Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006516

Physical Location & Seq

Genomic Coordinates Reverse (-)

4481478 .. 4484083

Gene Structure 2606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000725

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAAGAAATCTCCTTCAAATGGCTCTGAGAATATTTTAACAAGTGAAGAACAGCAGGCAAAGATTAGCGAGGTGAGGAAGTTGATAGGGACAGTGCCGGATAGGTTGTCCACATATTGTTCTGATGCATCCATTGCTAGGCATTTAAGGGCAAGAAACTGGAATGTCAAGAAGGCCACAAAAATGCTGAAAGATACCTTGAAATGGAGGTCAGAATACAAACCGGGGGAGATTCGTTGGGAGGATGTAGCTCGTGAAGCTGAGACGGGAAAAATTTACAGATCGAATTATATGGACAAGCATGGGAGACCAGTTCTTGTCATGAGGCCTAGTTGCCAGAACTCAAAGTCAACGAAAGGCCAGATACGATATTTGGTGTATTGCTTGGAGAATGCTATATTACATCTTCCACCCGACCAGGAACAGATGGTTTGGCTGATTGATTTTCAAGGTTTCAATTTGTCACATATTTCAGTGAAGGTGACACGTGAAACGGCCCATGTTTTGCAAGACCAGTATCCAGAACGCCTAGGTCTTGCAATACTCTACAACCCACCGAAGTTTTTTGAGCCATTCTATACATTAGTAAAGCCCTTTCTAGAGCCAAAGACTTACAATAAAGTGAAGTTTGTGTATGCGGAAGACCTCAACACCAAGAAGATAATGGAGGATCTATTTGATATTGAAAAACTGGAGGCTGCATTTGGCGGAAATGATACTGCAGGTTTTGATATAAACAAGTATGCCGAGAGGATGAAAGAGGATGATAAGAAGAGGTCTACGATTTGCACAACTGGAAGTCTGCCCTTGGCAGTCTCACAACCTGTCCTGACCAATGCTGCTCTCTCATTGGATCCTGTCAAGTTAGACTCAAATTCAGATGCTTCTGATAACGAGAAAACAGGCAGTTCCTCATCTCATGGCATAGAACCAGAAATTATCTCAGACAACGATGTGGCGGTGGCTGCTAGTACCACAAAAGCTGCCGATGATGTAGATAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

336

Amino Acids

37.8

Weight (kDa)

