Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006516

Physical Location & Seq

Genomic Coordinates Forward (+)

27898839 .. 27903417

Gene Structure 4579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g37870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGAAGGAAAGGAAGGCAGATGGGTTCGGCTTACAAATAGCACGTGTTGGTCGTGGTTGGGCTTCAGTTTCAAACTCAAACACAAACACAGCATCATCACTCTGATCCCAGATCCCTATGGGTCTCTGCGACATCTGAGGAGCTCCGAGATATTGGCTTTGCTCAGTCAGCAACCACCCAGTTTTGTCTTTGGTCCAGAGTTTCCCCTCAAAACTATGAGTGCGGGAATAAAAAAATCTTCCTCAAATGGCTCTGAGAGTATTTTAACAAGTGAAGAGCAGCAGGCAAAGATTAATGAGGTGAGAAAATTGTTGAAGGCAGTACCCGAGAAGCTGTCCACATACTGTTCTGATGCATCCATTGCAAGGCATCTGAGGGCCAGAAACTGGAATGTCAAGAAGGCCACCAAAATGTTGAAAGATACCTTAAAGTGGAGGTCAGAATACAAACCGGAGGAGATTTGTTGGGAGGAGGTAGCTCATGAAGCAGAGACAGGAAAAATTTACAGATCGAATTATATGGACAAGCATGGGAGACCAGTTCTTGTCATGAGACCTAGTTGCCAGAACTCAAAGTCAACAAAAGGCCAGATACGATATTTGGTATATTGCATGGAGAATGCTATTTTAAATCTTCCACCAGACCAGGAACAGATGGTTTGGCTGATTGATTTTCAAGGTTTCAATTTGTCACATATATCGGTGAAGTTGACACGCGAAACTGCCCATGTTTTGCAAGACCATTATCCAGAACGCCTAGGTCTTGCAATACTCTACAACCCACCCAAATTTTTTGAACCATTCTTTACGTTAGTAAAGCCTTTTTTAGAGACAAAGACTTACAACAAAGTCAAGTTTGTGTATACGGATGACCTCAACACCAAGAAGGTAATGGAGGATCTATTTGATATTGAAAAACTGGAGGCTGCATTTGGAGGAAATGATACTGGAGGTTTTGATATAAATAAGTATGCTGAGAGGATGAAAGAGGATGATAAGAAGATGCCCTTGGTAGCCTCACATCCTGTCGTGACCAGTGCTGCTCTCTCATTGGATCCTATCAAGGTAGACTCAAGTTCTGATAATGAGAAAACAGACGCTTCTGATAATGAGAAAACAGATGCTTCTGATAATGAGAAAACAGACGGTTCCTTATCCCATGGTATAGAACCAGAAATTGTCTCAGACCGCAATATGCCGGTGGCTTCTAGTACCAGAAATGCTACTGATGTTGTAGAACAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

416

Amino Acids

47.19

Weight (kDa)

