Rroxscaffold_4G00291830

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008629
Physical Location & Seq
Forward (+)
12210435 .. 12212490
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00291830.1

Sequence Viewer

Length: 648 bp
ATGGGCTGCAATTTAGCTGCGCATAGGAACGATAATAAATTCGTTTTCTTTGATATGCTTAGGGATTTTTGCCCAGATGGAGATAATGGGAAAGGCAGTGATGGTGGACTGGTTTCTTTGTATGGGAAAATCCTGAAGACTATAAGTGCCTTGCCTCAAGAAAACAAGAACTGCGTTACTGTTATGATAGACGATGTATCGTTAATGGAGGTGGCTGCTAAGGGATCTACAAATCTTGTCTTAGATTTTCTACATTATTGCCACACTTTGTTATCAGAATTTGGATGTTCCTTAGTCATGCTTAATCATGAGGACATCTATTCAGGCATGGGGAGGCCTACGCTGATTTTACAGATGGAGTACCTGGCGGATATTCTGATAAAGGCGGAACCTTTGGCCACTGGTTTGGCCTCAGATGTGCATGGACAGATATTGATTACTGGTTCACGTTTTGAGTCTTTGATCATTAAGGAAATGGATTATTTGCAGCTTGTATTTGAAAATATGTATGTGCTCCTGTTGATTCAGTTGACAGTTGTGAACAGGAGCATTGATGATATGGAGAGATCAAGAAACAAACTGTGTAATTTCCATTTCAAGGTCAAGGAAAACAGTGTTGAGTATTTCTATCCTGGAAGCCGGACTTGA

Protein Analysis

215

Amino Acids

24.19

Weight (kDa)

