Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008629

Physical Location & Seq

Genomic Coordinates Reverse (-)

24936701 .. 24939195

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G221200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAGCAAGGAACCTTATTGGACGAAGCTCTTGGGTCTCTCCATCTCAGTGGTCGCGTTGTTCTCCTCGAAGACTGCGTCGAGACCAGTGCCGCTTTCGTCCTGCACCACATTCTCAAGCGCTCTCTTTCTCAGCCTCCTCACTCCTCCAACGTCGTCGTTTTTGTTGCCTTCGCTCACCCCTTCTCTCACTACGATCGGATCCTTCGAAGACTGGGTTGCAACTTAGTTGTGCAAAAGGACAATAACAGATTCTTTTTCTTTGACGTGCTTGTGGATTGCCCAGATGGTGAAGAAGGAAAAAACAGTGATGGTGGACTTGTTGCTTTGTATGGGAAAATCCAAAAGACTATAAGTGCCTTACCTCAAGAGAACAAGAACTGTATCACTGTTATGATTGATGATATCTCTCTGATGGAGGTGGCTGCTAAGGGATCTACAAATCTTGTTTTAGACTTTCTTCATTACTGCCACACTTTAGTATCAGAATTTGGTTGTTCCTTAGTCATGCTCAATCATGACGATATATATTCAGACACGGTGAGGCCCTCCCTTATTTTACAGATGGAGTATCTAGCAGACATTCTGATACGAGCAGAACCACTAGCCACTGGTTTGGCATCAGATGTGCATGGGCAGTTGACAGTCCTGAACAGTGGGAAGGAGAGATCAAGAAACAAGCTGTCTAATTTCCAATTCAAAGTAAAGGAAAACAGTGTCGAATATTTCTATCCTGGAAGCAGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0006979 GO:0008150 GO:0008284 GO:0009892 GO:0019222 GO:0031537 GO:0031538 GO:0032991 GO:0033588 GO:0042127 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0065007 GO:0080090 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELP6

Protein Analysis

250

Amino Acids

27.75

Weight (kDa)