6.63

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	41 - 65	8.2e-06	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	88 - 237	1.5e-35	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	102 - 211	3.3e-09	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08690 AT4G08690 AT4G08690
fragaria_vesca	FvH4_5g37870 FvH4_5g37870 FvH4_5g37870
malus_domestica	MD08G1179500.v1.1 MD15G1364800.v1.1
prunus_persica	Prupe.1G512800_v2.0.a1
pyrus_communis	pycom08g15370 pycom15g32720
rosa_chinensis	RchiOBHm_Chr7g0239851
rosa_laevigata	RLG00000000725
rosa_multiflora	Rmu_co8357749.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220760
rosa_rugosa	Rorug07G0330100 Rorug07G0330200 Rorug07G0330300 Rorug07G0330400 Rorug07G0330500 Rorug07G0330500
rosa_samantha	Rh7AG484000 Rh7BG457100 Rh7CG501500 Rh7DG469700
rosa_wichuraiana	Rw7G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	713
AccI	GTMKAC	1 cut(s)	779
AciI	CCGC	3 cut(s)	638, 708, 959
AclWI	GGATC	3 cut(s)	678, 848, 861
AcsI	RAATTY	2 cut(s)	273, 874
AcvI	CACGTG	1 cut(s)	488
AfaI	GTAC	1 cut(s)	973
AfiI	CCNNNNNNNGG	3 cut(s)	20, 138, 204
AflIII	ACRYGT	1 cut(s)	485
AgsI	TTSAA	5 cut(s)	18, 202, 449, 457, 686
AjnI	CCWGG	1 cut(s)	417
AluBI	AGCT	3 cut(s)	251, 260, 983
AluI	AGCT	3 cut(s)	251, 260, 983
Alw26I	GTCTC	3 cut(s)	257, 301, 820
AlwI	GGATC	3 cut(s)	678, 848, 861
AoxI	GGCC	4 cut(s)	174, 326, 358, 495
ApeKI	GCWGC	4 cut(s)	698, 839, 965, 983
ApoI	RAATTY	2 cut(s)	273, 874
AspA2I	CCTAGG	1 cut(s)	529
AspS9I	GGNCC	1 cut(s)	496
AsuC2I	CCSGG	1 cut(s)	225
AsuHPI	GGTGA	2 cut(s)	85, 493
AvrII	CCTAGG	1 cut(s)	529
BamHI	GGATCC	1 cut(s)	853
BauI	CACGAG	1 cut(s)	252
BbrPI	CACGTG	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	648
BbvI	GCAGC	4 cut(s)	685, 826, 952, 970
BccI	CCATC	1 cut(s)	421
BceAI	ACGGC	1 cut(s)	510
BciT130I	CCWGG	1 cut(s)	419
BciVI	GTATCC	1 cut(s)	528
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	3 cut(s)	257, 301, 820
BfaI	CTAG	5 cut(s)	138, 330, 530, 599, 969
BfmI	CTRYAG	1 cut(s)	720
BfuAI	ACCTGC	1 cut(s)	713
BfuI	GTATCC	1 cut(s)	528
BisI	GCNGC	4 cut(s)	699, 840, 966, 984
BlnI	CCTAGG	1 cut(s)	529
BlsI	GCNGC	4 cut(s)	700, 841, 967, 985
Bme1390I	CCNGG	2 cut(s)	225, 419
BmgT120I	GGNCC	1 cut(s)	496
BmiI	GGNNCC	1 cut(s)	855
BmrFI	CCNGG	2 cut(s)	225, 419
BmsI	GCATC	3 cut(s)	115, 137, 871
BpiI	GAAGAC	1 cut(s)	648
BpmI	CTGGAG	1 cut(s)	713
BpuMI	CCSGG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	488
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	3 cut(s)	224, 529, 807
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 138, 204
Bse1I	ACTGG	5 cut(s)	164, 311, 514, 696, 799
Bse3DI	GCAATG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	419
BseDI	CCNNGG	3 cut(s)	224, 529, 807
BseGI	GGATG	4 cut(s)	128, 250, 759, 769
BseLI	CCNNNNNNNGG	3 cut(s)	20, 138, 204
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	3 cut(s)	18, 252, 957
BseNI	ACTGG	5 cut(s)	164, 311, 514, 696, 799
BseXI	GCAGC	4 cut(s)	685, 826, 952, 970
BshFI	GGCC	4 cut(s)	176, 328, 360, 497
BsiSI	CCGG	2 cut(s)	98, 224
