Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006516

Physical Location & Seq

Genomic Coordinates Reverse (-)

44188535 .. 44193423

Gene Structure 4889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1364800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAAGAAATCCCCTTCAAATGGTTCTGAGAAGATATTATCATGTGAAGAGCAGCAGGCAAAGATTAACGAAGTGAAAAAGCTGATAGGAACATTGCCTGATAAGTTGTCCATCTATTGTTCTGATGCCTCCATCTCAAGGTATCTAAGGGCGAGAAACTGGAATGTCAAGAAGGCAACTAAAATGTTAAAAGATACCTTAAGGTGGAGGTCAGAATACAAACCAGAAGAGATTCCTTGGAAAGAGGTAGCTCGTGAAGCGGAAACAGGGAAGATTTACAGATCCAATTATTTTGACAAGCAAGGGAGACCAGTTCTCGTTATGAGACCACGTTGTCAGAACTCAAAGTCAACAAAAGGACAGATTAAATATTTGGTATATTGCATGGAGAATGCTGTTTTAAATCTTCCGCCAGGTCAGGAACAGATGGTTTGGATGATAGACTTTGAAGGTTTCAATATGTCACATATTTCAGTGAAGGTGACACGGGAAACTGCACATGTTTTACAAAACCGTTATCCAGAACGCCTAGGTCTTGCAATACTGTACAATCCACCCAAGTTTTTTGAACCATTCTTTTCGATGGTAAAGCCTTTTCTAGAGCCAAAGACTTGCAACAAAGTCAGGTTTGTTTACTCGGATGATGTTAACACCAAGAAGATAATGGAGGATCTGTTTGATATGAATAAACTGGAGGCTGTATTCGGGGGAAACGATACGTCTGGTTTTGATATAAATAAATATGCCGAAAGGATGAAGGAGGATGACAAGAAGATGCCCACAATGTGGACGAGAGGAAACCCTTCTTTGGCTGCTTCCGAACCTGCCGTTACCGGTGCTGCTCTTTCATTGGATTCTCTCAAGTTAGAACCAGATTCCGATGCTTCTGATAATGAGAAAACAGACGGCTCTTCATCCCAGGGGATAGAACCAGAAGTTGCCTCAGACCACGATGAGCCGGTGGCTGCTAGTACTGGAAATGCTACCCAAGGTGTACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

334

Amino Acids

37.75

Weight (kDa)