6.45

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	98 - 141	2.4e-06	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	164 - 313	1.9e-35	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	178 - 288	9.1e-09	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08690 AT4G08690 AT4G08690
fragaria_vesca	FvH4_5g37870 FvH4_5g37870 FvH4_5g37870
malus_domestica	MD08G1179500.v1.1 MD15G1364800.v1.1
prunus_persica	Prupe.1G512800_v2.0.a1
pyrus_communis	pycom08g15370 pycom15g32720
rosa_chinensis	RchiOBHm_Chr7g0239851
rosa_laevigata	RLG00000000725
rosa_multiflora	Rmu_co8357749.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220760
rosa_rugosa	Rorug07G0330100 Rorug07G0330200 Rorug07G0330300 Rorug07G0330400 Rorug07G0330500 Rorug07G0330500
rosa_samantha	Rh7AG484000 Rh7BG457100 Rh7CG501500 Rh7DG469700
rosa_wichuraiana	Rw7G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	387
AccI	GTMKAC	2 cut(s)	863, 1068
AccII	CGCG	1 cut(s)	717
AciI	CCGC	2 cut(s)	224, 1189
AclWI	GGATC	5 cut(s)	100, 107, 906, 1049, 1062
AcsI	RAATTY	2 cut(s)	501, 788
AcuI	CTGAAG	1 cut(s)	49
AcvI	CACGTG	1 cut(s)	45
AfaI	GTAC	2 cut(s)	324, 1213
AfiI	CCNNNNNNNGG	3 cut(s)	366, 387, 432
AflIII	ACRYGT	1 cut(s)	44
AgsI	TTSAA	7 cut(s)	73, 316, 418, 677, 685, 797, 914
AjnI	CCWGG	1 cut(s)	645
AjuI	GAANNNNNNNTTGG	2 cut(s)	992, 1024
AluBI	AGCT	3 cut(s)	144, 334, 479
AluI	AGCT	3 cut(s)	144, 334, 479
Alw21I	GWGCWC	1 cut(s)	146
Alw26I	GTCTC	6 cut(s)	129, 485, 529, 547, 824, 1186
AlwI	GGATC	5 cut(s)	100, 107, 906, 1049, 1062
AlwNI	CAGNNNCTG	1 cut(s)	387
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	3 cut(s)	378, 402, 586
ApeKI	GCWGC	3 cut(s)	280, 926, 1040
ApoI	RAATTY	2 cut(s)	501, 788
AseI	ATTAAT	1 cut(s)	294
AspA2I	CCTAGG	1 cut(s)	757
AspS9I	GGNCC	2 cut(s)	194, 378
AsuHPI	GGTGA	2 cut(s)	313, 715
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	194
AvrII	CCTAGG	1 cut(s)	757
BamHI	GGATCC	1 cut(s)	1054
BanII	GRGCYC	1 cut(s)	146
BbrPI	CACGTG	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	292, 913, 1027
BccI	CCATC	2 cut(s)	15, 649
BciT130I	CCWGG	1 cut(s)	647
BcoDI	GTCTC	6 cut(s)	129, 485, 529, 547, 824, 1186
BfaI	CTAG	3 cut(s)	558, 758, 1209
BisI	GCNGC	3 cut(s)	281, 927, 1041
BlnI	CCTAGG	1 cut(s)	757
BlsI	GCNGC	3 cut(s)	282, 928, 1042
Bme1390I	CCNGG	1 cut(s)	647
Bme18I	GGWCC	1 cut(s)	194
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	2 cut(s)	194, 378
BmiI	GGNNCC	2 cut(s)	1056, 1150
BmrFI	CCNGG	1 cut(s)	647
BmrI	ACTGGG	1 cut(s)	174
BmsI	GCATC	6 cut(s)	102, 343, 365, 379, 993, 1111
BmuI	ACTGGG	1 cut(s)	174
BpmI	CTGGAG	2 cut(s)	941, 969
BpuEI	CTTGAG	1 cut(s)	1057
BsaAI	YACGTR	1 cut(s)	45
BsaI	GGTCTC	3 cut(s)	129, 529, 547
