Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006516

Physical Location & Seq

Genomic Coordinates Reverse (-)

42208818 .. 42213847

Gene Structure 5030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G512800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAGTACGGGAATAAAGAAATCCCCTTCAAATGGCTCTGAGAAGATTTTATCATTTGAAGAGCAGCAGGCAAAGATTAACGAAGTGAAGAGGTTGATAGGAACATTGCCTGATAAGTTGTCCATTTATTGTTCTGATGGATCCATCTCAAGGCATCTAAGGGCAAGAAACTGGAATGTCAAGAAAGCTACGAAAATGTTAAAAGATACCTTGAAATGGAGGGCAGAGTACAAACCGGAGGAGATTCGTTGGGAAGAGGTAGCTCGTGAAGCAGAAACAGGGAAAATTTACAGATCAAATTATTTTGACAAGCATGGGAGACCAGTTCTTGTCATGAGACCTAGTTGTCAGAACTCAAAGTCGACAAAAGGACAGATTAGATACTTGGTATACTGCATGGAGAATGCTATTTTAAATCTACCTCCAGATCAGGAACAAATGGTTTGGATGATAGATTTTCAGGGTTTCAATTTGTCACATATTTCAGTGAAGTTGACACGGGAAACTGCCCATGTTTTACAAGACCATTATCCAGAACGCCTAGGTCTTGCAATACTGTACAATCCACCAAAGTTTTTTGAACCATTCTTTACGATGGTAAAGCCTTTTCTAGAGCCAAAGACTTACAACAAAGTCAAGTTTGTTTACTCGGATGATGTCAACGCCAAGAAGATAATGGAGGATCTATTTGATATTGATAAACTGGAGGCTGCATTTGGGGGAAATGATACATCGGGTTTTGATATAAATAAATATGCTGAGAGGATGAAAGAGGATGACAAGAAGATGCCTGCAATTTGGACAAGAGGAAATCCTGCTTTGGCAGCCTCAGAACCTGCCCCTACCAGTGCTGCTCTTACATTGGATTCTATCAAGTTAGACTCAGATTCTGATGCATCTGATAATGAAAAAACAGACAGTTCCTCGTCCCATGGGATAGAACCAGAAGTTGTCTCAGACCATGACGAACTGATGGCTGCCGGTAGCAGAAACGCTACCGAAGATGTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

338

Amino Acids

38.32

Weight (kDa)