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	3 cut(s)	20, 138, 204
BsmAI	GTCTC	3 cut(s)	257, 301, 820
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	4 cut(s)	176, 328, 360, 497
Bso31I	GGTCTC	1 cut(s)	301
Bsp143I	GATC	3 cut(s)	281, 670, 853
BspACI	CCGC	3 cut(s)	638, 708, 959
BspANI	GGCC	4 cut(s)	176, 328, 360, 497
BspCNI	CTCAG	3 cut(s)	19, 253, 956
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	855
BspMAI	CTGCAG	1 cut(s)	724
BspMI	ACCTGC	1 cut(s)	713
BspPI	GGATC	3 cut(s)	678, 848, 861
BspTNI	GGTCTC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	5 cut(s)	164, 311, 514, 696, 799
BssECI	CCNNGG	3 cut(s)	224, 529, 807
BssMI	GATC	3 cut(s)	281, 670, 853
BssSI	CACGAG	1 cut(s)	252
BssT1I	CCWWGG	2 cut(s)	529, 807
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	767
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstBAI	YACGTR	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	27, 261, 943
BstF5I	GGATG	4 cut(s)	128, 250, 759, 769
BstKTI	GATC	3 cut(s)	284, 673, 856
BstMAI	GTCTC	3 cut(s)	257, 301, 820
BstMBI	GATC	3 cut(s)	281, 670, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 257, 965
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	2 cut(s)	223, 417
BstSFI	CTRYAG	1 cut(s)	720
BstV1I	GCAGC	4 cut(s)	685, 826, 952, 970
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	2 cut(s)	670, 853
BstYI	RGATCY	2 cut(s)	670, 853
BsuI	GTATCC	1 cut(s)	528
BsuRI	GGCC	4 cut(s)	176, 328, 360, 497
BtsCI	GGATG	4 cut(s)	128, 250, 759, 769
BtsIMutI	CAGTG	2 cut(s)	99, 480
BveI	ACCTGC	1 cut(s)	713
Cac8I	GCNNGC	1 cut(s)	57
CciI	TCATGA	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	496
Csp6I	GTAC	1 cut(s)	972
CviAII	CATG	4 cut(s)	302, 322, 500, 920
CviQI	GTAC	1 cut(s)	972
DdeI	CTNAG	3 cut(s)	27, 261, 943
DpnI	GATC	3 cut(s)	283, 672, 855
DpnII	GATC	3 cut(s)	281, 670, 853
Eam1104I	CTCTTC	1 cut(s)	767
EarI	CTCTTC	1 cut(s)	767
EciI	GGCGGA	1 cut(s)	723
Eco130I	CCWWGG	2 cut(s)	529, 807
Eco147I	AGGCCT	1 cut(s)	328
Eco31I	GGTCTC	1 cut(s)	301
Eco72I	CACGTG	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	417
EcoT14I	CCWWGG	2 cut(s)	529, 807
EcoT22I	ATGCAT	1 cut(s)	130
ErhI	CCWWGG	2 cut(s)	529, 807
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	4 cut(s)	305, 325, 503, 923
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	4 cut(s)	301, 321, 499, 919
FblI	GTMKAC	1 cut(s)	779
Fnu4HI	GCNGC	4 cut(s)	699, 840, 966, 984
FokI	GGATG	4 cut(s)	115, 257, 766, 776
Fsp4HI	GCNGC	4 cut(s)	699, 840, 966, 984
FspBI	CTAG	5 cut(s)	138, 330, 530, 599, 969
GluI	GCNGC	4 cut(s)	699, 840, 966, 984
GsuI	CTGGAG	1 cut(s)	713
HaeIII	GGCC	4 cut(s)	176, 328, 360, 497
HapII	CCGG	2 cut(s)	98, 224
Hin1II	CATG	4 cut(s)	305, 325, 503, 923
HincII	GTYRAC	1 cut(s)	351
HindII	GTYRAC	1 cut(s)	351
HinfI	GANTC	2 cut(s)	232, 869
HpaII	CCGG	2 cut(s)	98, 224
HphI	GGTGA	2 cut(s)	85, 493
Hpy166II	GTNNAC	3 cut(s)	111, 351, 780
Hpy188I	TCNGA	6 cut(s)	28, 124, 214, 880, 889, 946
Hpy188III	TCNNGA	6 cut(s)	169, 254, 322, 521, 599, 829
Hpy8I	GTNNAC	3 cut(s)	111, 351, 780
