Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8357749.1

Orthogroup ID

OG0006516

Physical Location & Seq

Genomic Coordinates Reverse (-)

380 .. 811

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8357749.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgtatttgttgcagttagtaaagccctttctagagccaaagacttacaataaagtgaagtttgtgtatgcggaagacctcaacaccaagaagataatggaggatctatttgatattgaaaaactggaggctgcatttggcggaaatgatactgcaggttttgatataaataagtacgccgagaggatgaaagaggatgataagacgatttgcacagctggaagtctgcccttggcagcctcacaacctgttctgaccagtgctgctctctcattggatcctgtcaagttagactcaaattcagatgcttctgataacgagaaaacagacagttcctcatcccatggcatagaaccagaaattatctcagaccacaatatggcggtggctgctagtaccacaaaagctgccgatgatgtagatcaagtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

143

Amino Acids

15.55

Weight (kDa)

4.42

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08690 AT4G08690 AT4G08690
fragaria_vesca	FvH4_5g37870 FvH4_5g37870 FvH4_5g37870
malus_domestica	MD08G1179500.v1.1 MD15G1364800.v1.1
prunus_persica	Prupe.1G512800_v2.0.a1
pyrus_communis	pycom08g15370 pycom15g32720
rosa_chinensis	RchiOBHm_Chr7g0239851
rosa_laevigata	RLG00000000725
rosa_multiflora	Rmu_co8357749.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220760
rosa_rugosa	Rorug07G0330100 Rorug07G0330200 Rorug07G0330300 Rorug07G0330400 Rorug07G0330500 Rorug07G0330500
rosa_samantha	Rh7AG484000 Rh7BG457100 Rh7CG501500 Rh7DG469700
rosa_wichuraiana	Rw7G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	379
AciI	CCGC	3 cut(s)	71, 141, 383
AclWI	GGATC	3 cut(s)	111, 272, 285
AcsI	RAATTY	1 cut(s)	298
AfaI	GTAC	2 cut(s)	176, 397
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	1 cut(s)	119
AluBI	AGCT	2 cut(s)	218, 407
AluI	AGCT	2 cut(s)	218, 407
AlwI	GGATC	3 cut(s)	111, 272, 285
ApeKI	GCWGC	5 cut(s)	131, 236, 263, 389, 407
ApoI	RAATTY	1 cut(s)	298
BamHI	GGATCC	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	5 cut(s)	118, 248, 250, 376, 394
BfaI	CTAG	2 cut(s)	32, 393
BfmI	CTRYAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	146
BisI	GCNGC	5 cut(s)	132, 237, 264, 390, 408
BlsI	GCNGC	5 cut(s)	133, 238, 265, 391, 409
BmiI	GGNNCC	1 cut(s)	279
BmsI	GCATC	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	146
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	231, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	129, 258
Bse8I	GATNNNNATC	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	231, 343
BseGI	GGATG	3 cut(s)	192, 202, 338
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	2 cut(s)	129, 258
BseXI	GCAGC	5 cut(s)	118, 248, 250, 376, 394
BslI	CCNNNNNNNGG	1 cut(s)	379
Bsp143I	GATC	3 cut(s)	103, 277, 421
Bsp19I	CCATGG	1 cut(s)	343
BspACI	CCGC	3 cut(s)	71, 141, 383
BspCNI	CTCAG	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	279
BspMAI	CTGCAG	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	146
BspPI	GGATC	3 cut(s)	111, 272, 285
BsrI	ACTGG	2 cut(s)	129, 258
BssECI	CCNNGG	2 cut(s)	231, 343
BssMI	GATC	3 cut(s)	103, 277, 421
BssT1I	CCWWGG	2 cut(s)	231, 343
Bst4CI	ACNGT	1 cut(s)	332
BstDEI	CTNAG	1 cut(s)	367
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	3 cut(s)	192, 202, 338
