Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006516

Physical Location & Seq

Genomic Coordinates Forward (+)

54122638 .. 54127340

Gene Structure 4703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG457100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAGTGCGGGAATGAAGAAATCTCCTTCAAATGGCTCTGAGAATATTTTAACAAGTGAAGAGCAGCAGGCAAAGATTAGCGAGGTGAGGAAGTTGATAGGGACAGTGCCGGATAAGTTGTCCACATATTGTTCCGATGCATCCATTGCAAGGCATTTAAGGGCAAGAAACTGGAATGTCAAGAAGGCCACAAAAATGTTGAAAGATACCTTGAAATGGAGGTCAGAATACAAACCGGAGGAGATTCGTTGGGAGGACGTAGCTCGTGAAGCTGAGACGGGAAAAATTTACAGATCGAATTATATGGACAAGCATGGGAGACCAGTTCTTGTCATGAGGCCTAGTTGCCAGAACTCAAAGTCAACGAAAGGCCAGATACGATATTTGGTGTATTGCTTGGAGAATGCTATATTAAATCTTCAACCCGACCAGGAACAGATGGTTTGGCTGATTGATTTTCAAGGTTTCAATTTGTCACATATTTCAGTGAAGGTGACACGTGAAACAGCCCATGTTTTGCAAGACCATTATCCAGAACGCCTAGGTCTTGCAATACTCTACAACCCACCCAAGTTTTTTGAGCCATTCTATACGTTAGTAAAGCCCTTTCTAGAGCCAAAGACTTACAATAAAGTGAAGTTTGTGTATGCGGAAGACCTCAACACCAAGAAGATAATGGAGGATCTATTTGATATTGAAAAACTGGAGGCTGCATTTGGCGGAAATGATACTGCAGGTTTTGATATAAATAAGTACGCCGAGAGGATGAAAGAGGATGATAAGAAGAGGTCCACGATTTGCACAACTGGAAGTCTGCCCTTGGCAGCCGCACAACCTGTCCTGACCAGTGCTGCTCTCTCATTGGATCCTGTCAAGTTAGACTCAAATTCAGATGCTTCTGATAACGAGAAAACAGACAGTTCCTCATCTCATGGCATAGAACCAGAAATTATCTCAGACCACAATATGGCGGTGGCTGCTAGTACCACAAAAGCTGGCGATGATGTAGATCAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

339

Amino Acids

38.24

Weight (kDa)

6.22

Isoelectric Point (pI)

