Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0006516

Physical Location & Seq

Genomic Coordinates Forward (+)

63239606 .. 63243277

Gene Structure 3672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G040600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAGTGCGGGAATGAAGAAATCTTCGTCAAATGGCTCTGAGAATATTTTAACAAGTGAAGAGCAGCAGGCAAAGATTAGCGAGGTGAGGAAGTTGATAGGGACAGTGCCGGATAAGTTGTCCACATATTGTTCCGATGCATCCATTGCAAGGCATTTAAGGGCAAGGAACTGGAATGTCAAGAAGGCCACAAAAATGTTGAAAGATACCTTGAAATGGAGGTCAGAATACAAACCGGAGGAGATTCGTTGGGAGGACGTAGCTCGTGAAGCTGAGACGGGAAAAATTTACAGATCAAATTATATGGACAAGCATGGGAGACCAGTTCTTGTCATGAGGCCTAGTTGCCAGAACTCAAAGTCAACGAAAGGCCAGATACGATATTTGGTGTATTGCTTGGAGAATGCTATATTAAATCTTCCACCCAACCAGGAACAGATGGTTTGGCTGATTGATTTTCAAGGTTTCAATTTGTCACATATTTCAGTGAAGGTGACACGTGAAACAGCCCATGTTTTGCAAGACCATTATCCAGAACGCCTAGGTCTTGCAATACTCTACAACCCACCCAAGTTTTTTGAGCCATTCTATACGTTAGTAAAGCCCTTTCTAGAGCCAAAGACTTACAATAAAGTGAAGTTTGTGTATGCGGAAGACCTCAACACCAAGAAGATAATGGAGGATCTATTTGATATTGAAAAACTGGAGGCTGCATTTGGCGGAAATGATACTGCAGGTTTTGATATAAATAAGTACGCCGAGAGGATGAAAGAGGATGATAAGACGATTTGCACAGCTGGAAGTCTGCCCCTGGCAGCCTCACAACCTGTTCTGACCAGTGCTGCTCTCTCATTGGATCCTGTCAAGTTAGACTCAAATTCAGATGCTTCTGATAACGAGAAAACAGACAGTTCCTCATCCCATGGCATAGAACCAGAAATTATCTCAGACCACAATATGGCGGTGGCTGCTAGTACCACAAAAGCTGCCAATGATGTAGATCAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

336

Amino Acids

37.82

Weight (kDa)

6.21

Isoelectric Point (pI)