5.65

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10090
fragaria_vesca	FvH4_7g20560 FvH4_7g20560 FvH4_7g20560
malus_domestica	MD00G1166800.v1.1 MD01G1114500.v1.1 MD01G1114600.v1.1 MD07G1182600.v1.1
prunus_persica	Prupe.2G221200_v2.0.a1 Prupe.2G221200_v2.0.a1
pyrus_communis	pycom01g14350 pycom04g21470 pycom07g17510
rosa_chinensis	RchiOBHm_Chr1g0364441
rosa_laevigata	RLG00000027479
rosa_roxburghii	Rroxscaffold_4G00291830 Rroxscaffold_4G00292270
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324500 Rh1BG287200 Rh1CG303800 Rh1DG318700
rosa_wichuraiana	Rw1G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	3 cut(s)	196, 209, 442
AcsI	RAATTY	1 cut(s)	488
AfeI	AGCGCT	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	700
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	733
AluBI	AGCT	2 cut(s)	29, 682
AluI	AGCT	2 cut(s)	29, 682
Alw26I	GTCTC	2 cut(s)	42, 77
AlwI	GGATC	3 cut(s)	196, 209, 442
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	1 cut(s)	545
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	1 cut(s)	488
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	546
AsuHPI	GGTGA	3 cut(s)	170, 302, 553
AsuII	TTCGAA	1 cut(s)	208
BaeI	ACNNNNGTAYC	2 cut(s)	465, 498
BamHI	GGATCC	1 cut(s)	201
BbsI	GAAGAC	2 cut(s)	78, 217
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	5 cut(s)	51, 281, 305, 409, 559
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	1 cut(s)	735
BcoDI	GTCTC	2 cut(s)	42, 77
BfaI	CTAG	2 cut(s)	575, 605
BfoI	RGCGCY	1 cut(s)	124
BisI	GCNGC	2 cut(s)	93, 426
BlsI	GCNGC	2 cut(s)	94, 427
Bme1390I	CCNGG	1 cut(s)	735
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	546
BmiI	GGNNCC	2 cut(s)	13, 203
BmrFI	CCNGG	1 cut(s)	735
BmrI	ACTGGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	629
BmuI	ACTGGG	1 cut(s)	224
BpiI	GAAGAC	2 cut(s)	78, 217
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	208
BpuEI	CTTGAG	2 cut(s)	101, 351
BsaI	GGTCTC	2 cut(s)	42, 77
Bse1I	ACTGG	3 cut(s)	87, 219, 616
BseBI	CCWGG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	61, 146
BseNI	ACTGG	3 cut(s)	87, 219, 616
BseRI	GAGGAG	3 cut(s)	56, 129, 136
BseXI	GCAGC	1 cut(s)	412
BsgI	GTGCAG	1 cut(s)	89
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	547
BsiEI	CGRYCG	1 cut(s)	199
BsmAI	GTCTC	2 cut(s)	42, 77
BsnI	GGCC	1 cut(s)	547
Bso31I	GGTCTC	2 cut(s)	42, 77
Bsp119I	TTCGAA	1 cut(s)	208
Bsp143I	GATC	4 cut(s)	196, 201, 434, 668
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	547
BspCNI	CTCAG	2 cut(s)	60, 145
BspFNI	CGCG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	13, 203
BspPI	GGATC	3 cut(s)	196, 209, 442
BspT104I	TTCGAA	1 cut(s)	208
BspTNI	GGTCTC	2 cut(s)	42, 77
BsrI	ACTGG	3 cut(s)	87, 219, 616
BssMI	GATC	4 cut(s)	196, 201, 434, 668
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	7 cut(s)	308, 383, 391, 541, 646, 656, 716
BstBI	TTCGAA	1 cut(s)	208
BstDEI	CTNAG	5 cut(s)	47, 132, 226, 429, 502
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	4 cut(s)	199, 204, 437, 671
BstMAI	GTCTC	2 cut(s)	42, 77
BstMBI	GATC	4 cut(s)	196, 201, 434, 668
BstMCI	CGRYCG	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	735
BstSCI	CCNGG	1 cut(s)	733
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	412
BstV2I	GAAGAC	2 cut(s)	78, 217
BstX2I	RGATCY	2 cut(s)	201, 434
BstXI	CCANNNNNNTGG	2 cut(s)	50, 616
BstYI	RGATCY	2 cut(s)	201, 434
BsuRI	GGCC	1 cut(s)	547
BtrI	CACGTC	1 cut(s)	268
BtsIMutI	CAGTG	7 cut(s)	55, 94, 313, 387, 609, 661, 721
CciI	TCATGA	1 cut(s)	517
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	546
CseI	GACGC	1 cut(s)	67
CviAII	CATG	3 cut(s)	508, 518, 632
CviJI	RGCY	6 cut(s)	29, 136, 425, 547, 608, 682
