Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006516

Physical Location & Seq

Genomic Coordinates Reverse (-)

15003430 .. 15004936

Gene Structure 1507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAGACCACGTTGTCAGAACTCAAAGTCAACGAAGGGCCAGATTAAATATTTGGTATATTGCATGGAGAATGCTGTTTTAAATCTTCCTCCAGGTCAGGAGCAGATGGTTTGGATGATAGACTTCGAAGGTTTCAATTTGTCAAATATTTCGGTGAAGGTGACACGGGAAACGGCACATGTTTTACAAGACCGTTATCCAGAACACCTAGGACTTGCAATACTGTACAATCCACCCAAGTTTTTTGAACCATTCTTTTCGATGGTAAAGCCTTTTCTAGAGTCAAAGACGTACAACAAAGTGAAGTTTGTTTACTCGGATGACAACAACGCCAAGAAGATAATGGAGGATCTGTTTGATATGGATAAACTGGAGGCTGCATTCGGGGGAAACGATACTTCTGGTTTCGATATAAATAAATATGCGGAAAGGATGAAAGAGGATGACAAGAAGATGTCCACAATTTGGACAAGAGGAAACCCTTCTTTGGCGGCCTCAGAACCTGCTGTTACCAGTGCTGCTCTTTCATTAGATTCTCTCAAGTTAGACTCAGATTCTGATGCTTCTGATGACGAGAAAACAGACATCTCGTCATCCCATGGGATAGAACCGGAAGTCTCAGACAATGATGAGCCGGTGGCTGCTAGTACCGGAAATGCTACCGAAGGTGTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

226

Amino Acids

25.14

Weight (kDa)