BsaJI	CCNNGG	3 cut(s)	757, 1008, 1159
BsaWI	WCCGGW	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	3 cut(s)	366, 387, 432
Bse118I	RCCGGY	1 cut(s)	1198
Bse1I	ACTGG	6 cut(s)	180, 392, 539, 924, 952, 1035
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	3 cut(s)	757, 1008, 1159
BseGI	GGATG	5 cut(s)	356, 874, 987, 997, 1021
BseLI	CCNNNNNNNGG	3 cut(s)	366, 387, 432
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	6 cut(s)	128, 178, 246, 365, 966, 1197
BseNI	ACTGG	6 cut(s)	180, 392, 539, 924, 952, 1035
BseRI	GAGGAG	3 cut(s)	154, 470, 485
BseXI	GCAGC	3 cut(s)	292, 913, 1027
Bsh1236I	CGCG	1 cut(s)	717
BshFI	GGCC	3 cut(s)	380, 404, 588
BsiHKAI	GWGCWC	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	2 cut(s)	452, 1199
BslI	CCNNNNNNNGG	3 cut(s)	366, 387, 432
BsmAI	GTCTC	6 cut(s)	129, 485, 529, 547, 824, 1186
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	3 cut(s)	380, 404, 588
Bso31I	GGTCTC	3 cut(s)	129, 529, 547
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	5 cut(s)	105, 112, 509, 898, 1054
Bsp19I	CCATGG	1 cut(s)	1159
BspACI	CCGC	2 cut(s)	224, 1189
BspANI	GGCC	3 cut(s)	380, 404, 588
BspCNI	CTCAG	6 cut(s)	129, 177, 247, 366, 967, 1196
BspFNI	CGCG	1 cut(s)	717
BspHI	TCATGA	2 cut(s)	481, 549
BspLI	GGNNCC	2 cut(s)	1056, 1150
BspPI	GGATC	5 cut(s)	100, 107, 906, 1049, 1062
BspQI	GCTCTTC	1 cut(s)	270
BspTNI	GGTCTC	3 cut(s)	129, 529, 547
BsrDI	GCAATG	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	1198
BsrI	ACTGG	6 cut(s)	180, 392, 539, 924, 952, 1035
BssAI	RCCGGY	1 cut(s)	1198
BssECI	CCNNGG	3 cut(s)	757, 1008, 1159
BssMI	GATC	5 cut(s)	105, 112, 509, 898, 1054
BssNAI	GTATAC	1 cut(s)	864
BssT1I	CCWWGG	3 cut(s)	757, 1008, 1159
Bst1107I	GTATAC	1 cut(s)	864
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	2 cut(s)	347, 1148
Bst6I	CTCTTC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	362
BstBAI	YACGTR	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	6 cut(s)	137, 164, 255, 374, 975, 1183
BstDSI	CCRYGG	1 cut(s)	1159
BstF5I	GGATG	5 cut(s)	356, 874, 987, 997, 1021
BstFNI	CGCG	1 cut(s)	717
BstKTI	GATC	5 cut(s)	108, 115, 512, 901, 1057
BstMAI	GTCTC	6 cut(s)	129, 485, 529, 547, 824, 1186
BstMBI	GATC	5 cut(s)	105, 112, 509, 898, 1054
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 362, 485
BstNI	CCWGG	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	645
BstUI	CGCG	1 cut(s)	717
BstV1I	GCAGC	3 cut(s)	292, 913, 1027
BstX2I	RGATCY	3 cut(s)	112, 898, 1054
BstYI	RGATCY	3 cut(s)	112, 898, 1054
BstZ17I	GTATAC	1 cut(s)	864
BsuRI	GGCC	3 cut(s)	380, 404, 588
BtgI	CCRYGG	1 cut(s)	1159
BtsCI	GGATG	5 cut(s)	356, 874, 987, 997, 1021
BtsIMutI	CAGTG	1 cut(s)	1042
Cac8I	GCNNGC	1 cut(s)	285