7.57

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	41 - 65	8.4e-08	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	88 - 237	4.8e-35	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	102 - 213	3.5e-09	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006516)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08690 AT4G08690 AT4G08690
fragaria_vesca	FvH4_5g37870 FvH4_5g37870 FvH4_5g37870
malus_domestica	MD08G1179500.v1.1 MD15G1364800.v1.1
prunus_persica	Prupe.1G512800_v2.0.a1
pyrus_communis	pycom08g15370 pycom15g32720
rosa_chinensis	RchiOBHm_Chr7g0239851
rosa_laevigata	RLG00000000725
rosa_multiflora	Rmu_co8357749.1_g000001
rosa_roxburghii	Rroxscaffold_3G00220760
rosa_rugosa	Rorug07G0330100 Rorug07G0330200 Rorug07G0330300 Rorug07G0330400 Rorug07G0330500 Rorug07G0330500
rosa_samantha	Rh7AG484000 Rh7BG457100 Rh7CG501500 Rh7DG469700
rosa_wichuraiana	Rw7G040600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	333
Acc36I	ACCTGC	1 cut(s)	832
AccB7I	CCANNNNNTGG	1 cut(s)	786
AciI	CCGC	2 cut(s)	260, 410
AclWI	GGATC	2 cut(s)	276, 678
AdeI	CACNNNGTG	1 cut(s)	786
AfaI	GTAC	3 cut(s)	548, 973, 996
AfiI	CCNNNNNNNGG	5 cut(s)	20, 138, 204, 786, 808
AflII	CTTAAG	1 cut(s)	199
AflIII	ACRYGT	1 cut(s)	499
AgeI	ACCGGT	1 cut(s)	833
AgsI	TTSAA	4 cut(s)	18, 449, 457, 569
AjnI	CCWGG	2 cut(s)	412, 918
AluBI	AGCT	2 cut(s)	82, 251
AluI	AGCT	2 cut(s)	82, 251
Alw26I	GTCTC	2 cut(s)	301, 319
AlwI	GGATC	2 cut(s)	276, 678
ApeKI	GCWGC	4 cut(s)	52, 812, 839, 965
AsiGI	ACCGGT	1 cut(s)	833
Asp700I	GAANNNNTTC	2 cut(s)	231, 802
AspA2I	CCTAGG	1 cut(s)	529
AsuHPI	GGTGA	1 cut(s)	493
AvrII	CCTAGG	1 cut(s)	529
BauI	CACGAG	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	64, 799, 826, 952
BccI	CCATC	4 cut(s)	119, 140, 421, 577
BceAI	ACGGC	2 cut(s)	812, 922
BciT130I	CCWGG	2 cut(s)	414, 920
BcoDI	GTCTC	2 cut(s)	301, 319
BfaI	CTAG	3 cut(s)	530, 599, 969
BfrI	CTTAAG	1 cut(s)	199
BfuAI	ACCTGC	1 cut(s)	832
BisI	GCNGC	4 cut(s)	53, 813, 840, 966
BlnI	CCTAGG	1 cut(s)	529
BlsI	GCNGC	4 cut(s)	54, 814, 841, 967
BmcAI	AGTACT	1 cut(s)	973
Bme1390I	CCNGG	2 cut(s)	414, 920
BmrFI	CCNGG	2 cut(s)	414, 920
BmsI	GCATC	3 cut(s)	115, 765, 871
BpmI	CTGGAG	1 cut(s)	713
BpuEI	CTTGAG	2 cut(s)	121, 845
BsaI	GGTCTC	2 cut(s)	301, 319
BsaJI	CCNNGG	5 cut(s)	236, 529, 918, 919, 988
BsaWI	WCCGGW	1 cut(s)	833
BsaXI	ACNNNNNCTCC	2 cut(s)	659, 689
Bsc4I	CCNNNNNNNGG	5 cut(s)	20, 138, 204, 786, 808
Bse118I	RCCGGY	2 cut(s)	833, 958
Bse1I	ACTGG	4 cut(s)	164, 311, 696, 979
Bse3DI	GCAATG	1 cut(s)	92
BseBI	CCWGG	2 cut(s)	414, 920
BseDI	CCNNGG	5 cut(s)	236, 529, 918, 919, 988
BseGI	GGATG	5 cut(s)	441, 646, 759, 769, 914
BseLI	CCNNNNNNNGG	5 cut(s)	20, 138, 204, 786, 808
BseMI	GCAATG	1 cut(s)	92
BseMII	CTCAG	2 cut(s)	18, 957
BseNI	ACTGG	4 cut(s)	164, 311, 696, 979
BseXI	GCAGC	4 cut(s)	64, 799, 826, 952
BsgI	GTGCAG	1 cut(s)	480
BshTI	ACCGGT	1 cut(s)	833
BsiSI	CCGG	2 cut(s)	834, 959
BslI	CCNNNNNNNGG	5 cut(s)	20, 138, 204, 786, 808
BsmAI	GTCTC	2 cut(s)	301, 319