4.74

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	3 - 130	2.3e-27	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	15 - 106	5.1e-07	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08690 AT4G08690 AT4G08690
fragaria_vesca	FvH4_5g37870 FvH4_5g37870 FvH4_5g37870
malus_domestica	MD08G1179500.v1.1 MD15G1364800.v1.1
prunus_persica	Prupe.1G512800_v2.0.a1
pyrus_communis	pycom08g15370 pycom15g32720
rosa_chinensis	RchiOBHm_Chr7g0239851
rosa_laevigata	RLG00000000725
rosa_multiflora	Rmu_co8357749.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220760
rosa_rugosa	Rorug07G0330100 Rorug07G0330200 Rorug07G0330300 Rorug07G0330400 Rorug07G0330500 Rorug07G0330500
rosa_samantha	Rh7AG484000 Rh7BG457100 Rh7CG501500 Rh7DG469700
rosa_wichuraiana	Rw7G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	12
Acc36I	ACCTGC	1 cut(s)	511
AccB7I	CCANNNNNTGG	1 cut(s)	465
AciI	CCGC	2 cut(s)	425, 491
AclWI	GGATC	1 cut(s)	357
AfaI	GTAC	4 cut(s)	227, 293, 649, 672
AfiI	CCNNNNNNNGG	2 cut(s)	465, 487
AflIII	ACRYGT	1 cut(s)	178
AgsI	TTSAA	2 cut(s)	136, 248
AhdI	GACNNNNNGTC	1 cut(s)	589
AjnI	CCWGG	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	622
AlwI	GGATC	1 cut(s)	357
AlwNI	CAGNNNCTG	2 cut(s)	503, 557
AoxI	GGCC	2 cut(s)	37, 492
ApeKI	GCWGC	3 cut(s)	377, 518, 641
Asp700I	GAANNNNTTC	1 cut(s)	481
AspA2I	CCTAGG	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	2 cut(s)	166, 172
AsuII	TTCGAA	1 cut(s)	126
AvrII	CCTAGG	1 cut(s)	208
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
BbvI	GCAGC	3 cut(s)	364, 505, 628
BccI	CCATC	2 cut(s)	100, 256
BceAI	ACGGC	1 cut(s)	189
BciT130I	CCWGG	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	622
BfaI	CTAG	3 cut(s)	209, 278, 645
BfuAI	ACCTGC	1 cut(s)	511
BisI	GCNGC	4 cut(s)	378, 492, 519, 642
BlnI	CCTAGG	1 cut(s)	208
BlsI	GCNGC	4 cut(s)	379, 493, 520, 643
Bme1390I	CCNGG	1 cut(s)	93
BmeRI	GACNNNNNGTC	1 cut(s)	589
BmgT120I	GGNCC	1 cut(s)	37
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	550
BpmI	CTGGAG	2 cut(s)	75, 392
Bpu14I	TTCGAA	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	208, 598
BsaWI	WCCGGW	2 cut(s)	610, 650
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 487
Bse118I	RCCGGY	1 cut(s)	634
Bse1I	ACTGG	2 cut(s)	375, 513
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	208, 598
BseGI	GGATG	5 cut(s)	120, 325, 438, 448, 593
BseLI	CCNNNNNNNGG	2 cut(s)	465, 487
BseMII	CTCAG	3 cut(s)	510, 564, 633
BseNI	ACTGG	2 cut(s)	375, 513
BseXI	GCAGC	3 cut(s)	364, 505, 628
BshFI	GGCC	2 cut(s)	39, 494
BsiSI	CCGG	3 cut(s)	611, 635, 651
BslI	CCNNNNNNNGG	2 cut(s)	465, 487
BsmAI	GTCTC	1 cut(s)	622
BsmI	GAATGC	2 cut(s)	76, 380
BsnI	GGCC	2 cut(s)	39, 494
Bsp119I	TTCGAA	1 cut(s)	126
Bsp1407I	TGTACA	2 cut(s)	225, 670
Bsp143I	GATC	1 cut(s)	349
Bsp19I	CCATGG	1 cut(s)	598
BspACI	CCGC	2 cut(s)	425, 491
BspANI	GGCC	2 cut(s)	39, 494
BspCNI	CTCAG	3 cut(s)	509, 563, 632
BspMI	ACCTGC	1 cut(s)	511
BspPI	GGATC	1 cut(s)	357
BspT104I	TTCGAA	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	634
BsrGI	TGTACA	2 cut(s)	225, 670
BsrI	ACTGG	2 cut(s)	375, 513
BssAI	RCCGGY	1 cut(s)	634
BssECI	CCNNGG	2 cut(s)	208, 598
BssMI	GATC	1 cut(s)	349
BssT1I	CCWWGG	2 cut(s)	208, 598
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	2 cut(s)	194, 225
BstAUI	TGTACA	2 cut(s)	225, 670
BstBI	TTCGAA	1 cut(s)	126
BstDEI	CTNAG	3 cut(s)	496, 550, 619
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	5 cut(s)	120, 325, 438, 448, 593
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	1 cut(s)	622
BstMBI	GATC	1 cut(s)	349
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	364, 505, 628
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	39, 494
BtgI	CCRYGG	1 cut(s)	598
BtsCI	GGATG	5 cut(s)	120, 325, 438, 448, 593
BtsIMutI	CAGTG	1 cut(s)	520
BveI	ACCTGC	1 cut(s)	511
CaiI	CAGNNNCTG	2 cut(s)	503, 557
Cfr10I	RCCGGY	1 cut(s)	634
Cfr13I	GGNCC	1 cut(s)	37
Csp6I	GTAC	4 cut(s)	226, 292, 648, 671
CviAII	CATG	3 cut(s)	64, 179, 599
CviJI	RGCY	6 cut(s)	39, 271, 377, 494, 634, 641
CviKI_1	RGCY	6 cut(s)	39, 271, 377, 494, 634, 641
