Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0008629

Physical Location & Seq

Genomic Coordinates Reverse (-)

42284520 .. 42286884

Gene Structure 2365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG287200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAGACCCGAAGCTTATTGGACGAAGCTTTAGGGCTTCAACACCTCACTGGCCGCGTCCTCCTCCTCGAAGACTGCGTCGAGACCAGTGCTGCTTTCGTCCTCCACCACCTGCTTAAGCGCTCTCTCTCTCAGCCTCTTCACTCCTCCAACGTCGTCGTTTTCGTCGCCTTCGCCCAACCCTTCTCTCACTACGATCGAATCCTCCGAAAGCTCGGCTGCAATTTAGCTGCGCATAGGAACGATAATAAATTCATTTTCTTTGATATGCTTAGGGATTTTTGCCCAGATGGAGATAATGGGAAAGGCAGTGATGGTGGACTGGTTGCTTTGTATGGGAAAATCCTGAAGACTATAAGTGCCTTGCCTCAAGAAAACAAGAACTGCGTTACTGTTATGATAGACGATGTATCGTTAATGGAGGTGGCTGCTAAGGGATCTACAAATCTTGTCTTAGATTTTCTGCATTATTGCCACACTTTGTTATCAGAATTTGGATGTTCCTTAGTCATTCTTAATCACGAGGACATCTATTCAGGCATGGGGAGGCCTACGCTGATTTTACAGATGGAGTACCTGGCAGATATTCTGATAAAGGTGGAACCTTTGGCCACTGGTTTGGCCTCAGATGTGCATGGACAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0006979 GO:0008150 GO:0008284 GO:0009892 GO:0019222 GO:0031537 GO:0031538 GO:0032991 GO:0033588 GO:0042127 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0065007 GO:0080090 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELP6

Protein Analysis

215

Amino Acids

23.74

Weight (kDa)

