Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006516

Physical Location & Seq

Genomic Coordinates Reverse (-)

22105863 .. 22111604

Gene Structure 5742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1179500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAGTGCGAGAATAAAGAAATCCCCGTCGAATGGCTCTGAGAAGAAATTATCATGTGAAGAGCAGCAGGCAAAGATTAACGAAGTGAAAAAGCTGATAGGACCATTGCCCGATAAGTTGTCCATCTATTGTTCGGATGCATGCATCTCAAGGTATCTAAGGGCGAGAAATTGGAATGTCAAGAAGGCAACTAAAATGTTAAAGGCTACCTTAAAGTGGAGGTCAGAATACAAACCGGAGGAGATTCGTTGGGAAGAGATAGCTCGTGAAGCAGAAACAGGGAAGATTTACAGAACGAATTATTTCGACAAGCATGGGAGACCAGTTCTCGTCATGAGACCACGTTGTCAGAACTCAAAGTCAACGAAGGGCCAGATTAAATATTTGGTATATTGCATGGAGAACGCTGTTTTAAATCTTCCTCCAGGTCAGGAGCAGATGGTTTGGATGATAGACTTCGAAGGTTTCAATTTGTCAAATATTTCTGTGAAGGTGACACGGGAAACTGCACATGTTTTACAAGACCGTTATCCAGAACACCTAGGACTTGCAATACTGTACAATCCACCCAAGTTTTTTGAACCATTCTTTTCGATGGTAAAGCCTTTTCTAGAGCCAAAGACTTACAACAAAGGGAAGTTTGTTTACTCGGATGACGACAACGCCAAGAAGATAATGGAGGATCTGTTTGATATGGATAAACTGGAGGCTGCATTCGGGGGAAACGATACTTCTGGTTTTGATATAAATAAATATGCCGAAAGGATGAAAGAGGATGACAAGAAGATGTCCACAATTTGGACAAGAGGAAACCCTTCTTTGGCGGCCTCAGAACCTGGTGTTACCAGTGCTGCTCTTTCATTAGATTCTCTCAAGTTAGACTCAGATTCTGATGCTTCTGATGACGAGAAAACAGATATCTCTTCATCCCATGGGATAGAACCGGAAGTCTCAGACAATGATGAGACGGTGGCTGCTAGTACCGGAAATGCTACCGAAGGTGTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

337

Amino Acids

38.06

Weight (kDa)