BsmI	GAATGC	1 cut(s)	397
Bso31I	GGTCTC	2 cut(s)	301, 319
Bsp1407I	TGTACA	2 cut(s)	546, 994
Bsp143I	GATC	2 cut(s)	281, 670
BspACI	CCGC	2 cut(s)	260, 410
BspCNI	CTCAG	2 cut(s)	19, 956
BspMI	ACCTGC	1 cut(s)	832
BspPI	GGATC	2 cut(s)	276, 678
BspQI	GCTCTTC	2 cut(s)	42, 916
BspTI	CTTAAG	1 cut(s)	199
BspTNI	GGTCTC	2 cut(s)	301, 319
BsrDI	GCAATG	1 cut(s)	92
BsrFI	RCCGGY	2 cut(s)	833, 958
BsrGI	TGTACA	2 cut(s)	546, 994
BsrI	ACTGG	4 cut(s)	164, 311, 696, 979
BssAI	RCCGGY	2 cut(s)	833, 958
BssECI	CCNNGG	5 cut(s)	236, 529, 918, 919, 988
BssMI	GATC	2 cut(s)	281, 670
BssSI	CACGAG	1 cut(s)	252
BssT1I	CCWWGG	3 cut(s)	236, 529, 988
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	414, 920
Bst4CI	ACNGT	2 cut(s)	515, 546
Bst6I	CTCTTC	3 cut(s)	42, 222, 916
BstAFI	CTTAAG	1 cut(s)	199
BstAUI	TGTACA	2 cut(s)	546, 994
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	3 cut(s)	27, 146, 943
BstF5I	GGATG	5 cut(s)	441, 646, 759, 769, 914
BstKTI	GATC	2 cut(s)	284, 673
BstMAI	GTCTC	2 cut(s)	301, 319
BstMBI	GATC	2 cut(s)	281, 670
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BstNI	CCWGG	2 cut(s)	414, 920
BstNSI	RCATGY	1 cut(s)	503
BstSCI	CCNGG	2 cut(s)	412, 918
BstV1I	GCAGC	4 cut(s)	64, 799, 826, 952
BstX2I	RGATCY	2 cut(s)	281, 670
BstYI	RGATCY	2 cut(s)	281, 670
BtsCI	GGATG	5 cut(s)	441, 646, 759, 769, 914
BtsIMutI	CAGTG	1 cut(s)	480
BveI	ACCTGC	1 cut(s)	832
Cac8I	GCNNGC	1 cut(s)	57
Cfr10I	RCCGGY	2 cut(s)	833, 958
Csp6I	GTAC	3 cut(s)	547, 972, 995
CspAI	ACCGGT	1 cut(s)	833
CviAII	CATG	3 cut(s)	42, 385, 500
CviJI	RGCY	9 cut(s)	82, 251, 592, 604, 698, 812, 909, 958, 965
CviKI_1	RGCY	9 cut(s)	82, 251, 592, 604, 698, 812, 909, 958, 965
CviQI	GTAC	3 cut(s)	547, 972, 995
DdeI	CTNAG	3 cut(s)	27, 146, 943
DpnI	GATC	2 cut(s)	283, 672
DpnII	GATC	2 cut(s)	281, 670
DraI	TTTAAA	1 cut(s)	402
DraIII	CACNNNGTG	1 cut(s)	786
DrdI	GACNNNNNNGTC	1 cut(s)	333
DseDI	GACNNNNNNGTC	1 cut(s)	333
Eam1104I	CTCTTC	3 cut(s)	42, 222, 916
EarI	CTCTTC	3 cut(s)	42, 222, 916
EciI	GGCGGA	1 cut(s)	399
Eco130I	CCWWGG	3 cut(s)	236, 529, 988
Eco31I	GGTCTC	2 cut(s)	301, 319
EcoRII	CCWGG	2 cut(s)	412, 918
EcoT14I	CCWWGG	3 cut(s)	236, 529, 988
ErhI	CCWWGG	3 cut(s)	236, 529, 988
FaeI	CATG	3 cut(s)	45, 388, 503
FatI	CATG	3 cut(s)	41, 384, 499
Fnu4HI	GCNGC	4 cut(s)	53, 813, 840, 966
FokI	GGATG	5 cut(s)	448, 653, 766, 776, 901
Fsp4HI	GCNGC	4 cut(s)	53, 813, 840, 966
FspBI	CTAG	3 cut(s)	530, 599, 969
GluI	GCNGC	4 cut(s)	53, 813, 840, 966
GsuI	CTGGAG	1 cut(s)	713
HapII	CCGG	2 cut(s)	834, 959
Hin1II	CATG	3 cut(s)	45, 388, 503
HincII	GTYRAC	2 cut(s)	351, 649
HindII	GTYRAC	2 cut(s)	351, 649
HinfI	GANTC	3 cut(s)	232, 854, 875
HpaI	GTTAAC	1 cut(s)	649
HpaII	CCGG	2 cut(s)	834, 959
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	5 cut(s)	351, 634, 649, 789, 995
Hpy188I	TCNGA	9 cut(s)	28, 124, 214, 339, 640, 820, 880, 889, 946
Hpy188III	TCNNGA	5 cut(s)	169, 254, 419, 521, 599
Hpy8I	GTNNAC	5 cut(s)	351, 634, 649, 789, 995