54.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	45 - 69	7.7e-06	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	92 - 241	6.5e-36	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	106 - 215	3.5e-09	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08690 AT4G08690 AT4G08690
fragaria_vesca	FvH4_5g37870 FvH4_5g37870 FvH4_5g37870
malus_domestica	MD08G1179500.v1.1 MD15G1364800.v1.1
prunus_persica	Prupe.1G512800_v2.0.a1
pyrus_communis	pycom08g15370 pycom15g32720
rosa_chinensis	RchiOBHm_Chr7g0239851
rosa_laevigata	RLG00000000725
rosa_multiflora	Rmu_co8357749.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220760
rosa_rugosa	Rorug07G0330100 Rorug07G0330200 Rorug07G0330300 Rorug07G0330400 Rorug07G0330500 Rorug07G0330500
rosa_samantha	Rh7AG484000 Rh7BG457100 Rh7CG501500 Rh7DG469700
rosa_wichuraiana	Rw7G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	725
AccB7I	CCANNNNNTGG	1 cut(s)	967
AciI	CCGC	5 cut(s)	8, 650, 720, 828, 971
AclWI	GGATC	3 cut(s)	690, 860, 873
AcsI	RAATTY	2 cut(s)	285, 886
AcvI	CACGTG	1 cut(s)	500
AfaI	GTAC	2 cut(s)	755, 985
AfiI	CCNNNNNNNGG	4 cut(s)	32, 150, 216, 967
AflIII	ACRYGT	1 cut(s)	497
AgsI	TTSAA	7 cut(s)	30, 202, 214, 422, 461, 469, 698
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	3 cut(s)	263, 272, 995
AluI	AGCT	3 cut(s)	263, 272, 995
Alw26I	GTCTC	2 cut(s)	269, 313
AlwI	GGATC	3 cut(s)	690, 860, 873
AoxI	GGCC	3 cut(s)	186, 338, 370
ApeKI	GCWGC	5 cut(s)	64, 710, 824, 851, 977
ApoI	RAATTY	2 cut(s)	285, 886
AspA2I	CCTAGG	1 cut(s)	541
AspS9I	GGNCC	1 cut(s)	789
AsuHPI	GGTGA	2 cut(s)	97, 505
AvaII	GGWCC	1 cut(s)	789
AvrII	CCTAGG	1 cut(s)	541
BamHI	GGATCC	1 cut(s)	865
BauI	CACGAG	1 cut(s)	264
BbrPI	CACGTG	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	660
BbvI	GCAGC	5 cut(s)	76, 697, 836, 838, 964
BccI	CCATC	1 cut(s)	433
BciT130I	CCWGG	1 cut(s)	431
BcoDI	GTCTC	2 cut(s)	269, 313
BfaI	CTAG	4 cut(s)	342, 542, 611, 981
BfmI	CTRYAG	1 cut(s)	732
BfuAI	ACCTGC	1 cut(s)	725
BisI	GCNGC	6 cut(s)	65, 711, 825, 828, 852, 978
BlnI	CCTAGG	1 cut(s)	541
BlsI	GCNGC	6 cut(s)	66, 712, 826, 829, 853, 979
Bme1390I	CCNGG	1 cut(s)	431
Bme18I	GGWCC	1 cut(s)	789
BmgT120I	GGNCC	1 cut(s)	789
BmiI	GGNNCC	1 cut(s)	867
BmrFI	CCNGG	1 cut(s)	431
BmsI	GCATC	3 cut(s)	127, 149, 883
BpiI	GAAGAC	1 cut(s)	660
BpmI	CTGGAG	1 cut(s)	725
BsaAI	YACGTR	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	1008
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	2 cut(s)	541, 819
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 150, 216, 967
Bse1I	ACTGG	5 cut(s)	176, 323, 708, 811, 846
Bse3DI	GCAATG	1 cut(s)	144
Bse8I	GATNNNNATC	1 cut(s)	1008
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	2 cut(s)	541, 819
BseGI	GGATG	3 cut(s)	140, 771, 781
BseJI	GATNNNNATC	1 cut(s)	1008
BseLI	CCNNNNNNNGG	4 cut(s)	32, 150, 216, 967
BseMI	GCAATG	1 cut(s)	144
BseMII	CTCAG	3 cut(s)	30, 264, 969
BseNI	ACTGG	5 cut(s)	176, 323, 708, 811, 846
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	5 cut(s)	76, 697, 836, 838, 964
BshFI	GGCC	3 cut(s)	188, 340, 372
BsiSI	CCGG	2 cut(s)	110, 236
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	4 cut(s)	32, 150, 216, 967
BsmAI	GTCTC	2 cut(s)	269, 313