6.07

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	44 - 68	3.8e-09	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	92 - 241	1.1e-33	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	106 - 218	5.2e-08	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08690 AT4G08690 AT4G08690
fragaria_vesca	FvH4_5g37870 FvH4_5g37870 FvH4_5g37870
malus_domestica	MD08G1179500.v1.1 MD15G1364800.v1.1
prunus_persica	Prupe.1G512800_v2.0.a1
pyrus_communis	pycom08g15370 pycom15g32720
rosa_chinensis	RchiOBHm_Chr7g0239851
rosa_laevigata	RLG00000000725
rosa_multiflora	Rmu_co8357749.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220760
rosa_rugosa	Rorug07G0330100 Rorug07G0330200 Rorug07G0330300 Rorug07G0330400 Rorug07G0330500 Rorug07G0330500
rosa_samantha	Rh7AG484000 Rh7BG457100 Rh7CG501500 Rh7DG469700
rosa_wichuraiana	Rw7G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	345
AccB7I	CCANNNNNTGG	1 cut(s)	798
AciI	CCGC	1 cut(s)	824
AclWI	GGATC	1 cut(s)	690
AfaI	GTAC	3 cut(s)	560, 982, 1005
AfiI	CCNNNNNNNGG	4 cut(s)	32, 216, 798, 820
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	2 cut(s)	469, 581
AjnI	CCWGG	2 cut(s)	424, 835
AluBI	AGCT	2 cut(s)	94, 263
AluI	AGCT	2 cut(s)	94, 263
Alw26I	GTCTC	4 cut(s)	313, 331, 955, 959
AlwI	GGATC	1 cut(s)	690
AlwNI	CAGNNNCTG	2 cut(s)	836, 890
AoxI	GGCC	2 cut(s)	370, 825
ApeKI	GCWGC	4 cut(s)	64, 710, 851, 974
Asp700I	GAANNNNTTC	2 cut(s)	302, 814
AspA2I	CCTAGG	1 cut(s)	541
AspS9I	GGNCC	2 cut(s)	101, 370
AsuHPI	GGTGA	1 cut(s)	505
AsuII	TTCGAA	1 cut(s)	459
AvaII	GGWCC	1 cut(s)	101
AvrII	CCTAGG	1 cut(s)	541
BarI	GAAGNNNNNNTAC	2 cut(s)	629, 661
BauI	CACGAG	1 cut(s)	264
BbvI	GCAGC	4 cut(s)	76, 697, 838, 961
BccI	CCATC	3 cut(s)	131, 433, 589
BciT130I	CCWGG	2 cut(s)	426, 837
BcoDI	GTCTC	4 cut(s)	313, 331, 955, 959
BfaI	CTAG	3 cut(s)	542, 611, 978
BisI	GCNGC	5 cut(s)	65, 711, 825, 852, 975
BlnI	CCTAGG	1 cut(s)	541
BlsI	GCNGC	5 cut(s)	66, 712, 826, 853, 976
Bme1390I	CCNGG	2 cut(s)	426, 837
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	101, 370
BmrFI	CCNGG	2 cut(s)	426, 837
BmsI	GCATC	3 cut(s)	127, 153, 883
BpmI	CTGGAG	2 cut(s)	408, 725
Bpu14I	TTCGAA	1 cut(s)	459
BpuEI	CTTGAG	2 cut(s)	133, 857
BsaI	GGTCTC	2 cut(s)	313, 331
BsaJI	CCNNGG	2 cut(s)	541, 931
BsaWI	WCCGGW	3 cut(s)	235, 943, 983
BsaXI	ACNNNNNCTCC	2 cut(s)	671, 701
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 216, 798, 820
Bse1I	ACTGG	3 cut(s)	323, 708, 846
Bse3DI	GCAATG	1 cut(s)	104
BseBI	CCWGG	2 cut(s)	426, 837
BseDI	CCNNGG	2 cut(s)	541, 931
BseGI	GGATG	6 cut(s)	142, 453, 658, 771, 781, 926
BseLI	CCNNNNNNNGG	4 cut(s)	32, 216, 798, 820
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	4 cut(s)	30, 843, 897, 966
BseNI	ACTGG	3 cut(s)	323, 708, 846
BseRI	GAGGAG	1 cut(s)	254
BseXI	GCAGC	4 cut(s)	76, 697, 838, 961
BsgI	GTGCAG	1 cut(s)	492
BshFI	GGCC	2 cut(s)	372, 827
BsiSI	CCGG	3 cut(s)	236, 944, 984
BslI	CCNNNNNNNGG	4 cut(s)	32, 216, 798, 820
BsmAI	GTCTC	4 cut(s)	313, 331, 955, 959
BsmBI	CGTCTC	1 cut(s)	959
BsmI	GAATGC	1 cut(s)	713
BsnI	GGCC	2 cut(s)	372, 827
Bso31I	GGTCTC	2 cut(s)	313, 331
Bsp119I	TTCGAA	1 cut(s)	459
Bsp1407I	TGTACA	2 cut(s)	558, 1003
Bsp143I	GATC	1 cut(s)	682
Bsp19I	CCATGG	1 cut(s)	931
BspACI	CCGC	1 cut(s)	824
BspANI	GGCC	2 cut(s)	372, 827