HpyAV	CCTTC	3 cut(s)	24, 166, 472
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	487
HpyCH4V	TGCA	6 cut(s)	128, 508, 539, 701, 722, 789
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 257, 965
HpyF3I	CTNAG	3 cut(s)	27, 261, 943
HpySE526I	ACGT	1 cut(s)	487
Hsp92II	CATG	4 cut(s)	305, 325, 503, 923
Kzo9I	GATC	3 cut(s)	281, 670, 853
Lsp1109I	GCAGC	4 cut(s)	685, 826, 952, 970
LweI	GCATC	3 cut(s)	115, 137, 871
MaeI	CTAG	5 cut(s)	138, 330, 530, 599, 969
MaeII	ACGT	1 cut(s)	487
MaeIII	GTNAC	2 cut(s)	462, 481
MalI	GATC	3 cut(s)	283, 672, 855
MboI	GATC	3 cut(s)	281, 670, 853
MboII	GAAGA	6 cut(s)	16, 59, 398, 653, 670, 784
MflI	RGATCY	2 cut(s)	670, 853
MluCI	AATT	5 cut(s)	273, 286, 457, 874, 936
MlyI	GAGTC	1 cut(s)	863
Mph1103I	ATGCAT	1 cut(s)	130
MseI	TTAA	2 cut(s)	38, 146
MslI	CAYNNNNRTG	1 cut(s)	182
MspI	CCGG	2 cut(s)	98, 224
MspR9I	CCNGG	2 cut(s)	225, 419
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	419
MwoI	GCNNNNNNNGC	3 cut(s)	134, 257, 965
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	3 cut(s)	281, 670, 853
NlaIII	CATG	4 cut(s)	305, 325, 503, 923
NlaIV	GGNNCC	1 cut(s)	855
NmeAIII	GCCGAG	1 cut(s)	772
NmuCI	GTSAC	2 cut(s)	462, 481
NsiI	ATGCAT	1 cut(s)	130
PagI	TCATGA	1 cut(s)	321
PceI	AGGCCT	1 cut(s)	328
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	700, 841, 967, 985
PleI	GAGTC	1 cut(s)	863
PmaCI	CACGTG	1 cut(s)	488
PmlI	CACGTG	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	863
Ppu21I	YACGTR	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	417
PspCI	CACGTG	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	1 cut(s)	855
PspPI	GGNCC	1 cut(s)	496
PstI	CTGCAG	1 cut(s)	724
PsuI	RGATCY	2 cut(s)	670, 853
RsaI	GTAC	1 cut(s)	973
RsaNI	GTAC	1 cut(s)	972
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	38, 146
SatI	GCNGC	4 cut(s)	699, 840, 966, 984
Sau3AI	GATC	3 cut(s)	281, 670, 853
Sau96I	GGNCC	1 cut(s)	496
SchI	GAGTC	1 cut(s)	863
ScrFI	CCNGG	2 cut(s)	225, 419
SfaNI	GCATC	3 cut(s)	115, 137, 871
SfcI	CTRYAG	1 cut(s)	720
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	5 cut(s)	273, 286, 457, 874, 936
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	3 cut(s)	638, 708, 959
SspI	AATATT	1 cut(s)	34
SspMI	CTAG	5 cut(s)	138, 330, 530, 599, 969
StuI	AGGCCT	1 cut(s)	328
StyD4I	CCNGG	2 cut(s)	223, 417
StyI	CCWWGG	2 cut(s)	529, 807
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	490
TaqI	TCGA	1 cut(s)	284
TasI	AATT	5 cut(s)	273, 286, 457, 874, 936
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	2 cut(s)	38, 146
Tru9I	TTAA	2 cut(s)	38, 146
TscAI	CASTG	2 cut(s)	99, 480
TseFI	GTSAC	2 cut(s)	462, 481
TseI	GCWGC	4 cut(s)	698, 839, 965, 983
Tsp45I	GTSAC	2 cut(s)	462, 481
TspDTI	ATGAA	2 cut(s)	17, 770
TspRI	CASTG	2 cut(s)	99, 480
XapI	RAATTY	2 cut(s)	273, 874
XbaI	TCTAGA	1 cut(s)	598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	661
XmaJI	CCTAGG	1 cut(s)	529
XmiI	GTMKAC	1 cut(s)	779
XspI	CTAG	5 cut(s)	138, 330, 530, 599, 969
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.