Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008629

Physical Location & Seq

Genomic Coordinates Forward (+)

38173239 .. 38177184

Gene Structure 3946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1166800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCTTATGGACTGCCCAGACGAAGGGAAAAACAGTGATTGTGGATTAATTGCTTTGTATGGGAAAATCCAAAAGACTATAAGTGCCTTAGCTCAAGAGAACAACTGTGTCACCGTTATGATTGACGATATTTCCCTCATGGAGGTGGCTGCTAAGGGGTCTACAAATCTTGTGCTAGACTTTCTGCATTACTGTCATACTTTAATATCAGAATCTGGTTGTTCTTTAATCATGCTCAATCACGAGGATATCTATTCAGGCACAGCGAAGCCTACCCTTATTTTACAGATGGAGTATCTAGCAGACATTCTGATAAGGGCAGAACCGTTGGCCACTGGGTTAGCCTCAGATGTGCACGGGCAGGTATTTGCTAGAAAAAAACATTATGTCTCTCTTCATAGGGAGAGTGCTAGGAATTATATCCCGTCGCATCATTCTTTTAAAAACAGGGGGATTTATGATGGGCATGAGGGATCGAGAAACAAGGTGTCGAATTTCCAATTCAAAGTAAAGGAAAACGGTGTCGAGTATTTCTATCCTGGAAGCAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0006979 GO:0008150 GO:0008284 GO:0009892 GO:0019222 GO:0031537 GO:0031538 GO:0032991 GO:0033588 GO:0042127 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0065007 GO:0080090 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELP6

Protein Analysis

185

Amino Acids

20.52

Weight (kDa)

6.29

Isoelectric Point (pI)

