Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008629

Physical Location & Seq

Genomic Coordinates Forward (+)

6305320 .. 6307552

Gene Structure 2233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGATCGTTCTTTGAATCTCCTCGATTTAGCCTTAGGGTTCGATGAGCAGCTAGCTATTCCATCGCCACTAAATGGAAAAGTAATACTAATAGAAGACTGTGTAGAGACGAGTGGTTCCTTTGTACTTCACCAGCTAATGAAACGTGTTCTCTCCTCTAACTCCTCCGACGCACTTATCTTTCTCGCTTTTGCTCGCCCTTTCTCTCATTATGATCGAATCTTGCGTAAACTGGGATGTAATTTAGCTACCCATAAGTCGAATAATCGATTGGTGTTCTTTGACATGCTCATGGTTAAGTGTTCAGATGGGGATCAAATGGAAGACAATGTGAGTGCAGTTGCGAAACTATTTCGGGAGATACAAGAAACCGTTCGAAAGCTACAGAGTGTAACAAGTGGTAACATAACTGTTATGGTGGATGACATGTCTCTGCTGGAAATTGCTACTACCGGCAGCAACTCAGATCACGTATTGGACTTCTTGCATTATTGCCACACATTAAGTTCTGAAAGCAATTGTTCATTGGTCATCCTCAATCATGAAGATATATACGCGAGCATGGAGAGACCTGCATTTTTGCTACAGATGGTATGCCTTGCAGATGTTGTGATAAAGGCAGAGCCTTTAGCCTCTGGTTTAGCAAATGATGTACATGGCCAATTGACTGTTCTGAACAAAGGGATAAGCAACTCAGGTAGAGGAAGCTCGAGGAACAAGTTGCAGAATTTTCAATTCAGGATCAAAGAAAATGGTATCGACTATTTCTATCCTGGTTGCAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0006979 GO:0008150 GO:0008284 GO:0009892 GO:0019222 GO:0031537 GO:0031538 GO:0032991 GO:0033588 GO:0042127 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0065007 GO:0080090 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELP6

Protein Analysis

262

Amino Acids

29.13

Weight (kDa)