BspCNI	CTCAG	4 cut(s)	31, 842, 896, 965
BspHI	TCATGA	1 cut(s)	333
BspPI	GGATC	1 cut(s)	690
BspQI	GCTCTTC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	459
BspTNI	GGTCTC	2 cut(s)	313, 331
BsrDI	GCAATG	1 cut(s)	104
BsrGI	TGTACA	2 cut(s)	558, 1003
BsrI	ACTGG	3 cut(s)	323, 708, 846
BssECI	CCNNGG	2 cut(s)	541, 931
BssMI	GATC	1 cut(s)	682
BssSI	CACGAG	1 cut(s)	264
BssT1I	CCWWGG	2 cut(s)	541, 931
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	2 cut(s)	426, 837
Bst4CI	ACNGT	3 cut(s)	527, 558, 970
Bst6I	CTCTTC	3 cut(s)	54, 249, 928
BstAUI	TGTACA	2 cut(s)	558, 1003
BstBI	TTCGAA	1 cut(s)	459
BstC8I	GCNNGC	2 cut(s)	69, 142
BstDEI	CTNAG	5 cut(s)	39, 158, 829, 883, 952
BstDSI	CCRYGG	1 cut(s)	931
BstF5I	GGATG	6 cut(s)	142, 453, 658, 771, 781, 926
BstKTI	GATC	1 cut(s)	685
BstMAI	GTCTC	4 cut(s)	313, 331, 955, 959
BstMBI	GATC	1 cut(s)	682
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	2 cut(s)	426, 837
BstNSI	RCATGY	2 cut(s)	144, 515
BstSCI	CCNGG	2 cut(s)	424, 835
BstV1I	GCAGC	4 cut(s)	76, 697, 838, 961
BstX2I	RGATCY	1 cut(s)	682
BstYI	RGATCY	1 cut(s)	682
BsuRI	GGCC	2 cut(s)	372, 827
BtgI	CCRYGG	1 cut(s)	931
BtsCI	GGATG	6 cut(s)	142, 453, 658, 771, 781, 926
BtsIMutI	CAGTG	1 cut(s)	853
Cac8I	GCNNGC	2 cut(s)	69, 142
CaiI	CAGNNNCTG	2 cut(s)	836, 890
CciI	TCATGA	1 cut(s)	333
Cfr13I	GGNCC	2 cut(s)	101, 370
CsiI	ACCWGGT	1 cut(s)	835
Csp6I	GTAC	3 cut(s)	559, 981, 1004
CviAII	CATG	7 cut(s)	54, 141, 314, 334, 397, 512, 932
CviQI	GTAC	3 cut(s)	559, 981, 1004
DdeI	CTNAG	5 cut(s)	39, 158, 829, 883, 952
DpnI	GATC	1 cut(s)	684
DpnII	GATC	1 cut(s)	682
DraI	TTTAAA	1 cut(s)	414
DrdI	GACNNNNNNGTC	1 cut(s)	345
DseDI	GACNNNNNNGTC	1 cut(s)	345
Eam1104I	CTCTTC	3 cut(s)	54, 249, 928
EarI	CTCTTC	3 cut(s)	54, 249, 928
Eco130I	CCWWGG	2 cut(s)	541, 931
Eco31I	GGTCTC	2 cut(s)	313, 331
Eco32I	GATATC	1 cut(s)	919
Eco47I	GGWCC	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	424, 835
EcoRV	GATATC	1 cut(s)	919
EcoT14I	CCWWGG	2 cut(s)	541, 931
EcoT22I	ATGCAT	2 cut(s)	142, 146
ErhI	CCWWGG	2 cut(s)	541, 931
Esp3I	CGTCTC	1 cut(s)	959
FaeI	CATG	7 cut(s)	57, 144, 317, 337, 400, 515, 935
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	7 cut(s)	53, 140, 313, 333, 396, 511, 931
Fnu4HI	GCNGC	5 cut(s)	65, 711, 825, 852, 975
FokI	GGATG	6 cut(s)	149, 460, 665, 778, 788, 913
Fsp4HI	GCNGC	5 cut(s)	65, 711, 825, 852, 975
FspBI	CTAG	3 cut(s)	542, 611, 978
GluI	GCNGC	5 cut(s)	65, 711, 825, 852, 975
GsuI	CTGGAG	2 cut(s)	408, 725
HaeIII	GGCC	2 cut(s)	372, 827
HapII	CCGG	3 cut(s)	236, 944, 984
Hin1II	CATG	7 cut(s)	57, 144, 317, 337, 400, 515, 935
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HinfI	GANTC	4 cut(s)	244, 866, 881, 887
HpaII	CCGG	3 cut(s)	236, 944, 984
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	4 cut(s)	363, 646, 792, 1004
Hpy188III	TCNNGA	6 cut(s)	181, 266, 334, 431, 533, 611
Hpy8I	GTNNAC	4 cut(s)	363, 646, 792, 1004
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	6 cut(s)	178, 361, 455, 484, 825, 992
HpyCH4III	ACNGT	3 cut(s)	527, 558, 970
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	6 cut(s)	140, 144, 396, 509, 551, 713
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	5 cut(s)	39, 158, 829, 883, 952
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	7 cut(s)	57, 144, 317, 337, 400, 515, 935
