 868
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	17, 773
TspGWI	ACGGA	1 cut(s)	631
TspRI	CASTG	2 cut(s)	21, 868
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	2 cut(s)	343, 406
XbaI	TCTAGA	1 cut(s)	814
XceI	RCATGY	1 cut(s)	170
XspI	CTAG	2 cut(s)	815, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.