5.98

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08690 AT4G08690 AT4G08690
fragaria_vesca	FvH4_5g37870 FvH4_5g37870 FvH4_5g37870
malus_domestica	MD08G1179500.v1.1 MD15G1364800.v1.1
prunus_persica	Prupe.1G512800_v2.0.a1
pyrus_communis	pycom08g15370 pycom15g32720
rosa_chinensis	RchiOBHm_Chr7g0239851
rosa_laevigata	RLG00000000725
rosa_multiflora	Rmu_co8357749.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220760
rosa_rugosa	Rorug07G0330100 Rorug07G0330200 Rorug07G0330300 Rorug07G0330400 Rorug07G0330500 Rorug07G0330500
rosa_samantha	Rh7AG484000 Rh7BG457100 Rh7CG501500 Rh7DG469700
rosa_wichuraiana	Rw7G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	345
Acc36I	ACCTGC	1 cut(s)	844
AccI	GTMKAC	2 cut(s)	362, 390
AclWI	GGATC	3 cut(s)	135, 148, 690
AcsI	RAATTY	1 cut(s)	285
AfaI	GTAC	4 cut(s)	7, 230, 560, 1008
AfiI	CCNNNNNNNGG	3 cut(s)	32, 150, 216
AgsI	TTSAA	5 cut(s)	30, 59, 214, 469, 581
AluBI	AGCT	2 cut(s)	188, 263
AluI	AGCT	2 cut(s)	188, 263
Alw26I	GTCTC	3 cut(s)	313, 331, 958
AlwI	GGATC	3 cut(s)	135, 148, 690
AlwNI	CAGNNNCTG	2 cut(s)	836, 890
ApeKI	GCWGC	5 cut(s)	64, 710, 824, 851, 977
ApoI	RAATTY	1 cut(s)	285
AspA2I	CCTAGG	1 cut(s)	541
AvrII	CCTAGG	1 cut(s)	541
BamHI	GGATCC	1 cut(s)	140
BauI	CACGAG	1 cut(s)	264
BbvI	GCAGC	5 cut(s)	76, 697, 836, 838, 964
BccI	CCATC	4 cut(s)	131, 152, 589, 967
BcoDI	GTCTC	3 cut(s)	313, 331, 958
BfaI	CTAG	3 cut(s)	342, 542, 611
BfuAI	ACCTGC	1 cut(s)	844
BisI	GCNGC	5 cut(s)	65, 711, 825, 852, 978
BlnI	CCTAGG	1 cut(s)	541
BlsI	GCNGC	5 cut(s)	66, 712, 826, 853, 979
BmiI	GGNNCC	1 cut(s)	142
BmsI	GCATC	4 cut(s)	163, 777, 883, 905
BpmI	CTGGAG	2 cut(s)	408, 725
BpuEI	CTTGAG	1 cut(s)	133
BsaI	GGTCTC	2 cut(s)	313, 331
BsaJI	CCNNGG	2 cut(s)	541, 931
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 150, 216
Bse118I	RCCGGY	1 cut(s)	980
Bse1I	ACTGG	4 cut(s)	176, 323, 708, 846
Bse3DI	GCAATG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	541, 931
BseGI	GGATG	4 cut(s)	453, 658, 771, 781
BseLI	CCNNNNNNNGG	3 cut(s)	32, 150, 216
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	5 cut(s)	30, 750, 843, 897, 969
BseNI	ACTGG	4 cut(s)	176, 323, 708, 846
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	5 cut(s)	76, 697, 836, 838, 964
BsiSI	CCGG	2 cut(s)	236, 981
BslFI	GGGAC	1 cut(s)	913
BslI	CCNNNNNNNGG	3 cut(s)	32, 150, 216
BsmAI	GTCTC	3 cut(s)	313, 331, 958
BsmFI	GGGAC	1 cut(s)	913
BsmI	GAATGC	1 cut(s)	409
Bso31I	GGTCTC	2 cut(s)	313, 331
Bsp1407I	TGTACA	2 cut(s)	558, 1006
Bsp143I	GATC	4 cut(s)	140, 293, 427, 682
Bsp19I	CCATGG	1 cut(s)	931
BspCNI	CTCAG	5 cut(s)	31, 751, 842, 896, 968
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	142
BspMI	ACCTGC	1 cut(s)	844