Kzo9I	GATC	1 cut(s)	682
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	4 cut(s)	76, 697, 838, 961
LweI	GCATC	3 cut(s)	127, 153, 883
MabI	ACCWGGT	1 cut(s)	835
MaeI	CTAG	3 cut(s)	542, 611, 978
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	2 cut(s)	493, 841
MalI	GATC	1 cut(s)	684
MboI	GATC	1 cut(s)	682
MboII	GAAGA	8 cut(s)	55, 71, 266, 295, 410, 682, 796, 915
MflI	RGATCY	1 cut(s)	682
MluCI	AATT	5 cut(s)	47, 169, 298, 469, 795
MlyI	GAGTC	1 cut(s)	875
MnlI	CCTC	8 cut(s)	213, 232, 432, 673, 700, 766, 800, 838
Mph1103I	ATGCAT	2 cut(s)	142, 146
MroXI	GAANNNNTTC	2 cut(s)	302, 814
MseI	TTAA	5 cut(s)	78, 200, 212, 378, 413
MspI	CCGG	3 cut(s)	236, 944, 984
MspR9I	CCNGG	2 cut(s)	426, 837
Mva1269I	GAATGC	1 cut(s)	713
MvaI	CCWGG	2 cut(s)	426, 837
MwoI	GCNNNNNNNGC	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	931
NdeII	GATC	1 cut(s)	682
NlaIII	CATG	7 cut(s)	57, 144, 317, 337, 400, 515, 935
NmuCI	GTSAC	1 cut(s)	493
NsiI	ATGCAT	2 cut(s)	142, 146
NspI	RCATGY	2 cut(s)	144, 515
NspV	TTCGAA	1 cut(s)	459
PaeI	GCATGC	1 cut(s)	144
PagI	TCATGA	1 cut(s)	333
PciI	ACATGT	1 cut(s)	511
PciSI	GCTCTTC	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	723
PctI	GAATGC	1 cut(s)	713
PdmI	GAANNNNTTC	2 cut(s)	302, 814
PfeI	GAWTC	3 cut(s)	244, 866, 887
PflMI	CCANNNNNTGG	1 cut(s)	798
PkrI	GCNGC	5 cut(s)	66, 712, 826, 853, 976
PleI	GAGTC	1 cut(s)	875
PpsI	GAGTC	1 cut(s)	875
PscI	ACATGT	1 cut(s)	511
Psp6I	CCWGG	2 cut(s)	424, 835
PspGI	CCWGG	2 cut(s)	424, 835
PspPI	GGNCC	2 cut(s)	101, 370
PstNI	CAGNNNCTG	2 cut(s)	836, 890
PsuI	RGATCY	1 cut(s)	682
RsaI	GTAC	3 cut(s)	560, 982, 1005
RsaNI	GTAC	3 cut(s)	559, 981, 1004
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	5 cut(s)	78, 200, 212, 378, 413
SatI	GCNGC	5 cut(s)	65, 711, 825, 852, 975
Sau3AI	GATC	1 cut(s)	682
Sau96I	GGNCC	2 cut(s)	101, 370
SchI	GAGTC	1 cut(s)	875
ScrFI	CCNGG	2 cut(s)	426, 837
SexAI	ACCWGGT	1 cut(s)	835
SfaNI	GCATC	3 cut(s)	127, 153, 883
SfuI	TTCGAA	1 cut(s)	459
SinI	GGWCC	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	148, 872
SmoI	CTYRAG	2 cut(s)	148, 872
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	5 cut(s)	47, 169, 298, 469, 795
SsiI	CCGC	1 cut(s)	824
SspI	AATATT	2 cut(s)	383, 481
SspMI	CTAG	3 cut(s)	542, 611, 978
StyD4I	CCNGG	2 cut(s)	424, 835
StyI	CCWWGG	2 cut(s)	541, 931
TaaI	ACNGT	3 cut(s)	527, 558, 970
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	4 cut(s)	29, 306, 459, 593
TasI	AATT	5 cut(s)	47, 169, 298, 469, 795
TatI	WGTACW	2 cut(s)	558, 1003
TauI	GCSGC	1 cut(s)	827
TfiI	GAWTC	3 cut(s)	244, 866, 887
Tru1I	TTAA	5 cut(s)	78, 200, 212, 378, 413
Tru9I	TTAA	5 cut(s)	78, 200, 212, 378, 413
TscAI	CASTG	1 cut(s)	853
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	4 cut(s)	64, 710, 851, 974
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	3 cut(s)	782, 849, 915
TspRI	CASTG	1 cut(s)	853
Van91I	CCANNNNNTGG	1 cut(s)	798
VpaK11BI	GGWCC	1 cut(s)	101
XbaI	TCTAGA	1 cut(s)	610
XceI	RCATGY	2 cut(s)	144, 515
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
XmaJI	CCTAGG	1 cut(s)	541
XmnI	GAANNNNTTC	2 cut(s)	302, 814
XspI	CTAG	3 cut(s)	542, 611, 978
Zsp2I	ATGCAT	2 cut(s)	142, 146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.