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	3 cut(s)	188, 340, 372
Bso31I	GGTCTC	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	293, 682, 865, 1009
BspACI	CCGC	5 cut(s)	8, 650, 720, 828, 971
BspANI	GGCC	3 cut(s)	188, 340, 372
BspCNI	CTCAG	3 cut(s)	31, 265, 968
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	867
BspMAI	CTGCAG	1 cut(s)	736
BspMI	ACCTGC	1 cut(s)	725
BspPI	GGATC	3 cut(s)	690, 860, 873
BspQI	GCTCTTC	1 cut(s)	54
BspTNI	GGTCTC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	144
BsrI	ACTGG	5 cut(s)	176, 323, 708, 811, 846
BssECI	CCNNGG	2 cut(s)	541, 819
BssMI	GATC	4 cut(s)	293, 682, 865, 1009
BssSI	CACGAG	1 cut(s)	264
BssT1I	CCWWGG	2 cut(s)	541, 819
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	106, 920
Bst6I	CTCTTC	2 cut(s)	54, 779
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstBAI	YACGTR	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	69, 997
BstDEI	CTNAG	3 cut(s)	39, 273, 955
BstF5I	GGATG	3 cut(s)	140, 771, 781
BstKTI	GATC	4 cut(s)	296, 685, 868, 1012
BstMAI	GTCTC	2 cut(s)	269, 313
BstMBI	GATC	4 cut(s)	293, 682, 865, 1009
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 269, 977
BstNI	CCWGG	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	429
BstSFI	CTRYAG	1 cut(s)	732
BstV1I	GCAGC	5 cut(s)	76, 697, 836, 838, 964
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	2 cut(s)	682, 865
BstYI	RGATCY	2 cut(s)	682, 865
BsuRI	GGCC	3 cut(s)	188, 340, 372
BtgZI	GCGATG	1 cut(s)	1014
BtsCI	GGATG	3 cut(s)	140, 771, 781
BtsIMutI	CAGTG	3 cut(s)	111, 492, 853
BveI	ACCTGC	1 cut(s)	725
Cac8I	GCNNGC	2 cut(s)	69, 997
CciI	TCATGA	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	789
Csp6I	GTAC	2 cut(s)	754, 984
CviAII	CATG	4 cut(s)	314, 334, 512, 932
CviQI	GTAC	2 cut(s)	754, 984
DdeI	CTNAG	3 cut(s)	39, 273, 955
DpnI	GATC	4 cut(s)	295, 684, 867, 1011
DpnII	GATC	4 cut(s)	293, 682, 865, 1009
Eam1104I	CTCTTC	2 cut(s)	54, 779
EarI	CTCTTC	2 cut(s)	54, 779
EciI	GGCGGA	1 cut(s)	735
Eco130I	CCWWGG	2 cut(s)	541, 819
Eco147I	AGGCCT	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	789
Eco72I	CACGTG	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	429
EcoT14I	CCWWGG	2 cut(s)	541, 819
EcoT22I	ATGCAT	1 cut(s)	142
ErhI	CCWWGG	2 cut(s)	541, 819
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	4 cut(s)	317, 337, 515, 935
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	4 cut(s)	313, 333, 511, 931
Fnu4HI	GCNGC	6 cut(s)	65, 711, 825, 828, 852, 978
FokI	GGATG	3 cut(s)	127, 778, 788
Fsp4HI	GCNGC	6 cut(s)	65, 711, 825, 828, 852, 978
FspBI	CTAG	4 cut(s)	342, 542, 611, 981
GluI	GCNGC	6 cut(s)	65, 711, 825, 828, 852, 978
GsuI	CTGGAG	1 cut(s)	725
HaeIII	GGCC	3 cut(s)	188, 340, 372
HapII	CCGG	2 cut(s)	110, 236
Hin1II	CATG	4 cut(s)	317, 337, 515, 935
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HinfI	GANTC	2 cut(s)	244, 881
HpaII	CCGG	2 cut(s)	110, 236
HphI	GGTGA	2 cut(s)	97, 505
Hpy166II	GTNNAC	3 cut(s)	123, 363, 792
Hpy188I	TCNGA	6 cut(s)	40, 136, 226, 892, 901, 958
Hpy188III	TCNNGA	6 cut(s)	181, 266, 334, 533, 611, 841
Hpy8I	GTNNAC	3 cut(s)	123, 363, 792
HpyAV	CCTTC	3 cut(s)	36, 178, 484
HpyCH4III	ACNGT	2 cut(s)	106, 920
HpyCH4IV	ACGT	3 cut(s)	258, 499, 593