BspPI	GGATC	3 cut(s)	135, 148, 690
BspQI	GCTCTTC	1 cut(s)	54
BspTNI	GGTCTC	2 cut(s)	313, 331
BsrDI	GCAATG	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	980
BsrGI	TGTACA	2 cut(s)	558, 1006
BsrI	ACTGG	4 cut(s)	176, 323, 708, 846
BssAI	RCCGGY	1 cut(s)	980
BssECI	CCNNGG	2 cut(s)	541, 931
BssMI	GATC	4 cut(s)	140, 293, 427, 682
BssNAI	GTATAC	1 cut(s)	391
BssSI	CACGAG	1 cut(s)	264
BssT1I	CCWWGG	2 cut(s)	541, 931
Bst1107I	GTATAC	1 cut(s)	391
Bst2BI	CACGAG	1 cut(s)	264
Bst4CI	ACNGT	2 cut(s)	558, 920
Bst6I	CTCTTC	3 cut(s)	54, 83, 249
BstAUI	TGTACA	2 cut(s)	558, 1006
BstC8I	GCNNGC	2 cut(s)	69, 792
BstDEI	CTNAG	6 cut(s)	39, 158, 759, 829, 883, 955
BstDSI	CCRYGG	1 cut(s)	931
BstF5I	GGATG	4 cut(s)	453, 658, 771, 781
BstKTI	GATC	4 cut(s)	143, 296, 430, 685
BstMAI	GTCTC	3 cut(s)	313, 331, 958
BstMBI	GATC	4 cut(s)	140, 293, 427, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 824
BstV1I	GCAGC	5 cut(s)	76, 697, 836, 838, 964
BstX2I	RGATCY	2 cut(s)	140, 682
BstYI	RGATCY	2 cut(s)	140, 682
BstZ17I	GTATAC	1 cut(s)	391
BtgI	CCRYGG	1 cut(s)	931
BtsCI	GGATG	4 cut(s)	453, 658, 771, 781
BtsIMutI	CAGTG	2 cut(s)	492, 853
BveI	ACCTGC	1 cut(s)	844
Cac8I	GCNNGC	2 cut(s)	69, 792
CaiI	CAGNNNCTG	2 cut(s)	836, 890
CciI	TCATGA	1 cut(s)	333
Cfr10I	RCCGGY	1 cut(s)	980
Csp6I	GTAC	4 cut(s)	6, 229, 559, 1007
CviAII	CATG	6 cut(s)	314, 334, 397, 512, 932, 962
CviJI	RGCY	8 cut(s)	36, 188, 263, 604, 616, 710, 827, 977
CviKI_1	RGCY	8 cut(s)	36, 188, 263, 604, 616, 710, 827, 977
CviQI	GTAC	4 cut(s)	6, 229, 559, 1007
DdeI	CTNAG	6 cut(s)	39, 158, 759, 829, 883, 955
DpnI	GATC	4 cut(s)	142, 295, 429, 684
DpnII	GATC	4 cut(s)	140, 293, 427, 682
DraI	TTTAAA	1 cut(s)	414
DrdI	GACNNNNNNGTC	1 cut(s)	345
DseDI	GACNNNNNNGTC	1 cut(s)	345
Eam1104I	CTCTTC	3 cut(s)	54, 83, 249
EarI	CTCTTC	3 cut(s)	54, 83, 249
Eco130I	CCWWGG	2 cut(s)	541, 931
Eco31I	GGTCTC	2 cut(s)	313, 331
EcoT14I	CCWWGG	2 cut(s)	541, 931
EcoT22I	ATGCAT	1 cut(s)	898
ErhI	CCWWGG	2 cut(s)	541, 931
FaeI	CATG	6 cut(s)	317, 337, 400, 515, 935, 965
FaqI	GGGAC	1 cut(s)	913
FatI	CATG	6 cut(s)	313, 333, 396, 511, 931, 961
FblI	GTMKAC	2 cut(s)	362, 390
Fnu4HI	GCNGC	5 cut(s)	65, 711, 825, 852, 978
FokI	GGATG	4 cut(s)	460, 665, 778, 788
Fsp4HI	GCNGC	5 cut(s)	65, 711, 825, 852, 978
FspBI	CTAG	3 cut(s)	342, 542, 611
GluI	GCNGC	5 cut(s)	65, 711, 825, 852, 978
GsuI	CTGGAG	2 cut(s)	408, 725
HapII	CCGG	2 cut(s)	236, 981
Hin1II	CATG	6 cut(s)	317, 337, 400, 515, 935, 965
HincII	GTYRAC	3 cut(s)	363, 495, 661
HindII	GTYRAC	3 cut(s)	363, 495, 661
HinfI	GANTC	4 cut(s)	244, 866, 881, 887
HpaII	CCGG	2 cut(s)	236, 981
Hpy166II	GTNNAC	5 cut(s)	363, 391, 495, 646, 661
Hpy188I	TCNGA	9 cut(s)	40, 136, 351, 652, 832, 886, 892, 901, 958