52.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	45 - 69	7.6e-06	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	92 - 241	2.5e-36	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	106 - 215	4.2e-09	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08690 AT4G08690 AT4G08690
fragaria_vesca	FvH4_5g37870 FvH4_5g37870 FvH4_5g37870
malus_domestica	MD08G1179500.v1.1 MD15G1364800.v1.1
prunus_persica	Prupe.1G512800_v2.0.a1
pyrus_communis	pycom08g15370 pycom15g32720
rosa_chinensis	RchiOBHm_Chr7g0239851
rosa_laevigata	RLG00000000725
rosa_multiflora	Rmu_co8357749.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220760
rosa_rugosa	Rorug07G0330100 Rorug07G0330200 Rorug07G0330300 Rorug07G0330400 Rorug07G0330500 Rorug07G0330500
rosa_samantha	Rh7AG484000 Rh7BG457100 Rh7CG501500 Rh7DG469700
rosa_wichuraiana	Rw7G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	725
AccB7I	CCANNNNNTGG	1 cut(s)	958
AciI	CCGC	4 cut(s)	8, 650, 720, 962
AclWI	GGATC	3 cut(s)	690, 851, 864
AcsI	RAATTY	2 cut(s)	285, 877
AcvI	CACGTG	1 cut(s)	500
AfaI	GTAC	2 cut(s)	755, 976
AfiI	CCNNNNNNNGG	3 cut(s)	150, 216, 958
AflIII	ACRYGT	1 cut(s)	497
AgsI	TTSAA	5 cut(s)	202, 214, 461, 469, 698
AjnI	CCWGG	2 cut(s)	429, 810
AluBI	AGCT	4 cut(s)	263, 272, 797, 986
AluI	AGCT	4 cut(s)	263, 272, 797, 986
Alw26I	GTCTC	2 cut(s)	269, 313
AlwI	GGATC	3 cut(s)	690, 851, 864
AoxI	GGCC	3 cut(s)	186, 338, 370
ApeKI	GCWGC	6 cut(s)	64, 710, 815, 842, 968, 986
ApoI	RAATTY	2 cut(s)	285, 877
AspA2I	CCTAGG	1 cut(s)	541
AsuHPI	GGTGA	2 cut(s)	97, 505
AvrII	CCTAGG	1 cut(s)	541
BamHI	GGATCC	1 cut(s)	856
BauI	CACGAG	1 cut(s)	264
BbrPI	CACGTG	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	660
BbvI	GCAGC	6 cut(s)	76, 697, 827, 829, 955, 973
BccI	CCATC	1 cut(s)	433
BciT130I	CCWGG	2 cut(s)	431, 812
BcoDI	GTCTC	2 cut(s)	269, 313
BfaI	CTAG	4 cut(s)	342, 542, 611, 972
BfmI	CTRYAG	1 cut(s)	732
BfuAI	ACCTGC	1 cut(s)	725
BisI	GCNGC	6 cut(s)	65, 711, 816, 843, 969, 987
BlnI	CCTAGG	1 cut(s)	541
BlsI	GCNGC	6 cut(s)	66, 712, 817, 844, 970, 988
Bme1390I	CCNGG	2 cut(s)	431, 812
BmiI	GGNNCC	1 cut(s)	858
BmrFI	CCNGG	2 cut(s)	431, 812
BmsI	GCATC	3 cut(s)	127, 149, 874
BpiI	GAAGAC	1 cut(s)	660
BpmI	CTGGAG	1 cut(s)	725
BsaAI	YACGTR	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	999
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	3 cut(s)	541, 810, 922
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 216, 958
Bse1I	ACTGG	4 cut(s)	176, 323, 708, 837
Bse3DI	GCAATG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	999
BseBI	CCWGG	2 cut(s)	431, 812
BseDI	CCNNGG	3 cut(s)	541, 810, 922
BseGI	GGATG	4 cut(s)	140, 771, 781, 917
BseJI	GATNNNNATC	1 cut(s)	999
BseLI	CCNNNNNNNGG	3 cut(s)	150, 216, 958
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	3 cut(s)	30, 264, 960
BseNI	ACTGG	4 cut(s)	176, 323, 708, 837
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	6 cut(s)	76, 697, 827, 829, 955, 973
BshFI	GGCC	3 cut(s)	188, 340, 372
BsiSI	CCGG	2 cut(s)	110, 236
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	150, 216, 958
BsmAI	GTCTC	2 cut(s)	269, 313
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	3 cut(s)	188, 340, 372