CviQI	GTAC	4 cut(s)	226, 292, 648, 671
DdeI	CTNAG	3 cut(s)	496, 550, 619
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
DraI	TTTAAA	1 cut(s)	81
DrdI	GACNNNNNNGTC	1 cut(s)	12
DriI	GACNNNNNGTC	1 cut(s)	589
DseDI	GACNNNNNNGTC	1 cut(s)	12
Eam1105I	GACNNNNNGTC	1 cut(s)	589
Eco130I	CCWWGG	2 cut(s)	208, 598
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	208, 598
ErhI	CCWWGG	2 cut(s)	208, 598
FaeI	CATG	3 cut(s)	67, 182, 602
FaiI	YATR	7 cut(s)	58, 65, 180, 362, 413, 423, 600
FatI	CATG	3 cut(s)	63, 178, 598
Fnu4HI	GCNGC	4 cut(s)	378, 492, 519, 642
FokI	GGATG	5 cut(s)	127, 332, 445, 455, 580
Fsp4HI	GCNGC	4 cut(s)	378, 492, 519, 642
FspBI	CTAG	3 cut(s)	209, 278, 645
GluI	GCNGC	4 cut(s)	378, 492, 519, 642
GsuI	CTGGAG	2 cut(s)	75, 392
HaeIII	GGCC	2 cut(s)	39, 494
HapII	CCGG	3 cut(s)	611, 635, 651
Hin1II	CATG	3 cut(s)	67, 182, 602
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	4 cut(s)	281, 533, 548, 554
HpaII	CCGG	3 cut(s)	611, 635, 651
HphI	GGTGA	2 cut(s)	166, 172
Hpy166II	GTNNAC	4 cut(s)	30, 313, 459, 671
Hpy188I	TCNGA	7 cut(s)	18, 319, 499, 553, 559, 568, 622
Hpy188III	TCNNGA	3 cut(s)	98, 200, 278
Hpy8I	GTNNAC	4 cut(s)	30, 313, 459, 671
HpyAV	CCTTC	5 cut(s)	28, 122, 151, 492, 659
HpyCH4III	ACNGT	2 cut(s)	194, 225
HpyCH4IV	ACGT	2 cut(s)	10, 290
HpyCH4V	TGCA	3 cut(s)	63, 218, 380
HpyF3I	CTNAG	3 cut(s)	496, 550, 619
HpySE526I	ACGT	2 cut(s)	10, 290
Hsp92II	CATG	3 cut(s)	67, 182, 602
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	3 cut(s)	364, 505, 628
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	3 cut(s)	209, 278, 645
MaeII	ACGT	2 cut(s)	10, 290
MaeIII	GTNAC	2 cut(s)	160, 508
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	3 cut(s)	77, 349, 463
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	2 cut(s)	136, 462
MlyI	GAGTC	2 cut(s)	290, 542
MnlI	CCTC	6 cut(s)	99, 340, 367, 433, 467, 505
MroXI	GAANNNNTTC	1 cut(s)	481
MseI	TTAA	2 cut(s)	45, 80
MspI	CCGG	3 cut(s)	611, 635, 651
MspR9I	CCNGG	1 cut(s)	93
Mva1269I	GAATGC	2 cut(s)	76, 380
MvaI	CCWGG	1 cut(s)	93
NcoI	CCATGG	1 cut(s)	598
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	3 cut(s)	67, 182, 602
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	1 cut(s)	182
NspV	TTCGAA	1 cut(s)	126
PciI	ACATGT	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PctI	GAATGC	2 cut(s)	76, 380
PdmI	GAANNNNTTC	1 cut(s)	481
PfeI	GAWTC	2 cut(s)	533, 554
PflMI	CCANNNNNTGG	1 cut(s)	465
PkrI	GCNGC	4 cut(s)	379, 493, 520, 643
PleI	GAGTC	2 cut(s)	289, 542
PpsI	GAGTC	2 cut(s)	289, 542
PscI	ACATGT	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	37
PstNI	CAGNNNCTG	2 cut(s)	503, 557
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	4 cut(s)	227, 293, 649, 672
RsaNI	GTAC	4 cut(s)	226, 292, 648, 671
SaqAI	TTAA	2 cut(s)	45, 80
SatI	GCNGC	4 cut(s)	378, 492, 519, 642
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	37
SchI	GAGTC	2 cut(s)	290, 542
ScrFI	CCNGG	1 cut(s)	93
SetI	ASST	8 cut(s)	13, 97, 133, 162, 210, 293, 505, 670
SfaNI	GCATC	1 cut(s)	550
SfuI	TTCGAA	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
Sse9I	AATT	2 cut(s)	136, 462
SsiI	CCGC	2 cut(s)	425, 491
SspI	AATATT	2 cut(s)	50, 148
SspMI	CTAG	3 cut(s)	209, 278, 645
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	2 cut(s)	208, 598
TaaI	ACNGT	2 cut(s)	194, 225
TaiI	ACGT	2 cut(s)	13, 293
TaqI	TCGA	3 cut(s)	126, 260, 408
TasI	AATT	2 cut(s)	136, 462
TatI	WGTACW	2 cut(s)	225, 670
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	2 cut(s)	533, 554
Tru1I	TTAA	2 cut(s)	45, 80
Tru9I	TTAA	2 cut(s)	45, 80
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	3 cut(s)	377, 518, 641
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	2 cut(s)	449, 516
TspRI	CASTG	1 cut(s)	520
Van91I	CCANNNNNTGG	1 cut(s)	465
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	1 cut(s)	182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmaJI	CCTAGG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	481
XspI	CTAG	3 cut(s)	209, 278, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.