5.61

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Elong_Iki1	PF10483	6 - 208	2.5e-06	Elongator subunit Iki1
ELP6	PF09807	17 - 215	3e-26	Elongation complex protein 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10090
fragaria_vesca	FvH4_7g20560 FvH4_7g20560 FvH4_7g20560
malus_domestica	MD00G1166800.v1.1 MD01G1114500.v1.1 MD01G1114600.v1.1 MD07G1182600.v1.1
prunus_persica	Prupe.2G221200_v2.0.a1 Prupe.2G221200_v2.0.a1
pyrus_communis	pycom01g14350 pycom04g21470 pycom07g17510
rosa_chinensis	RchiOBHm_Chr1g0364441
rosa_laevigata	RLG00000027479
rosa_roxburghii	Rroxscaffold_4G00291830 Rroxscaffold_4G00292270
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324500 Rh1BG287200 Rh1CG303800 Rh1DG318700
rosa_wichuraiana	Rw1G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	120
Acc16I	TGCGCA	1 cut(s)	234
Acc36I	ACCTGC	1 cut(s)	120
AccII	CGCG	1 cut(s)	57
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	1 cut(s)	445
AcoI	YGGCCR	2 cut(s)	52, 609
AcsI	RAATTY	2 cut(s)	251, 491
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	1 cut(s)	575
AfeI	AGCGCT	1 cut(s)	122
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	576
AluBI	AGCT	4 cut(s)	15, 29, 214, 230
AluI	AGCT	4 cut(s)	15, 29, 214, 230
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	445
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	4 cut(s)	52, 548, 609, 621
ApeKI	GCWGC	4 cut(s)	92, 219, 230, 428
ApoI	RAATTY	2 cut(s)	251, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AspLEI	GCGC	2 cut(s)	123, 235
BalI	TGGCCA	1 cut(s)	611
BauI	CACGAG	1 cut(s)	521
BbsI	GAAGAC	2 cut(s)	78, 356
BbvI	GCAGC	4 cut(s)	79, 206, 217, 415
BccI	CCATC	3 cut(s)	284, 308, 562
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	1 cut(s)	578
BcoDI	GTCTC	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	124
BfrI	CTTAAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	120
BisI	GCNGC	5 cut(s)	55, 93, 220, 231, 429
BlsI	GCNGC	5 cut(s)	56, 94, 221, 232, 430
Bme1390I	CCNGG	1 cut(s)	578
BmiI	GGNNCC	1 cut(s)	603
BmrFI	CCNGG	1 cut(s)	578
BpiI	GAAGAC	2 cut(s)	78, 356
Bpu10I	CCTNAGC	2 cut(s)	272, 432
BpuEI	CTTGAG	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	77
Bse1I	ACTGG	4 cut(s)	55, 87, 327, 619
BseBI	CCWGG	1 cut(s)	578
BseGI	GGATG	1 cut(s)	503
BseMII	CTCAG	2 cut(s)	146, 639
BseNI	ACTGG	4 cut(s)	55, 87, 327, 619
BseRI	GAGGAG	3 cut(s)	53, 56, 136
BseXI	GCAGC	4 cut(s)	79, 206, 217, 415
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	4 cut(s)	54, 550, 611, 623
BsiEI	CGRYCG	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	77
BsnI	GGCC	4 cut(s)	54, 550, 611, 623
Bso31I	GGTCTC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	196, 437
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	4 cut(s)	54, 550, 611, 623
BspCNI	CTCAG	2 cut(s)	145, 638
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	603
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	445
BspTI	CTTAAG	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	77
BsrI	ACTGG	4 cut(s)	55, 87, 327, 619
BssMI	GATC	2 cut(s)	196, 437
BssSI	CACGAG	1 cut(s)	521
Bst2BI	CACGAG	1 cut(s)	521
Bst2UI	CCWGG	1 cut(s)	578
Bst4CI	ACNGT	2 cut(s)	394, 642
Bst6I	CTCTTC	1 cut(s)	144
BstAFI	CTTAAG	1 cut(s)	116
BstDEI	CTNAG	6 cut(s)	132, 272, 432, 454, 505, 625
BstF5I	GGATG	1 cut(s)	503
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	2 cut(s)	123, 235
BstKTI	GATC	2 cut(s)	199, 440
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	196, 437
BstMCI	CGRYCG	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	578
BstSCI	CCNGG	1 cut(s)	576
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	4 cut(s)	79, 206, 217, 415
BstV2I	GAAGAC	2 cut(s)	78, 356
BstX2I	RGATCY	1 cut(s)	437
BstXI	CCANNNNNNTGG	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	437