CviKI_1	RGCY	6 cut(s)	29, 136, 425, 547, 608, 682
DdeI	CTNAG	5 cut(s)	47, 132, 226, 429, 502
DpnI	GATC	4 cut(s)	198, 203, 436, 670
DpnII	GATC	4 cut(s)	196, 201, 434, 668
Eco31I	GGTCTC	2 cut(s)	42, 77
Eco32I	GATATC	1 cut(s)	406
Eco47III	AGCGCT	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	733
EcoRV	GATATC	1 cut(s)	406
FaeI	CATG	3 cut(s)	511, 521, 635
FaiI	YATR	8 cut(s)	333, 353, 395, 509, 519, 527, 529, 633
FalI	AAGNNNNNCTT	1 cut(s)	730
FatI	CATG	3 cut(s)	507, 517, 631
Fnu4HI	GCNGC	2 cut(s)	93, 426
Fsp4HI	GCNGC	2 cut(s)	93, 426
FspBI	CTAG	2 cut(s)	575, 605
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	2 cut(s)	93, 426
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	547
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	511, 521, 635
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HinfI	GANTC	1 cut(s)	252
HphI	GGTGA	3 cut(s)	170, 302, 553
Hpy166II	GTNNAC	2 cut(s)	317, 642
Hpy188I	TCNGA	6 cut(s)	201, 414, 487, 535, 588, 625
Hpy188III	TCNNGA	5 cut(s)	82, 368, 518, 649, 672
Hpy8I	GTNNAC	2 cut(s)	317, 642
Hpy99I	CGWCG	3 cut(s)	83, 158, 161
HpyAV	CCTTC	5 cut(s)	181, 193, 215, 290, 655
HpyCH4III	ACNGT	7 cut(s)	308, 383, 391, 541, 646, 656, 716
HpyCH4IV	ACGT	2 cut(s)	153, 267
HpyCH4V	TGCA	4 cut(s)	106, 222, 235, 631
HpyF3I	CTNAG	5 cut(s)	47, 132, 226, 429, 502
HpySE526I	ACGT	2 cut(s)	153, 267
Hsp92II	CATG	3 cut(s)	511, 521, 635
HspAI	GCGC	1 cut(s)	121
Kzo9I	GATC	4 cut(s)	196, 201, 434, 668
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	100, 116, 200, 297, 597, 662, 720, 727
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	1 cut(s)	629
MaeI	CTAG	2 cut(s)	575, 605
MaeII	ACGT	2 cut(s)	153, 267
MalI	GATC	4 cut(s)	198, 203, 436, 670
MboI	GATC	4 cut(s)	196, 201, 434, 668
MboII	GAAGA	4 cut(s)	83, 222, 305, 452
MflI	RGATCY	2 cut(s)	201, 434
MluCI	AATT	3 cut(s)	488, 688, 695
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	8 cut(s)	77, 147, 150, 157, 375, 412, 537, 559
MslI	CAYNNNNRTG	2 cut(s)	48, 392
MspR9I	CCNGG	1 cut(s)	735
MvaI	CCWGG	1 cut(s)	735
MvnI	CGCG	1 cut(s)	57
NdeII	GATC	4 cut(s)	196, 201, 434, 668
NlaIII	CATG	3 cut(s)	511, 521, 635
NlaIV	GGNNCC	2 cut(s)	13, 203
NspV	TTCGAA	1 cut(s)	208
PagI	TCATGA	1 cut(s)	517
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 205
PfeI	GAWTC	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	733
PkrI	GCNGC	2 cut(s)	94, 427
Ple19I	CGATCG	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	733
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	2 cut(s)	13, 203
PspPI	GGNCC	1 cut(s)	546
PsuI	RGATCY	2 cut(s)	201, 434
PsyI	GACNNNGTC	1 cut(s)	77
PvuI	CGATCG	1 cut(s)	199
RseI	CAYNNNNRTG	2 cut(s)	48, 392
SatI	GCNGC	2 cut(s)	93, 426
Sau3AI	GATC	4 cut(s)	196, 201, 434, 668
Sau96I	GGNCC	1 cut(s)	546
ScrFI	CCNGG	1 cut(s)	735
SetI	ASST	7 cut(s)	17, 31, 156, 270, 367, 423, 684
SfaNI	GCATC	1 cut(s)	629
SfuI	TTCGAA	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	48, 392
SmlI	CTYRAG	2 cut(s)	116, 366
SmoI	CTYRAG	2 cut(s)	116, 366
Sse9I	AATT	3 cut(s)	488, 688, 695
SsiI	CCGC	1 cut(s)	93
SspI	AATATT	1 cut(s)	725
SspMI	CTAG	2 cut(s)	575, 605
StyD4I	CCNGG	1 cut(s)	733
TaaI	ACNGT	7 cut(s)	308, 383, 391, 541, 646, 656, 716
TaiI	ACGT	2 cut(s)	156, 270
TaqI	TCGA	4 cut(s)	69, 81, 208, 720
TasI	AATT	3 cut(s)	488, 688, 695
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	252
TscAI	CASTG	7 cut(s)	55, 94, 313, 394, 616, 661, 721
TseI	GCWGC	1 cut(s)	425
TspDTI	ATGAA	1 cut(s)	452
TspRI	CASTG	7 cut(s)	55, 94, 313, 394, 616, 661, 721
Tth111I	GACNNNGTC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	488
XspI	CTAG	2 cut(s)	575, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.