CaiI	CAGNNNCTG	1 cut(s)	387
CciI	TCATGA	2 cut(s)	481, 549
Cfr10I	RCCGGY	1 cut(s)	1198
Cfr13I	GGNCC	2 cut(s)	194, 378
CseI	GACGC	1 cut(s)	1106
Csp6I	GTAC	2 cut(s)	323, 1212
CviAII	CATG	6 cut(s)	482, 530, 550, 613, 728, 1160
CviQI	GTAC	2 cut(s)	323, 1212
DdeI	CTNAG	6 cut(s)	137, 164, 255, 374, 975, 1183
DpnI	GATC	5 cut(s)	107, 114, 511, 900, 1056
DpnII	GATC	5 cut(s)	105, 112, 509, 898, 1054
DraI	TTTAAA	1 cut(s)	630
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Ecl136II	GAGCTC	1 cut(s)	144
Eco130I	CCWWGG	3 cut(s)	757, 1008, 1159
Eco24I	GRGCYC	1 cut(s)	146
Eco31I	GGTCTC	3 cut(s)	129, 529, 547
Eco47I	GGWCC	1 cut(s)	194
Eco53kI	GAGCTC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	49
Eco72I	CACGTG	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	645
EcoT14I	CCWWGG	3 cut(s)	757, 1008, 1159
EcoT22I	ATGCAT	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	146
ErhI	CCWWGG	3 cut(s)	757, 1008, 1159
FaeI	CATG	6 cut(s)	485, 533, 553, 616, 731, 1163
FalI	AAGNNNNNCTT	2 cut(s)	992, 1024
FatI	CATG	6 cut(s)	481, 529, 549, 612, 727, 1159
FauI	CCCGC	1 cut(s)	217
FblI	GTMKAC	2 cut(s)	863, 1068
Fnu4HI	GCNGC	3 cut(s)	281, 927, 1041
FokI	GGATG	5 cut(s)	343, 881, 994, 1004, 1008
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	3 cut(s)	281, 927, 1041
FspBI	CTAG	3 cut(s)	558, 758, 1209
GluI	GCNGC	3 cut(s)	281, 927, 1041
GsuI	CTGGAG	2 cut(s)	941, 969
HaeIII	GGCC	3 cut(s)	380, 404, 588
HapII	CCGG	2 cut(s)	452, 1199
HgaI	GACGC	1 cut(s)	1106
Hin1II	CATG	6 cut(s)	485, 533, 553, 616, 731, 1163
HincII	GTYRAC	2 cut(s)	579, 711
HindII	GTYRAC	2 cut(s)	579, 711
HinfI	GANTC	1 cut(s)	1070
HpaII	CCGG	2 cut(s)	452, 1199
HphI	GGTGA	2 cut(s)	313, 715
Hpy166II	GTNNAC	5 cut(s)	339, 579, 711, 864, 1069
Hpy188III	TCNNGA	6 cut(s)	197, 397, 482, 550, 749, 1030
Hpy8I	GTNNAC	5 cut(s)	339, 579, 711, 864, 1069
HpyAV	CCTTC	4 cut(s)	8, 310, 394, 880
HpyCH4III	ACNGT	2 cut(s)	347, 1148
HpyCH4IV	ACGT	2 cut(s)	44, 809
HpyCH4V	TGCA	6 cut(s)	356, 365, 612, 736, 767, 929
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 362, 485
HpyF3I	CTNAG	6 cut(s)	137, 164, 255, 374, 975, 1183
HpySE526I	ACGT	2 cut(s)	44, 809
Hsp92II	CATG	6 cut(s)	485, 533, 553, 616, 731, 1163
Kzo9I	GATC	5 cut(s)	105, 112, 509, 898, 1054
LguI	GCTCTTC	1 cut(s)	270
LmnI	GCTCC	2 cut(s)	141, 149
Lsp1109I	GCAGC	3 cut(s)	292, 913, 1027
LweI	GCATC	6 cut(s)	102, 343, 365, 379, 993, 1111
MaeI	CTAG	3 cut(s)	558, 758, 1209
MaeII	ACGT	2 cut(s)	44, 809
MaeIII	GTNAC	2 cut(s)	690, 1030
MalI	GATC	5 cut(s)	107, 114, 511, 900, 1056
MboI	GATC	5 cut(s)	105, 112, 509, 898, 1054
MboII	GAAGA	4 cut(s)	231, 287, 626, 1012
MflI	RGATCY	3 cut(s)	112, 898, 1054