5.74

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELP6	PF09807	24 - 249	3.9e-29	Elongation complex protein 6
Elong_Iki1	PF10483	28 - 217	1.6e-06	Elongator subunit Iki1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10090
fragaria_vesca	FvH4_7g20560 FvH4_7g20560 FvH4_7g20560
malus_domestica	MD00G1166800.v1.1 MD01G1114500.v1.1 MD01G1114600.v1.1 MD07G1182600.v1.1
prunus_persica	Prupe.2G221200_v2.0.a1 Prupe.2G221200_v2.0.a1
pyrus_communis	pycom01g14350 pycom04g21470 pycom07g17510
rosa_chinensis	RchiOBHm_Chr1g0364441
rosa_laevigata	RLG00000027479
rosa_roxburghii	Rroxscaffold_4G00291830 Rroxscaffold_4G00292270
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324500 Rh1BG287200 Rh1CG303800 Rh1DG318700
rosa_wichuraiana	Rw1G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	580
AccB7I	CCANNNNNTGG	1 cut(s)	74
AccII	CGCG	1 cut(s)	557
AclWI	GGATC	3 cut(s)	12, 321, 749
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	1 cut(s)	727
AfaI	GTAC	2 cut(s)	126, 654
AfiI	CCNNNNNNNGG	1 cut(s)	74
AflIII	ACRYGT	2 cut(s)	145, 426
AgsI	TTSAA	2 cut(s)	16, 734
AjnI	CCWGG	1 cut(s)	772
AjuI	GAANNNNNNNTTGG	4 cut(s)	254, 286, 654, 686
AluBI	AGCT	7 cut(s)	52, 56, 136, 248, 382, 708, 786
AluI	AGCT	7 cut(s)	52, 56, 136, 248, 382, 708, 786
Alw26I	GTCTC	3 cut(s)	101, 435, 562
AlwI	GGATC	3 cut(s)	12, 321, 749
AlwNI	CAGNNNCTG	1 cut(s)	786
Ama87I	CYCGRG	1 cut(s)	709
AoxI	GGCC	1 cut(s)	658
ApeKI	GCWGC	2 cut(s)	49, 456
ApoI	RAATTY	1 cut(s)	727
Asp700I	GAANNNNTTC	1 cut(s)	372
AsuHPI	GGTGA	1 cut(s)	122
AsuII	TTCGAA	1 cut(s)	376
AsuNHI	GCTAGC	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	709
AxyI	CCTNAGG	1 cut(s)	34
BalI	TGGCCA	1 cut(s)	660
BbsI	GAAGAC	2 cut(s)	102, 330
BbvI	GCAGC	2 cut(s)	61, 468
BccI	CCATC	3 cut(s)	70, 302, 583
BciT130I	CCWGG	1 cut(s)	774
BcoDI	GTCTC	3 cut(s)	101, 435, 562
BfaI	CTAG	1 cut(s)	53
BfmI	CTRYAG	2 cut(s)	383, 584
BfuAI	ACCTGC	1 cut(s)	580
BisI	GCNGC	2 cut(s)	50, 457
BlsI	GCNGC	2 cut(s)	51, 458
Bme1390I	CCNGG	1 cut(s)	774
BmeT110I	CYCGRG	1 cut(s)	709
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	774
BmrI	ACTGGG	1 cut(s)	242
BmtI	GCTAGC	1 cut(s)	56
BmuI	ACTGGG	1 cut(s)	242
BpiI	GAAGAC	2 cut(s)	102, 330
Bpu14I	TTCGAA	1 cut(s)	376
Bsa29I	ATCGAT	1 cut(s)	268
BsaAI	YACGTR	1 cut(s)	472
BsaBI	GATNNNNATC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	562
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	1 cut(s)	237
Bse21I	CCTNAGG	1 cut(s)	34
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	774
BseCI	ATCGAT	1 cut(s)	268
BseGI	GGATG	3 cut(s)	242, 427, 531
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	2 cut(s)	477, 708
BseNI	ACTGG	1 cut(s)	237
BseRI	GAGGAG	3 cut(s)	11, 145, 154
BseXI	GCAGC	2 cut(s)	61, 468
BsgI	GTGCAG	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	557
BshFI	GGCC	1 cut(s)	660
BshVI	ATCGAT	1 cut(s)	268
BsiHKCI	CYCGRG	1 cut(s)	709
BsiSI	CCGG	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	3 cut(s)	101, 435, 562
BsmBI	CGTCTC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	660
Bso31I	GGTCTC	1 cut(s)	562
BsoBI	CYCGRG	1 cut(s)	709
Bsp119I	TTCGAA	1 cut(s)	376
Bsp1407I	TGTACA	1 cut(s)	652
Bsp143I	GATC	5 cut(s)	4, 214, 313, 466, 741
BspANI	GGCC	1 cut(s)	660
BspCNI	CTCAG	2 cut(s)	476, 707
BspDI	ATCGAT	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	557
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	580
BspOI	GCTAGC	1 cut(s)	56
BspPI	GGATC	3 cut(s)	12, 321, 749
BspT104I	TTCGAA	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	562
BsrFI	RCCGGY	1 cut(s)	452
BsrGI	TGTACA	1 cut(s)	652
BsrI	ACTGG	1 cut(s)	237
BssAI	RCCGGY	1 cut(s)	452
BssMI	GATC	5 cut(s)	4, 214, 313, 466, 741
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	4 cut(s)	101, 373, 412, 670
BstAUI	TGTACA	1 cut(s)	652
BstBAI	YACGTR	1 cut(s)	472
BstBI	TTCGAA	1 cut(s)	376
BstC8I	GCNNGC	3 cut(s)	54, 196, 559
BstDEI	CTNAG	3 cut(s)	34, 463, 694
BstF5I	GGATG	3 cut(s)	242, 427, 531
BstFNI	CGCG	1 cut(s)	557
BstKTI	GATC	5 cut(s)	7, 217, 316, 469, 744
BstMAI	GTCTC	3 cut(s)	101, 435, 562
BstMBI	GATC	5 cut(s)	4, 214, 313, 466, 741
BstNI	CCWGG	1 cut(s)	774
BstNSI	RCATGY	2 cut(s)	289, 430
BstSCI	CCNGG	1 cut(s)	772
BstSFI	CTRYAG	2 cut(s)	383, 584
BstUI	CGCG	1 cut(s)	557
BstV1I	GCAGC	2 cut(s)	61, 468
BstV2I	GAAGAC	2 cut(s)	102, 330
Bsu15I	ATCGAT	1 cut(s)	268