BsuRI	GGCC	4 cut(s)	54, 550, 611, 623
BtsCI	GGATG	1 cut(s)	503
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	4 cut(s)	48, 94, 316, 612
BveI	ACCTGC	1 cut(s)	120
CfoI	GCGC	2 cut(s)	123, 235
CseI	GACGC	2 cut(s)	46, 67
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	2 cut(s)	541, 635
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	6 cut(s)	132, 272, 432, 454, 505, 625
DpnI	GATC	2 cut(s)	198, 439
DpnII	GATC	2 cut(s)	196, 437
EaeI	YGGCCR	2 cut(s)	52, 609
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	550
Eco31I	GGTCTC	1 cut(s)	77
Eco47III	AGCGCT	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	576
FaeI	CATG	2 cut(s)	544, 638
FaiI	YATR	7 cut(s)	237, 269, 336, 356, 398, 542, 636
FatI	CATG	2 cut(s)	540, 634
Fnu4HI	GCNGC	5 cut(s)	55, 93, 220, 231, 429
FokI	GGATG	1 cut(s)	510
Fsp4HI	GCNGC	5 cut(s)	55, 93, 220, 231, 429
FspI	TGCGCA	1 cut(s)	234
GlaI	GCGC	2 cut(s)	122, 234
GluI	GCNGC	5 cut(s)	55, 93, 220, 231, 429
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	4 cut(s)	54, 550, 611, 623
HgaI	GACGC	2 cut(s)	46, 67
HhaI	GCGC	2 cut(s)	123, 235
Hin1II	CATG	2 cut(s)	544, 638
Hin6I	GCGC	2 cut(s)	121, 233
HinP1I	GCGC	2 cut(s)	121, 233
HindIII	AAGCTT	2 cut(s)	13, 27
HinfI	GANTC	1 cut(s)	201
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	4 cut(s)	209, 490, 591, 628
Hpy188III	TCNNGA	4 cut(s)	82, 346, 371, 521
Hpy8I	GTNNAC	1 cut(s)	320
Hpy99I	CGWCG	4 cut(s)	83, 158, 161, 170
HpyAV	CCTTC	2 cut(s)	181, 193
HpyCH4III	ACNGT	2 cut(s)	394, 642
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	222, 466, 634
HpyF3I	CTNAG	6 cut(s)	132, 272, 432, 454, 505, 625
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	544, 638
HspAI	GCGC	2 cut(s)	121, 233
Kzo9I	GATC	2 cut(s)	196, 437
Lsp1109I	GCAGC	4 cut(s)	79, 206, 217, 415
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	2 cut(s)	198, 439
MboI	GATC	2 cut(s)	196, 437
MboII	GAAGA	3 cut(s)	83, 131, 361
MflI	RGATCY	1 cut(s)	437
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	3 cut(s)	223, 251, 491
MluNI	TGGCCA	1 cut(s)	611
MmeI	TCCRAC	1 cut(s)	174
Mox20I	TGGCCA	1 cut(s)	611
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	3 cut(s)	117, 416, 516
Msp20I	TGGCCA	1 cut(s)	611
MspCI	CTTAAG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	578
MvaI	CCWGG	1 cut(s)	578
MvnI	CGCG	1 cut(s)	57
NdeII	GATC	2 cut(s)	196, 437
NlaIII	CATG	2 cut(s)	544, 638
NlaIV	GGNNCC	1 cut(s)	603
NmeAIII	GCCGAG	1 cut(s)	195
NsbI	TGCGCA	1 cut(s)	234
PaqCI	CACCTGC	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 162, 205
PfeI	GAWTC	1 cut(s)	201
PflFI	GACNNNGTC	1 cut(s)	77
PkrI	GCNGC	5 cut(s)	56, 94, 221, 232, 430
Ple19I	CGATCG	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	576
PspN4I	GGNNCC	1 cut(s)	603
PsuI	RGATCY	1 cut(s)	437
PsyI	GACNNNGTC	1 cut(s)	77
PvuI	CGATCG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SaqAI	TTAA	3 cut(s)	117, 416, 516
SatI	GCNGC	5 cut(s)	55, 93, 220, 231, 429
Sau3AI	GATC	2 cut(s)	196, 437
ScrFI	CCNGG	1 cut(s)	578
SmlI	CTYRAG	2 cut(s)	116, 369
SmoI	CTYRAG	2 cut(s)	116, 369
Sse9I	AATT	3 cut(s)	223, 251, 491
SseBI	AGGCCT	1 cut(s)	550
SsiI	CCGC	1 cut(s)	55
StuI	AGGCCT	1 cut(s)	550
StyD4I	CCNGG	1 cut(s)	576
TaaI	ACNGT	2 cut(s)	394, 642
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	3 cut(s)	69, 81, 199
TasI	AATT	3 cut(s)	223, 251, 491
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	3 cut(s)	117, 416, 516
Tru9I	TTAA	3 cut(s)	117, 416, 516
TscAI	CASTG	4 cut(s)	55, 94, 316, 619
TseI	GCWGC	4 cut(s)	92, 219, 230, 428
TspDTI	ATGAA	1 cut(s)	244
TspRI	CASTG	4 cut(s)	55, 94, 316, 619
Tth111I	GACNNNGTC	1 cut(s)	77
Vha464I	CTTAAG	1 cut(s)	116
XapI	RAATTY	2 cut(s)	251, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.