Bso31I	GGTCTC	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	293, 682, 856, 1000
Bsp19I	CCATGG	1 cut(s)	922
BspACI	CCGC	4 cut(s)	8, 650, 720, 962
BspANI	GGCC	3 cut(s)	188, 340, 372
BspCNI	CTCAG	3 cut(s)	31, 265, 959
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	858
BspMAI	CTGCAG	1 cut(s)	736
BspMI	ACCTGC	1 cut(s)	725
BspPI	GGATC	3 cut(s)	690, 851, 864
BspQI	GCTCTTC	1 cut(s)	54
BspTNI	GGTCTC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	4 cut(s)	176, 323, 708, 837
BssECI	CCNNGG	3 cut(s)	541, 810, 922
BssMI	GATC	4 cut(s)	293, 682, 856, 1000
BssSI	CACGAG	1 cut(s)	264
BssT1I	CCWWGG	2 cut(s)	541, 922
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	2 cut(s)	431, 812
Bst4CI	ACNGT	2 cut(s)	106, 911
Bst6I	CTCTTC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstBAI	YACGTR	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	39, 273, 946
BstDSI	CCRYGG	1 cut(s)	922
BstF5I	GGATG	4 cut(s)	140, 771, 781, 917
BstKTI	GATC	4 cut(s)	296, 685, 859, 1003
BstMAI	GTCTC	2 cut(s)	269, 313
BstMBI	GATC	4 cut(s)	293, 682, 856, 1000
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 269, 968
BstNI	CCWGG	2 cut(s)	431, 812
BstSCI	CCNGG	2 cut(s)	429, 810
BstSFI	CTRYAG	1 cut(s)	732
BstV1I	GCAGC	6 cut(s)	76, 697, 827, 829, 955, 973
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	2 cut(s)	682, 856
BstYI	RGATCY	2 cut(s)	682, 856
BsuRI	GGCC	3 cut(s)	188, 340, 372
BtgI	CCRYGG	1 cut(s)	922
BtsCI	GGATG	4 cut(s)	140, 771, 781, 917
BtsIMutI	CAGTG	3 cut(s)	111, 492, 844
BveI	ACCTGC	1 cut(s)	725
Cac8I	GCNNGC	1 cut(s)	69
CciI	TCATGA	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	754, 975
CviAII	CATG	4 cut(s)	314, 334, 512, 923
CviQI	GTAC	2 cut(s)	754, 975
DdeI	CTNAG	3 cut(s)	39, 273, 946
DpnI	GATC	4 cut(s)	295, 684, 858, 1002
DpnII	GATC	4 cut(s)	293, 682, 856, 1000
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
EciI	GGCGGA	1 cut(s)	735
Eco130I	CCWWGG	2 cut(s)	541, 922
Eco147I	AGGCCT	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	313
Eco72I	CACGTG	1 cut(s)	500
EcoRII	CCWGG	2 cut(s)	429, 810
EcoT14I	CCWWGG	2 cut(s)	541, 922
EcoT22I	ATGCAT	1 cut(s)	142
ErhI	CCWWGG	2 cut(s)	541, 922
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	4 cut(s)	317, 337, 515, 926
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	4 cut(s)	313, 333, 511, 922
Fnu4HI	GCNGC	6 cut(s)	65, 711, 816, 843, 969, 987
FokI	GGATG	4 cut(s)	127, 778, 788, 904
Fsp4HI	GCNGC	6 cut(s)	65, 711, 816, 843, 969, 987
FspBI	CTAG	4 cut(s)	342, 542, 611, 972
GluI	GCNGC	6 cut(s)	65, 711, 816, 843, 969, 987
GsuI	CTGGAG	1 cut(s)	725
HaeIII	GGCC	3 cut(s)	188, 340, 372
HapII	CCGG	2 cut(s)	110, 236
Hin1II	CATG	4 cut(s)	317, 337, 515, 926
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HinfI	GANTC	2 cut(s)	244, 872
HpaII	CCGG	2 cut(s)	110, 236
HphI	GGTGA	2 cut(s)	97, 505
Hpy166II	GTNNAC	2 cut(s)	123, 363
Hpy188I	TCNGA	7 cut(s)	40, 136, 226, 834, 883, 892, 949
Hpy188III	TCNNGA	5 cut(s)	181, 266, 334, 533, 611
Hpy8I	GTNNAC	2 cut(s)	123, 363
HpyAV	CCTTC	2 cut(s)	178, 484
HpyCH4III	ACNGT	2 cut(s)	106, 911
HpyCH4IV	ACGT	3 cut(s)	258, 499, 593