BstKTI	GATC	3 cut(s)	106, 280, 424
BstMBI	GATC	3 cut(s)	103, 277, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	5 cut(s)	118, 248, 250, 376, 394
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	103, 277
BstYI	RGATCY	2 cut(s)	103, 277
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	3 cut(s)	192, 202, 338
BtsIMutI	CAGTG	1 cut(s)	265
BveI	ACCTGC	1 cut(s)	146
Csp6I	GTAC	2 cut(s)	175, 396
CviAII	CATG	1 cut(s)	344
CviJI	RGCY	7 cut(s)	25, 37, 131, 218, 239, 389, 407
CviKI_1	RGCY	7 cut(s)	25, 37, 131, 218, 239, 389, 407
CviQI	GTAC	2 cut(s)	175, 396
DdeI	CTNAG	1 cut(s)	367
DpnI	GATC	3 cut(s)	105, 279, 423
DpnII	GATC	3 cut(s)	103, 277, 421
EciI	GGCGGA	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	231, 343
EcoT14I	CCWWGG	2 cut(s)	231, 343
ErhI	CCWWGG	2 cut(s)	231, 343
FaeI	CATG	1 cut(s)	347
FaiI	YATR	6 cut(s)	69, 167, 345, 350, 380, 430
FatI	CATG	1 cut(s)	343
Fnu4HI	GCNGC	5 cut(s)	132, 237, 264, 390, 408
FokI	GGATG	3 cut(s)	199, 209, 325
Fsp4HI	GCNGC	5 cut(s)	132, 237, 264, 390, 408
FspBI	CTAG	2 cut(s)	32, 393
GluI	GCNGC	5 cut(s)	132, 237, 264, 390, 408
GsuI	CTGGAG	1 cut(s)	146
Hin1II	CATG	1 cut(s)	347
HinfI	GANTC	1 cut(s)	293
Hpy188I	TCNGA	4 cut(s)	255, 304, 313, 370
Hpy188III	TCNNGA	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	4 cut(s)	13, 134, 155, 213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	1 cut(s)	367
Hsp92II	CATG	1 cut(s)	347
Kzo9I	GATC	3 cut(s)	103, 277, 421
LpnPI	CCDG	7 cut(s)	110, 141, 204, 261, 271, 294, 369
Lsp1109I	GCAGC	5 cut(s)	118, 248, 250, 376, 394
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	2 cut(s)	32, 393
MalI	GATC	3 cut(s)	105, 279, 423
MboI	GATC	3 cut(s)	103, 277, 421
MboII	GAAGA	2 cut(s)	86, 103
MflI	RGATCY	2 cut(s)	103, 277
MluCI	AATT	2 cut(s)	298, 360
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	7 cut(s)	89, 94, 121, 177, 187, 250, 346
MspA1I	CMGCKG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	389
NcoI	CCATGG	1 cut(s)	343
NdeII	GATC	3 cut(s)	103, 277, 421
NlaIII	CATG	1 cut(s)	347
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	205
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	5 cut(s)	133, 238, 265, 391, 409
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	279
PstI	CTGCAG	1 cut(s)	157
PsuI	RGATCY	2 cut(s)	103, 277
PvuII	CAGCTG	1 cut(s)	218
RsaI	GTAC	2 cut(s)	176, 397
RsaNI	GTAC	2 cut(s)	175, 396
SatI	GCNGC	5 cut(s)	132, 237, 264, 390, 408
Sau3AI	GATC	3 cut(s)	103, 277, 421
SchI	GAGTC	1 cut(s)	287
SetI	ASST	5 cut(s)	81, 160, 220, 250, 409
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	1 cut(s)	153
Sse9I	AATT	2 cut(s)	298, 360
SsiI	CCGC	3 cut(s)	71, 141, 383
SspMI	CTAG	2 cut(s)	32, 393
StyI	CCWWGG	2 cut(s)	231, 343
TaaI	ACNGT	1 cut(s)	332
TasI	AATT	2 cut(s)	298, 360
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	5 cut(s)	131, 236, 263, 389, 407
TspDTI	ATGAA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	265
Van91I	CCANNNNNTGG	1 cut(s)	379
XapI	RAATTY	1 cut(s)	298
XbaI	TCTAGA	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XspI	CTAG	2 cut(s)	32, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.