HpyCH4V	TGCA	7 cut(s)	140, 149, 520, 551, 713, 734, 801
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 269, 977
HpyF3I	CTNAG	3 cut(s)	39, 273, 955
HpySE526I	ACGT	3 cut(s)	258, 499, 593
Hsp92II	CATG	4 cut(s)	317, 337, 515, 935
Kzo9I	GATC	4 cut(s)	293, 682, 865, 1009
LguI	GCTCTTC	1 cut(s)	54
Lsp1109I	GCAGC	5 cut(s)	76, 697, 836, 838, 964
LweI	GCATC	3 cut(s)	127, 149, 883
MaeI	CTAG	4 cut(s)	342, 542, 611, 981
MaeII	ACGT	3 cut(s)	258, 499, 593
MaeIII	GTNAC	2 cut(s)	474, 493
MalI	GATC	4 cut(s)	295, 684, 867, 1011
MboI	GATC	4 cut(s)	293, 682, 865, 1009
MboII	GAAGA	6 cut(s)	28, 71, 410, 665, 682, 796
MflI	RGATCY	2 cut(s)	682, 865
MluCI	AATT	5 cut(s)	285, 298, 469, 886, 948
MlyI	GAGTC	1 cut(s)	875
Mph1103I	ATGCAT	1 cut(s)	142
MseI	TTAA	3 cut(s)	50, 158, 413
MslI	CAYNNNNRTG	1 cut(s)	194
MspI	CCGG	2 cut(s)	110, 236
MspR9I	CCNGG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	3 cut(s)	146, 269, 977
NdeII	GATC	4 cut(s)	293, 682, 865, 1009
NlaIII	CATG	4 cut(s)	317, 337, 515, 935
NlaIV	GGNNCC	1 cut(s)	867
NmeAIII	GCCGAG	1 cut(s)	784
NmuCI	GTSAC	2 cut(s)	474, 493
NsiI	ATGCAT	1 cut(s)	142
PagI	TCATGA	1 cut(s)	333
PceI	AGGCCT	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	54
PctI	GAATGC	1 cut(s)	409
PfeI	GAWTC	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	967
PkrI	GCNGC	6 cut(s)	66, 712, 826, 829, 853, 979
PleI	GAGTC	1 cut(s)	875
PmaCI	CACGTG	1 cut(s)	500
PmlI	CACGTG	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	875
Ppu21I	YACGTR	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	429
PspCI	CACGTG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	867
PspPI	GGNCC	1 cut(s)	789
PstI	CTGCAG	1 cut(s)	736
PsuI	RGATCY	2 cut(s)	682, 865
RsaI	GTAC	2 cut(s)	755, 985
RsaNI	GTAC	2 cut(s)	754, 984
RseI	CAYNNNNRTG	1 cut(s)	194
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	50, 158, 413
SatI	GCNGC	6 cut(s)	65, 711, 825, 828, 852, 978
Sau3AI	GATC	4 cut(s)	293, 682, 865, 1009
Sau96I	GGNCC	1 cut(s)	789
SchI	GAGTC	1 cut(s)	875
ScrFI	CCNGG	1 cut(s)	431
SfaNI	GCATC	3 cut(s)	127, 149, 883
SfcI	CTRYAG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	789
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	5 cut(s)	285, 298, 469, 886, 948
SseBI	AGGCCT	1 cut(s)	340
SsiI	CCGC	5 cut(s)	8, 650, 720, 828, 971
SspI	AATATT	1 cut(s)	46
SspMI	CTAG	4 cut(s)	342, 542, 611, 981
StuI	AGGCCT	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	429
StyI	CCWWGG	2 cut(s)	541, 819
TaaI	ACNGT	2 cut(s)	106, 920
TaiI	ACGT	3 cut(s)	261, 502, 596
TaqI	TCGA	1 cut(s)	296
TasI	AATT	5 cut(s)	285, 298, 469, 886, 948
TauI	GCSGC	1 cut(s)	830
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	3 cut(s)	50, 158, 413
Tru9I	TTAA	3 cut(s)	50, 158, 413
TscAI	CASTG	3 cut(s)	111, 492, 853
TseFI	GTSAC	2 cut(s)	474, 493
TseI	GCWGC	5 cut(s)	64, 710, 824, 851, 977
Tsp45I	GTSAC	2 cut(s)	474, 493
TspDTI	ATGAA	2 cut(s)	29, 782
TspRI	CASTG	3 cut(s)	111, 492, 853
Van91I	CCANNNNNTGG	1 cut(s)	967
VpaK11BI	GGWCC	1 cut(s)	789
XapI	RAATTY	2 cut(s)	285, 886
XbaI	TCTAGA	1 cut(s)	610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
XmaJI	CCTAGG	1 cut(s)	541
XspI	CTAG	4 cut(s)	342, 542, 611, 981
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.