Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006516

Physical Location & Seq

Genomic Coordinates Forward (+)

67100784 .. 67105367

Gene Structure 4584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG469700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGACAAGCATGGGAGACCAGTTCTTGTCATGAGGCCTAGTTGCCAGAACTCAAAGTCAACGAAAGGCCAGATACGATATTTGGTGTATTGCTTGGAGAATGCTATATTAAATCTTCCACCCGACCAGGAACAGATGGTTTGGCTGATTGATTTTCAAGGTTTCAATTTGTCACATATTTCAGTGAAGGTGACACGTGAAACAGCCCATGTTTTGCAAGACCATTATCCAGAACGCCTAGGTCTTGCAATACTCTACAACCCACCCAAGTTTTTTGAGCCATTCTATACGTTAGTAAAGCCCTTTCTAGAGCCAAAGACTTACAATAAAGTGAAGTTTGTGTATGCGGAAGACCTCAACACCAAGAAGATAATGATGGAGGATCTATTTGATATTGAAAAACTGGAGGCTGCATTTGGCGGAAATGAGGCTGCAGGTTTTGATATAAATAAGTACGCCGAGAGGATGAAAGAGGATGATAAGAAGAGGTCCACGATTTGCACAACTGGAAGTCAGCCCTTGGCAGCCTCACAACCTGTCCTGACCAGTGCTGCTCTCTCATTGGATCCTGTCAAGTTAGACTCAAATTCAGATGCTTCTGATAACGAGAAAACAGACAGTTCCTCATCCCATGGCATAGAACCAGAAATTATCTCAGACCACAATATGGCGGTGGCTGCTAGTACCACAAAAGCTGCCGATGATGTAGATCAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

239

Amino Acids

26.75

Weight (kDa)