HpyAV	CCTTC	6 cut(s)	24, 166, 443, 472, 751, 813
HpyCH4III	ACNGT	2 cut(s)	515, 546
HpyCH4IV	ACGT	2 cut(s)	331, 719
HpyCH4V	TGCA	4 cut(s)	384, 497, 539, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpyF3I	CTNAG	3 cut(s)	27, 146, 943
HpySE526I	ACGT	2 cut(s)	331, 719
Hsp92II	CATG	3 cut(s)	45, 388, 503
KspAI	GTTAAC	1 cut(s)	649
Kzo9I	GATC	2 cut(s)	281, 670
LguI	GCTCTTC	2 cut(s)	42, 916
Lsp1109I	GCAGC	4 cut(s)	64, 799, 826, 952
LweI	GCATC	3 cut(s)	115, 765, 871
MaeI	CTAG	3 cut(s)	530, 599, 969
MaeII	ACGT	2 cut(s)	331, 719
MaeIII	GTNAC	3 cut(s)	462, 481, 829
MalI	GATC	2 cut(s)	283, 672
MboI	GATC	2 cut(s)	281, 670
MboII	GAAGA	9 cut(s)	16, 43, 59, 239, 283, 398, 670, 784, 903
MflI	RGATCY	2 cut(s)	281, 670
MluCI	AATT	1 cut(s)	286
MnlI	CCTC	8 cut(s)	139, 201, 238, 661, 688, 754, 788, 952
MroXI	GAANNNNTTC	2 cut(s)	231, 802
MseI	TTAA	7 cut(s)	66, 188, 200, 366, 401, 648, 1000
MspCI	CTTAAG	1 cut(s)	199
MspI	CCGG	2 cut(s)	834, 959
MspR9I	CCNGG	2 cut(s)	414, 920
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	2 cut(s)	414, 920
MwoI	GCNNNNNNNGC	1 cut(s)	257
NdeII	GATC	2 cut(s)	281, 670
NlaIII	CATG	3 cut(s)	45, 388, 503
NmuCI	GTSAC	2 cut(s)	462, 481
NspI	RCATGY	1 cut(s)	503
PasI	CCCWGGG	1 cut(s)	919
PciI	ACATGT	1 cut(s)	499
PciSI	GCTCTTC	2 cut(s)	42, 916
PcsI	WCGNNNNNNNCGW	1 cut(s)	711
PctI	GAATGC	1 cut(s)	397
PdmI	GAANNNNTTC	2 cut(s)	231, 802
PfeI	GAWTC	3 cut(s)	232, 854, 875
PflMI	CCANNNNNTGG	1 cut(s)	786
PinAI	ACCGGT	1 cut(s)	833
PkrI	GCNGC	4 cut(s)	54, 814, 841, 967
PscI	ACATGT	1 cut(s)	499
Psp6I	CCWGG	2 cut(s)	412, 918
PspGI	CCWGG	2 cut(s)	412, 918
PsuI	RGATCY	2 cut(s)	281, 670
RsaI	GTAC	3 cut(s)	548, 973, 996
RsaNI	GTAC	3 cut(s)	547, 972, 995
SapI	GCTCTTC	2 cut(s)	42, 916
SaqAI	TTAA	7 cut(s)	66, 188, 200, 366, 401, 648, 1000
SatI	GCNGC	4 cut(s)	53, 813, 840, 966
Sau3AI	GATC	2 cut(s)	281, 670
ScaI	AGTACT	1 cut(s)	973
ScrFI	CCNGG	2 cut(s)	414, 920
SfaNI	GCATC	3 cut(s)	115, 765, 871
SmlI	CTYRAG	3 cut(s)	136, 199, 860
SmoI	CTYRAG	3 cut(s)	136, 199, 860
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	2 cut(s)	260, 410
SspI	AATATT	1 cut(s)	371
SspMI	CTAG	3 cut(s)	530, 599, 969
StyD4I	CCNGG	2 cut(s)	412, 918
StyI	CCWWGG	3 cut(s)	236, 529, 988
TaaI	ACNGT	2 cut(s)	515, 546
TaiI	ACGT	2 cut(s)	334, 722
TaqI	TCGA	1 cut(s)	581
TasI	AATT	1 cut(s)	286
TatI	WGTACW	3 cut(s)	546, 971, 994
TfiI	GAWTC	3 cut(s)	232, 854, 875
Tru1I	TTAA	7 cut(s)	66, 188, 200, 366, 401, 648, 1000
Tru9I	TTAA	7 cut(s)	66, 188, 200, 366, 401, 648, 1000
TscAI	CASTG	1 cut(s)	480
TseFI	GTSAC	2 cut(s)	462, 481
TseI	GCWGC	4 cut(s)	52, 812, 839, 965
Tsp45I	GTSAC	2 cut(s)	462, 481
TspDTI	ATGAA	5 cut(s)	17, 698, 770, 837, 903
TspRI	CASTG	1 cut(s)	480
Van91I	CCANNNNNTGG	1 cut(s)	786
Vha464I	CTTAAG	1 cut(s)	199
XbaI	TCTAGA	1 cut(s)	598
XceI	RCATGY	1 cut(s)	503
XcmI	CCANNNNNNNNNTGG	1 cut(s)	661
XmaJI	CCTAGG	1 cut(s)	529
XmnI	GAANNNNTTC	2 cut(s)	231, 802
XspI	CTAG	3 cut(s)	530, 599, 969
ZrmI	AGTACT	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.