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	6 cut(s)	308, 501, 514, 685, 788, 1176
MlyI	GAGTC	1 cut(s)	1064
Mph1103I	ATGCAT	1 cut(s)	358
MseI	TTAA	4 cut(s)	266, 294, 428, 629
MslI	CAYNNNNRTG	1 cut(s)	410
MspI	CCGG	2 cut(s)	452, 1199
MspR9I	CCNGG	1 cut(s)	647
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	1 cut(s)	647
MvnI	CGCG	1 cut(s)	717
MwoI	GCNNNNNNNGC	3 cut(s)	169, 362, 485
NcoI	CCATGG	1 cut(s)	1159
NdeII	GATC	5 cut(s)	105, 112, 509, 898, 1054
NlaIII	CATG	6 cut(s)	485, 533, 553, 616, 731, 1163
NlaIV	GGNNCC	2 cut(s)	1056, 1150
NmuCI	GTSAC	2 cut(s)	690, 1030
NsiI	ATGCAT	1 cut(s)	358
PagI	TCATGA	2 cut(s)	481, 549
PciSI	GCTCTTC	1 cut(s)	270
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PctI	GAATGC	1 cut(s)	625
PflMI	CCANNNNNTGG	1 cut(s)	387
PkrI	GCNGC	3 cut(s)	282, 928, 1042
PleI	GAGTC	1 cut(s)	1064
PmaCI	CACGTG	1 cut(s)	45
PmlI	CACGTG	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	1064
Ppu21I	YACGTR	1 cut(s)	45
PshBI	ATTAAT	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	645
PspCI	CACGTG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	2 cut(s)	1056, 1150
PspPI	GGNCC	2 cut(s)	194, 378
PstNI	CAGNNNCTG	1 cut(s)	387
PsuI	RGATCY	3 cut(s)	112, 898, 1054
RsaI	GTAC	2 cut(s)	324, 1213
RsaNI	GTAC	2 cut(s)	323, 1212
RseI	CAYNNNNRTG	1 cut(s)	410
SacI	GAGCTC	1 cut(s)	146
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	4 cut(s)	266, 294, 428, 629
SatI	GCNGC	3 cut(s)	281, 927, 1041
Sau3AI	GATC	5 cut(s)	105, 112, 509, 898, 1054
Sau96I	GGNCC	2 cut(s)	194, 378
SchI	GAGTC	1 cut(s)	1064
ScrFI	CCNGG	1 cut(s)	647
SduI	GDGCHC	1 cut(s)	146
SfaNI	GCATC	6 cut(s)	102, 343, 365, 379, 993, 1111
SinI	GGWCC	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	1072
SmoI	CTYRAG	1 cut(s)	1072
Sse9I	AATT	6 cut(s)	308, 501, 514, 685, 788, 1176
SsiI	CCGC	2 cut(s)	224, 1189
SspMI	CTAG	3 cut(s)	558, 758, 1209
SstI	GAGCTC	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	645
StyI	CCWWGG	3 cut(s)	757, 1008, 1159
TaaI	ACNGT	2 cut(s)	347, 1148
TaiI	ACGT	2 cut(s)	47, 812
TaqI	TCGA	1 cut(s)	512
TasI	AATT	6 cut(s)	308, 501, 514, 685, 788, 1176
Tru1I	TTAA	4 cut(s)	266, 294, 428, 629
Tru9I	TTAA	4 cut(s)	266, 294, 428, 629
TscAI	CASTG	1 cut(s)	1042
TseFI	GTSAC	2 cut(s)	690, 1030
TseI	GCWGC	3 cut(s)	280, 926, 1040
Tsp45I	GTSAC	2 cut(s)	690, 1030
TspDTI	ATGAA	2 cut(s)	498, 998
TspGWI	ACGGA	1 cut(s)	881
TspRI	CASTG	1 cut(s)	1042
Van91I	CCANNNNNTGG	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	194
VspI	ATTAAT	1 cut(s)	294
XapI	RAATTY	2 cut(s)	501, 788
XcmI	CCANNNNNNNNNTGG	1 cut(s)	889
XmaJI	CCTAGG	1 cut(s)	757
XmiI	GTMKAC	2 cut(s)	863, 1068
XspI	CTAG	3 cut(s)	558, 758, 1209
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.