5.18

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	2 - 141	9.6e-35	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	5 - 114	2.7e-09	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08690 AT4G08690 AT4G08690
fragaria_vesca	FvH4_5g37870 FvH4_5g37870 FvH4_5g37870
malus_domestica	MD08G1179500.v1.1 MD15G1364800.v1.1
prunus_persica	Prupe.1G512800_v2.0.a1
pyrus_communis	pycom08g15370 pycom15g32720
rosa_chinensis	RchiOBHm_Chr7g0239851
rosa_laevigata	RLG00000000725
rosa_multiflora	Rmu_co8357749.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220760
rosa_rugosa	Rorug07G0330100 Rorug07G0330200 Rorug07G0330300 Rorug07G0330400 Rorug07G0330500 Rorug07G0330500
rosa_samantha	Rh7AG484000 Rh7BG457100 Rh7CG501500 Rh7DG469700
rosa_wichuraiana	Rw7G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	425
AccB7I	CCANNNNNTGG	1 cut(s)	667
AciI	CCGC	3 cut(s)	347, 420, 671
AclWI	GGATC	3 cut(s)	390, 560, 573
AcsI	RAATTY	1 cut(s)	586
AcvI	CACGTG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	455, 685
AfiI	CCNNNNNNNGG	1 cut(s)	667
AflIII	ACRYGT	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	158, 166, 398
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	1 cut(s)	695
AluI	AGCT	1 cut(s)	695
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	3 cut(s)	390, 560, 573
AoxI	GGCC	2 cut(s)	35, 67
ApeKI	GCWGC	6 cut(s)	410, 431, 524, 551, 677, 695
ApoI	RAATTY	1 cut(s)	586
AspA2I	CCTAGG	1 cut(s)	238
AspS9I	GGNCC	1 cut(s)	489
AsuHPI	GGTGA	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	489
AvrII	CCTAGG	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	565
BbrPI	CACGTG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	357
BbvI	GCAGC	6 cut(s)	397, 418, 536, 538, 664, 682
BccI	CCATC	2 cut(s)	130, 370
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	4 cut(s)	39, 239, 308, 681
BfmI	CTRYAG	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	425
BisI	GCNGC	6 cut(s)	411, 432, 525, 552, 678, 696
BlnI	CCTAGG	1 cut(s)	238
BlsI	GCNGC	6 cut(s)	412, 433, 526, 553, 679, 697
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	489
BmgT120I	GGNCC	1 cut(s)	489
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	583
BpiI	GAAGAC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	425
BsaAI	YACGTR	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	708
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	238, 519, 631
Bsc4I	CCNNNNNNNGG	1 cut(s)	667
Bse1I	ACTGG	4 cut(s)	20, 408, 511, 546
Bse8I	GATNNNNATC	1 cut(s)	708
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	3 cut(s)	238, 519, 631
BseGI	GGATG	3 cut(s)	471, 481, 626
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	1 cut(s)	667
BseMII	CTCAG	1 cut(s)	669
BseNI	ACTGG	4 cut(s)	20, 408, 511, 546
BseXI	GCAGC	6 cut(s)	397, 418, 536, 538, 664, 682
BshFI	GGCC	2 cut(s)	37, 69
BslI	CCNNNNNNNGG	1 cut(s)	667
BsmAI	GTCTC	1 cut(s)	10
BsmI	GAATGC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	37, 69
Bso31I	GGTCTC	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	382, 565, 709
Bsp19I	CCATGG	1 cut(s)	631
BspACI	CCGC	3 cut(s)	347, 420, 671
BspANI	GGCC	2 cut(s)	37, 69
BspCNI	CTCAG	1 cut(s)	668
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	567
BspMAI	CTGCAG	1 cut(s)	436
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	3 cut(s)	390, 560, 573
BspTNI	GGTCTC	1 cut(s)	10
BsrI	ACTGG	4 cut(s)	20, 408, 511, 546
BssECI	CCNNGG	3 cut(s)	238, 519, 631
BssMI	GATC	3 cut(s)	382, 565, 709
BssT1I	CCWWGG	3 cut(s)	238, 519, 631
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	620
Bst6I	CTCTTC	1 cut(s)	479
BstBAI	YACGTR	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	655
BstDSI	CCRYGG	1 cut(s)	631
BstF5I	GGATG	3 cut(s)	471, 481, 626
BstKTI	GATC	3 cut(s)	385, 568, 712
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	3 cut(s)	382, 565, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	432
BstV1I	GCAGC	6 cut(s)	397, 418, 536, 538, 664, 682
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	2 cut(s)	382, 565
BstYI	RGATCY	2 cut(s)	382, 565