Hpy188III	TCNNGA	7 cut(s)	181, 266, 334, 425, 431, 533, 611
Hpy8I	GTNNAC	5 cut(s)	363, 391, 495, 646, 661
HpyAV	CCTTC	1 cut(s)	36
HpyCH4III	ACNGT	2 cut(s)	558, 920
HpyCH4V	TGCA	5 cut(s)	396, 551, 713, 794, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 824
HpyF3I	CTNAG	6 cut(s)	39, 158, 759, 829, 883, 955
Hsp92II	CATG	6 cut(s)	317, 337, 400, 515, 935, 965
Kzo9I	GATC	4 cut(s)	140, 293, 427, 682
LguI	GCTCTTC	1 cut(s)	54
Lsp1109I	GCAGC	5 cut(s)	76, 697, 836, 838, 964
LweI	GCATC	4 cut(s)	163, 777, 883, 905
MaeI	CTAG	3 cut(s)	342, 542, 611
MaeIII	GTNAC	1 cut(s)	474
MalI	GATC	4 cut(s)	142, 295, 429, 684
MboI	GATC	4 cut(s)	140, 293, 427, 682
MboII	GAAGA	7 cut(s)	55, 71, 100, 266, 682, 796, 1013
MflI	RGATCY	2 cut(s)	140, 682
MluCI	AATT	4 cut(s)	285, 298, 469, 795
MlyI	GAGTC	1 cut(s)	875
Mph1103I	ATGCAT	1 cut(s)	898
MseI	TTAA	3 cut(s)	78, 200, 413
MspI	CCGG	2 cut(s)	236, 981
Mva1269I	GAATGC	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	269, 824
NcoI	CCATGG	1 cut(s)	931
NdeII	GATC	4 cut(s)	140, 293, 427, 682
NlaIII	CATG	6 cut(s)	317, 337, 400, 515, 935, 965
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	474
NsiI	ATGCAT	1 cut(s)	898
PagI	TCATGA	1 cut(s)	333
PciSI	GCTCTTC	1 cut(s)	54
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	244, 866, 887
PkrI	GCNGC	5 cut(s)	66, 712, 826, 853, 979
PleI	GAGTC	1 cut(s)	875
PpsI	GAGTC	1 cut(s)	875
PspN4I	GGNNCC	1 cut(s)	142
PstNI	CAGNNNCTG	2 cut(s)	836, 890
PsuI	RGATCY	2 cut(s)	140, 682
RsaI	GTAC	4 cut(s)	7, 230, 560, 1008
RsaNI	GTAC	4 cut(s)	6, 229, 559, 1007
SalI	GTCGAC	1 cut(s)	361
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	78, 200, 413
SatI	GCNGC	5 cut(s)	65, 711, 825, 852, 978
Sau3AI	GATC	4 cut(s)	140, 293, 427, 682
SchI	GAGTC	1 cut(s)	875
SetI	ASST	9 cut(s)	95, 190, 212, 261, 265, 343, 424, 547, 838
SfaNI	GCATC	4 cut(s)	163, 777, 883, 905
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	4 cut(s)	285, 298, 469, 795
SspMI	CTAG	3 cut(s)	342, 542, 611
StyI	CCWWGG	2 cut(s)	541, 931
TaaI	ACNGT	2 cut(s)	558, 920
TaqI	TCGA	1 cut(s)	362
TasI	AATT	4 cut(s)	285, 298, 469, 795
TatI	WGTACW	3 cut(s)	228, 558, 1006
TfiI	GAWTC	3 cut(s)	244, 866, 887
Tru1I	TTAA	3 cut(s)	78, 200, 413
Tru9I	TTAA	3 cut(s)	78, 200, 413
TscAI	CASTG	2 cut(s)	492, 853
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	5 cut(s)	64, 710, 824, 851, 977
Tsp45I	GTSAC	1 cut(s)	474
TspDTI	ATGAA	2 cut(s)	782, 921
TspRI	CASTG	2 cut(s)	492, 853
XapI	RAATTY	1 cut(s)	285
XbaI	TCTAGA	1 cut(s)	610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
XmaJI	CCTAGG	1 cut(s)	541
XmiI	GTMKAC	2 cut(s)	362, 390
XspI	CTAG	3 cut(s)	342, 542, 611
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.