22.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELP6	PF09807	13 - 125	2e-14	Elongation complex protein 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10090
fragaria_vesca	FvH4_7g20560 FvH4_7g20560 FvH4_7g20560
malus_domestica	MD00G1166800.v1.1 MD01G1114500.v1.1 MD01G1114600.v1.1 MD07G1182600.v1.1
prunus_persica	Prupe.2G221200_v2.0.a1 Prupe.2G221200_v2.0.a1
pyrus_communis	pycom01g14350 pycom04g21470 pycom07g17510
rosa_chinensis	RchiOBHm_Chr1g0364441
rosa_laevigata	RLG00000027479
rosa_roxburghii	Rroxscaffold_4G00291830 Rroxscaffold_4G00292270
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324500 Rh1BG287200 Rh1CG303800 Rh1DG318700
rosa_wichuraiana	Rw1G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	352
AccI	GTMKAC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	481
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	493
AfiI	CCNNNNNNNGG	2 cut(s)	23, 142
AgsI	TTSAA	1 cut(s)	505
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	1 cut(s)	394
Alw44I	GTGCAC	1 cut(s)	353
AlwI	GGATC	1 cut(s)	481
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	1 cut(s)	330
ApaLI	GTGCAC	1 cut(s)	353
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	493
AseI	ATTAAT	1 cut(s)	47
AsuHPI	GGTGA	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	357
BalI	TGGCCA	1 cut(s)	332
BauI	CACGAG	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	2 cut(s)	283, 455
BciT130I	CCWGG	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	394
BfaI	CTAG	4 cut(s)	176, 299, 372, 411
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
Bme1390I	CCNGG	1 cut(s)	540
BmrFI	CCNGG	1 cut(s)	540
BmrI	ACTGGG	1 cut(s)	345
BmsI	GCATC	1 cut(s)	439
BmuI	ACTGGG	1 cut(s)	345
Bpu10I	CCTNAGC	2 cut(s)	88, 153
BpuEI	CTTGAG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 142
Bse1I	ACTGG	1 cut(s)	340
BseBI	CCWGG	1 cut(s)	540
BseLI	CCNNNNNNNGG	2 cut(s)	23, 142
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	340
BseSI	GKGCMC	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	136
BshFI	GGCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	23, 142
BsmAI	GTCTC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	473
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	359
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	340
BssMI	GATC	1 cut(s)	473
BssSI	CACGAG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	6 cut(s)	35, 107, 115, 194, 327, 521
Bst6I	CTCTTC	1 cut(s)	399
BstDEI	CTNAG	3 cut(s)	88, 153, 346
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstKTI	GATC	1 cut(s)	476
BstMAI	GTCTC	1 cut(s)	394
BstMBI	GATC	1 cut(s)	473
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	538
BstSLI	GKGCMC	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	332
BtsIMutI	CAGTG	2 cut(s)	40, 333
BveI	ACCTGC	1 cut(s)	352
CaiI	CAGNNNCTG	1 cut(s)	215
CviAII	CATG	3 cut(s)	139, 232, 467
CviJI	RGCY	5 cut(s)	92, 149, 271, 332, 344
CviKI_1	RGCY	5 cut(s)	92, 149, 271, 332, 344
DdeI	CTNAG	3 cut(s)	88, 153, 346
DpnI	GATC	1 cut(s)	475
DpnII	GATC	1 cut(s)	473
DraI	TTTAAA	1 cut(s)	442
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco32I	GATATC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	538
EcoRV	GATATC	1 cut(s)	250
FaeI	CATG	3 cut(s)	142, 235, 470
FalI	AAGNNNNNCTT	1 cut(s)	535
FatI	CATG	3 cut(s)	138, 231, 466
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	150
FspBI	CTAG	4 cut(s)	176, 299, 372, 411
GluI	GCNGC	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	332
Hin1II	CATG	3 cut(s)	142, 235, 470
HinfI	GANTC	1 cut(s)	212
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	162, 355
Hpy188I	TCNGA	3 cut(s)	211, 312, 349
Hpy188III	TCNNGA	3 cut(s)	95, 242, 477
Hpy8I	GTNNAC	2 cut(s)	162, 355
Hpy99I	CGWCG	1 cut(s)	430
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	6 cut(s)	35, 107, 115, 194, 327, 521
HpyCH4V	TGCA	2 cut(s)	187, 355
HpyF3I	CTNAG	3 cut(s)	88, 153, 346
Hsp92II	CATG	3 cut(s)	142, 235, 470
Kzo9I	GATC	1 cut(s)	473
LpnPI	CCDG	7 cut(s)	30, 201, 243, 321, 347, 433, 525
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	4 cut(s)	176, 299, 372, 411
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	1 cut(s)	475
MboI	GATC	1 cut(s)	473
MboII	GAAGA	1 cut(s)	386
MhlI	GDGCHC	1 cut(s)	357
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	4 cut(s)	48, 415, 493, 500
MluNI	TGGCCA	1 cut(s)	332
MnlI	CCTC	5 cut(s)	136, 146, 238, 355, 463
Mox20I	TGGCCA	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	4 cut(s)	47, 203, 227, 441
MslI	CAYNNNNRTG	2 cut(s)	116, 143
Msp20I	TGGCCA	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	540
NdeII	GATC	1 cut(s)	473
NlaIII	CATG	3 cut(s)	142, 235, 470
NmuCI	GTSAC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	212
PfoI	TCCNGGA	1 cut(s)	538
PkrI	GCNGC	1 cut(s)	151
PshBI	ATTAAT	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	215
RseI	CAYNNNNRTG	2 cut(s)	116, 143
SaqAI	TTAA	4 cut(s)	47, 203, 227, 441
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	473
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	4 cut(s)	94, 147, 366, 489
SfaNI	GCATC	1 cut(s)	439
SmiMI	CAYNNNNRTG	2 cut(s)	116, 143
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
Sse9I	AATT	4 cut(s)	48, 415, 493, 500
SspMI	CTAG	4 cut(s)	176, 299, 372, 411
StyD4I	CCNGG	1 cut(s)	538
TaaI	ACNGT	6 cut(s)	35, 107, 115, 194, 327, 521
TaqI	TCGA	3 cut(s)	476, 491, 525
TasI	AATT	4 cut(s)	48, 415, 493, 500
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	4 cut(s)	47, 203, 227, 441
Tru9I	TTAA	4 cut(s)	47, 203, 227, 441
TscAI	CASTG	2 cut(s)	40, 340
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	386
TspRI	CASTG	2 cut(s)	40, 340
VneI	GTGCAC	1 cut(s)	353
VspI	ATTAAT	1 cut(s)	47
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	493
XmiI	GTMKAC	1 cut(s)	161
XspI	CTAG	4 cut(s)	176, 299, 372, 411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.