BsuRI	GGCC	2 cut(s)	37, 69
BtgI	CCRYGG	1 cut(s)	631
BtsCI	GGATG	3 cut(s)	471, 481, 626
BtsIMutI	CAGTG	2 cut(s)	189, 553
BveI	ACCTGC	1 cut(s)	425
CciI	TCATGA	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	489
Csp6I	GTAC	2 cut(s)	454, 684
CviAII	CATG	4 cut(s)	11, 31, 209, 632
CviQI	GTAC	2 cut(s)	454, 684
DdeI	CTNAG	1 cut(s)	655
DpnI	GATC	3 cut(s)	384, 567, 711
DpnII	GATC	3 cut(s)	382, 565, 709
Eam1104I	CTCTTC	1 cut(s)	479
EarI	CTCTTC	1 cut(s)	479
EciI	GGCGGA	1 cut(s)	435
Eco130I	CCWWGG	3 cut(s)	238, 519, 631
Eco147I	AGGCCT	1 cut(s)	37
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	489
Eco72I	CACGTG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	3 cut(s)	238, 519, 631
ErhI	CCWWGG	3 cut(s)	238, 519, 631
FaeI	CATG	4 cut(s)	14, 34, 212, 635
FatI	CATG	4 cut(s)	10, 30, 208, 631
Fnu4HI	GCNGC	6 cut(s)	411, 432, 525, 552, 678, 696
FokI	GGATG	3 cut(s)	478, 488, 613
Fsp4HI	GCNGC	6 cut(s)	411, 432, 525, 552, 678, 696
FspBI	CTAG	4 cut(s)	39, 239, 308, 681
GluI	GCNGC	6 cut(s)	411, 432, 525, 552, 678, 696
GsuI	CTGGAG	1 cut(s)	425
HaeIII	GGCC	2 cut(s)	37, 69
Hin1II	CATG	4 cut(s)	14, 34, 212, 635
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	1 cut(s)	581
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	2 cut(s)	60, 492
Hpy188I	TCNGA	3 cut(s)	592, 601, 658
Hpy188III	TCNNGA	4 cut(s)	31, 230, 308, 541
Hpy8I	GTNNAC	2 cut(s)	60, 492
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	620
HpyCH4IV	ACGT	2 cut(s)	196, 290
HpyCH4V	TGCA	5 cut(s)	217, 248, 413, 434, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	1 cut(s)	655
HpySE526I	ACGT	2 cut(s)	196, 290
Hsp92II	CATG	4 cut(s)	14, 34, 212, 635
Kzo9I	GATC	3 cut(s)	382, 565, 709
Lsp1109I	GCAGC	6 cut(s)	397, 418, 536, 538, 664, 682
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	4 cut(s)	39, 239, 308, 681
MaeII	ACGT	2 cut(s)	196, 290
MaeIII	GTNAC	2 cut(s)	171, 190
MalI	GATC	3 cut(s)	384, 567, 711
MboI	GATC	3 cut(s)	382, 565, 709
MboII	GAAGA	4 cut(s)	107, 362, 379, 496
MflI	RGATCY	2 cut(s)	382, 565
MluCI	AATT	3 cut(s)	166, 586, 648
MlyI	GAGTC	1 cut(s)	575
MseI	TTAA	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	128
Mva1269I	GAATGC	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	677
NcoI	CCATGG	1 cut(s)	631
NdeII	GATC	3 cut(s)	382, 565, 709
NlaIII	CATG	4 cut(s)	14, 34, 212, 635
NlaIV	GGNNCC	1 cut(s)	567
NmeAIII	GCCGAG	1 cut(s)	484
NmuCI	GTSAC	2 cut(s)	171, 190
PagI	TCATGA	1 cut(s)	30
PceI	AGGCCT	1 cut(s)	37
PctI	GAATGC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	667
PkrI	GCNGC	6 cut(s)	412, 433, 526, 553, 679, 697
PleI	GAGTC	1 cut(s)	575
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	575
Ppu21I	YACGTR	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	126
PspCI	CACGTG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	567
PspPI	GGNCC	1 cut(s)	489
PstI	CTGCAG	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	382, 565
RsaI	GTAC	2 cut(s)	455, 685
RsaNI	GTAC	2 cut(s)	454, 684
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	6 cut(s)	411, 432, 525, 552, 678, 696
Sau3AI	GATC	3 cut(s)	382, 565, 709
Sau96I	GGNCC	1 cut(s)	489
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	128
SfaNI	GCATC	1 cut(s)	583
SfcI	CTRYAG	1 cut(s)	432
SinI	GGWCC	1 cut(s)	489
Sse9I	AATT	3 cut(s)	166, 586, 648
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	3 cut(s)	347, 420, 671
SspMI	CTAG	4 cut(s)	39, 239, 308, 681
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	3 cut(s)	238, 519, 631
TaaI	ACNGT	1 cut(s)	620
TaiI	ACGT	2 cut(s)	199, 293
TasI	AATT	3 cut(s)	166, 586, 648
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	2 cut(s)	189, 553
TseFI	GTSAC	2 cut(s)	171, 190
TseI	GCWGC	6 cut(s)	410, 431, 524, 551, 677, 695
Tsp45I	GTSAC	2 cut(s)	171, 190
TspDTI	ATGAA	1 cut(s)	482
TspRI	CASTG	2 cut(s)	189, 553
Van91I	CCANNNNNTGG	1 cut(s)	667
VpaK11BI	GGWCC	1 cut(s)	489
XapI	RAATTY	1 cut(s)	586
XbaI	TCTAGA	1 cut(s)	307
XmaJI	CCTAGG	1 cut(s)	238
XspI	CTAG	4 cut(s)	39, 239, 308, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.