Bsu36I	CCTNAGG	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	660
BsuTUI	ATCGAT	1 cut(s)	268
BtgZI	GCGATG	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	242, 427, 531
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	3 cut(s)	54, 196, 559
CaiI	CAGNNNCTG	1 cut(s)	786
CciI	TCATGA	1 cut(s)	541
Cfr10I	RCCGGY	1 cut(s)	452
ClaI	ATCGAT	1 cut(s)	268
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	125, 653
CviAII	CATG	6 cut(s)	286, 292, 427, 542, 562, 656
CviQI	GTAC	2 cut(s)	125, 653
DdeI	CTNAG	3 cut(s)	34, 463, 694
DpnI	GATC	5 cut(s)	6, 216, 315, 468, 743
DpnII	GATC	5 cut(s)	4, 214, 313, 466, 741
EaeI	YGGCCR	1 cut(s)	658
Eco31I	GGTCTC	1 cut(s)	562
Eco81I	CCTNAGG	1 cut(s)	34
Eco88I	CYCGRG	1 cut(s)	709
EcoRII	CCWGG	1 cut(s)	772
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	6 cut(s)	289, 295, 430, 545, 565, 659
FatI	CATG	6 cut(s)	285, 291, 426, 541, 561, 655
Fnu4HI	GCNGC	2 cut(s)	50, 457
FokI	GGATG	3 cut(s)	249, 434, 518
Fsp4HI	GCNGC	2 cut(s)	50, 457
FspBI	CTAG	1 cut(s)	53
GluI	GCNGC	2 cut(s)	50, 457
HaeIII	GGCC	1 cut(s)	660
HapII	CCGG	1 cut(s)	453
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	6 cut(s)	289, 295, 430, 545, 565, 659
HinfI	GANTC	2 cut(s)	16, 219
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	230
Hpy188I	TCNGA	5 cut(s)	169, 307, 466, 511, 675
Hpy188III	TCNNGA	3 cut(s)	356, 542, 739
Hpy8I	GTNNAC	1 cut(s)	230
Hpy99I	CGWCG	1 cut(s)	173
HpyCH4III	ACNGT	4 cut(s)	101, 373, 412, 670
HpyCH4IV	ACGT	2 cut(s)	145, 471
HpyCH4V	TGCA	6 cut(s)	338, 487, 575, 602, 724, 780
HpyF3I	CTNAG	3 cut(s)	34, 463, 694
HpySE526I	ACGT	2 cut(s)	145, 471
Hsp92II	CATG	6 cut(s)	289, 295, 430, 545, 565, 659
Kzo9I	GATC	5 cut(s)	4, 214, 313, 466, 741
LpnPI	CCDG	9 cut(s)	146, 218, 422, 466, 585, 621, 681, 724, 759
Lsp1109I	GCAGC	2 cut(s)	61, 468
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	2 cut(s)	145, 471
MaeIII	GTNAC	2 cut(s)	391, 401
MalI	GATC	5 cut(s)	6, 216, 315, 468, 743
MboI	GATC	5 cut(s)	4, 214, 313, 466, 741
MboII	GAAGA	3 cut(s)	107, 335, 557
MfeI	CAATTG	2 cut(s)	517, 662
MlsI	TGGCCA	1 cut(s)	660
MluCI	AATT	6 cut(s)	241, 441, 517, 662, 727, 734
MluNI	TGGCCA	1 cut(s)	660
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	7 cut(s)	32, 166, 175, 545, 643, 695, 705
Mox20I	TGGCCA	1 cut(s)	660
MroXI	GAANNNNTTC	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	660
MseI	TTAA	2 cut(s)	297, 503
MslI	CAYNNNNRTG	1 cut(s)	290
Msp20I	TGGCCA	1 cut(s)	660
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	774
MunI	CAATTG	2 cut(s)	517, 662
MvaI	CCWGG	1 cut(s)	774
MvnI	CGCG	1 cut(s)	557
NdeII	GATC	5 cut(s)	4, 214, 313, 466, 741
NheI	GCTAGC	1 cut(s)	52
NlaIII	CATG	6 cut(s)	289, 295, 430, 545, 565, 659
NlaIV	GGNNCC	1 cut(s)	118
NspI	RCATGY	2 cut(s)	289, 430
NspV	TTCGAA	1 cut(s)	376
PaeR7I	CTCGAG	1 cut(s)	709
PagI	TCATGA	1 cut(s)	541
PciI	ACATGT	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	1 cut(s)	223
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	16, 219
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	51, 458
Ppu21I	YACGTR	1 cut(s)	472
PscI	ACATGT	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	772
PspGI	CCWGG	1 cut(s)	772
PspN4I	GGNNCC	1 cut(s)	118
PspXI	VCTCGAGB	1 cut(s)	709
PstNI	CAGNNNCTG	1 cut(s)	786
RsaI	GTAC	2 cut(s)	126, 654
RsaNI	GTAC	2 cut(s)	125, 653
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	2 cut(s)	297, 503
SatI	GCNGC	2 cut(s)	50, 457
Sau3AI	GATC	5 cut(s)	4, 214, 313, 466, 741
ScrFI	CCNGG	1 cut(s)	774
SfcI	CTRYAG	2 cut(s)	383, 584
Sfr274I	CTCGAG	1 cut(s)	709
SfuI	TTCGAA	1 cut(s)	376
SlaI	CTCGAG	1 cut(s)	709
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	709
SmoI	CTYRAG	1 cut(s)	709
Sse9I	AATT	6 cut(s)	241, 441, 517, 662, 727, 734
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	772
TaaI	ACNGT	4 cut(s)	101, 373, 412, 670
TaiI	ACGT	2 cut(s)	148, 474
TaqI	TCGA	8 cut(s)	24, 42, 217, 260, 268, 376, 710, 759
TasI	AATT	6 cut(s)	241, 441, 517, 662, 727, 734
TatI	WGTACW	2 cut(s)	124, 652
TfiI	GAWTC	2 cut(s)	16, 219
Tru1I	TTAA	2 cut(s)	297, 503
Tru9I	TTAA	2 cut(s)	297, 503
TseI	GCWGC	2 cut(s)	49, 456
TspDTI	ATGAA	3 cut(s)	155, 513, 558
Van91I	CCANNNNNTGG	1 cut(s)	74
XapI	RAATTY	1 cut(s)	727
XceI	RCATGY	2 cut(s)	289, 430
XhoI	CTCGAG	1 cut(s)	709
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.