HpyCH4V	TGCA	7 cut(s)	140, 149, 520, 551, 713, 734, 792
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 269, 968
HpyF3I	CTNAG	3 cut(s)	39, 273, 946
HpySE526I	ACGT	3 cut(s)	258, 499, 593
Hsp92II	CATG	4 cut(s)	317, 337, 515, 926
Kzo9I	GATC	4 cut(s)	293, 682, 856, 1000
LguI	GCTCTTC	1 cut(s)	54
Lsp1109I	GCAGC	6 cut(s)	76, 697, 827, 829, 955, 973
LweI	GCATC	3 cut(s)	127, 149, 874
MaeI	CTAG	4 cut(s)	342, 542, 611, 972
MaeII	ACGT	3 cut(s)	258, 499, 593
MaeIII	GTNAC	2 cut(s)	474, 493
MalI	GATC	4 cut(s)	295, 684, 858, 1002
MboI	GATC	4 cut(s)	293, 682, 856, 1000
MboII	GAAGA	6 cut(s)	15, 28, 71, 410, 665, 682
MflI	RGATCY	2 cut(s)	682, 856
MluCI	AATT	5 cut(s)	285, 298, 469, 877, 939
MlyI	GAGTC	1 cut(s)	866
Mph1103I	ATGCAT	1 cut(s)	142
MseI	TTAA	3 cut(s)	50, 158, 413
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	797
MspI	CCGG	2 cut(s)	110, 236
MspR9I	CCNGG	2 cut(s)	431, 812
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	2 cut(s)	431, 812
MwoI	GCNNNNNNNGC	3 cut(s)	146, 269, 968
NcoI	CCATGG	1 cut(s)	922
NdeII	GATC	4 cut(s)	293, 682, 856, 1000
NlaIII	CATG	4 cut(s)	317, 337, 515, 926
NlaIV	GGNNCC	1 cut(s)	858
NmeAIII	GCCGAG	1 cut(s)	784
NmuCI	GTSAC	2 cut(s)	474, 493
NsiI	ATGCAT	1 cut(s)	142
PagI	TCATGA	1 cut(s)	333
PceI	AGGCCT	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	54
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	958
PkrI	GCNGC	6 cut(s)	66, 712, 817, 844, 970, 988
PleI	GAGTC	1 cut(s)	866
PmaCI	CACGTG	1 cut(s)	500
PmlI	CACGTG	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	866
Ppu21I	YACGTR	1 cut(s)	500
Psp6I	CCWGG	2 cut(s)	429, 810
PspCI	CACGTG	1 cut(s)	500
PspGI	CCWGG	2 cut(s)	429, 810
PspN4I	GGNNCC	1 cut(s)	858
PstI	CTGCAG	1 cut(s)	736
PsuI	RGATCY	2 cut(s)	682, 856
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	2 cut(s)	755, 976
RsaNI	GTAC	2 cut(s)	754, 975
RseI	CAYNNNNRTG	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	50, 158, 413
SatI	GCNGC	6 cut(s)	65, 711, 816, 843, 969, 987
Sau3AI	GATC	4 cut(s)	293, 682, 856, 1000
SchI	GAGTC	1 cut(s)	866
ScrFI	CCNGG	2 cut(s)	431, 812
SfaNI	GCATC	3 cut(s)	127, 149, 874
SfcI	CTRYAG	1 cut(s)	732
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	5 cut(s)	285, 298, 469, 877, 939
SseBI	AGGCCT	1 cut(s)	340
SsiI	CCGC	4 cut(s)	8, 650, 720, 962
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	4 cut(s)	342, 542, 611, 972
StuI	AGGCCT	1 cut(s)	340
StyD4I	CCNGG	2 cut(s)	429, 810
StyI	CCWWGG	2 cut(s)	541, 922
TaaI	ACNGT	2 cut(s)	106, 911
TaiI	ACGT	3 cut(s)	261, 502, 596
TasI	AATT	5 cut(s)	285, 298, 469, 877, 939
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	3 cut(s)	50, 158, 413
Tru9I	TTAA	3 cut(s)	50, 158, 413
TscAI	CASTG	3 cut(s)	111, 492, 844
TseFI	GTSAC	2 cut(s)	474, 493
TseI	GCWGC	6 cut(s)	64, 710, 815, 842, 968, 986
Tsp45I	GTSAC	2 cut(s)	474, 493
TspDTI	ATGAA	2 cut(s)	29, 782
TspRI	CASTG	3 cut(s)	111, 492, 844
Van91I	CCANNNNNTGG	1 cut(s)	958
XapI	RAATTY	2 cut(s)	285, 877
XbaI	TCTAGA	1 cut(s)	610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
XmaJI	CCTAGG	1 cut(s)	541
XspI	CTAG	4 cut(s)	342, 542, 611, 972
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.