5.19

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELP6 PF09807 2 - 151 1.8e-14 Elongation complex protein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 21
AciI CCGC 2 cut(s) 368, 386
AclWI GGATC 1 cut(s) 232
AcoI YGGCCR 1 cut(s) 396
AcsI RAATTY 2 cut(s) 38, 278
AcuI CTGAAG 1 cut(s) 155
AfaI GTAC 1 cut(s) 362
AfiI CCNNNNNNNGG 1 cut(s) 598
AgsI TTSAA 2 cut(s) 500, 598
AjnI CCWGG 2 cut(s) 363, 631
AluBI AGCT 2 cut(s) 17, 490
AluI AGCT 2 cut(s) 17, 490
Alw21I GWGCWC 1 cut(s) 516
AlwI GGATC 1 cut(s) 232
AoxI GGCC 3 cut(s) 335, 396, 408
ApeKI GCWGC 4 cut(s) 6, 17, 215, 487
ApoI RAATTY 2 cut(s) 38, 278
AspLEI GCGC 1 cut(s) 22
BalI TGGCCA 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 3 cut(s) 4, 202, 499
BccI CCATC 3 cut(s) 71, 95, 349
BciT130I CCWGG 2 cut(s) 365, 633
BclI TGATCA 1 cut(s) 462
BisI GCNGC 4 cut(s) 7, 18, 216, 488
BlsI GCNGC 4 cut(s) 8, 19, 217, 489
Bme1390I CCNGG 2 cut(s) 365, 633
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 2 cut(s) 365, 633
BpiI GAAGAC 1 cut(s) 143
Bpu10I CCTNAGC 2 cut(s) 59, 219
BpuEI CTTGAG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 598
Bse1I ACTGG 3 cut(s) 114, 406, 445
BseBI CCWGG 2 cut(s) 365, 633
BseGI GGATG 1 cut(s) 290
BseLI CCNNNNNNNGG 1 cut(s) 598
BseMII CTCAG 1 cut(s) 426
BseNI ACTGG 3 cut(s) 114, 406, 445
BseXI GCAGC 3 cut(s) 4, 202, 499
BshFI GGCC 3 cut(s) 337, 398, 410
BsiHKAI GWGCWC 1 cut(s) 516
BsiSI CCGG 1 cut(s) 640
BslI CCNNNNNNNGG 1 cut(s) 598
BsnI GGCC 3 cut(s) 337, 398, 410
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 3 cut(s) 224, 462, 566
BspACI CCGC 2 cut(s) 368, 386
BspANI GGCC 3 cut(s) 337, 398, 410
BspCNI CTCAG 1 cut(s) 425
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 390
BspPI GGATC 1 cut(s) 232
BsrI ACTGG 3 cut(s) 114, 406, 445
BssMI GATC 3 cut(s) 224, 462, 566
Bst2UI CCWGG 2 cut(s) 365, 633
Bst4CI ACNGT 4 cut(s) 181, 535, 582, 614
BstDEI CTNAG 5 cut(s) 59, 219, 241, 292, 412
BstF5I GGATG 1 cut(s) 290
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 3 cut(s) 227, 465, 569
BstMBI GATC 3 cut(s) 224, 462, 566
BstNI CCWGG 2 cut(s) 365, 633
BstSCI CCNGG 2 cut(s) 363, 631
BstV1I GCAGC 3 cut(s) 4, 202, 499
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 224
BstXI CCANNNNNNTGG 1 cut(s) 406
BstYI RGATCY 1 cut(s) 224
BsuRI GGCC 3 cut(s) 337, 398, 410
BtsCI GGATG 1 cut(s) 290
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 3 cut(s) 103, 399, 619
CciI TCATGA 1 cut(s) 307
CfoI GCGC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 361
CviAII CATG 4 cut(s) 298, 308, 328, 422
CviJI RGCY 8 cut(s) 6, 17, 215, 337, 398, 410, 490, 639
CviKI_1 RGCY 8 cut(s) 6, 17, 215, 337, 398, 410, 490, 639
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 5 cut(s) 59, 219, 241, 292, 412
DpnI GATC 3 cut(s) 226, 464, 568
DpnII GATC 3 cut(s) 224, 462, 566
EaeI YGGCCR 1 cut(s) 396
EciI GGCGGA 2 cut(s) 383, 401
Eco147I AGGCCT 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 155
EcoRII CCWGG 2 cut(s) 363, 631
FaeI CATG 4 cut(s) 301, 311, 331, 425
FalI AAGNNNNNCTT 1 cut(s) 628
FatI CATG 4 cut(s) 297, 307, 327, 421
FbaI TGATCA 1 cut(s) 462
Fnu4HI GCNGC 4 cut(s) 7, 18, 216, 488
FokI GGATG 1 cut(s) 297
Fsp4HI GCNGC 4 cut(s) 7, 18, 216, 488
FspI TGCGCA 1 cut(s) 21
GlaI GCGC 1 cut(s) 21
GluI GCNGC 4 cut(s) 7, 18, 216, 488
HaeIII GGCC 3 cut(s) 337, 398, 410
HapII CCGG 1 cut(s) 640
HhaI GCGC 1 cut(s) 22
Hin1II CATG 4 cut(s) 301, 311, 331, 425
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 1 cut(s) 531
HindII GTYRAC 1 cut(s) 531
HinfI GANTC 2 cut(s) 455, 523
HpaII CCGG 1 cut(s) 640
Hpy166II GTNNAC 4 cut(s) 107, 446, 531, 541
Hpy188I TCNGA 3 cut(s) 277, 378, 415
Hpy188III TCNNGA 4 cut(s) 133, 158, 308, 570
Hpy8I GTNNAC 4 cut(s) 107, 446, 531, 541
HpyCH4III ACNGT 4 cut(s) 181, 535, 582, 614
HpyCH4IV ACGT 1 cut(s) 448
HpyCH4V TGCA 3 cut(s) 9, 421, 487
HpyF3I CTNAG 5 cut(s) 59, 219, 241, 292, 412
HpySE526I ACGT 1 cut(s) 448
Hsp92II CATG 4 cut(s) 301, 311, 331, 425
HspAI GCGC 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 462
Kzo9I GATC 3 cut(s) 224, 462, 566
LmnI GCTCC 2 cut(s) 519, 546
Lsp1109I GCAGC 3 cut(s) 4, 202, 499
MaeII ACGT 1 cut(s) 448
MaeIII GTNAC 1 cut(s) 175
MalI GATC 3 cut(s) 226, 464, 568
MboI GATC 3 cut(s) 224, 462, 566
MboII GAAGA 1 cut(s) 148
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 516
MlsI TGGCCA 1 cut(s) 398
MluCI AATT 4 cut(s) 10, 38, 278, 586
MluNI TGGCCA 1 cut(s) 398
MlyI GAGTC 1 cut(s) 464
MnlI CCTC 5 cut(s) 165, 202, 304, 327, 421
Mox20I TGGCCA 1 cut(s) 398
MscI TGGCCA 1 cut(s) 398
MseI TTAA 3 cut(s) 203, 303, 468
Msp20I TGGCCA 1 cut(s) 398
MspI CCGG 1 cut(s) 640
MspR9I CCNGG 2 cut(s) 365, 633
MvaI CCWGG 2 cut(s) 365, 633
NdeII GATC 3 cut(s) 224, 462, 566
NlaIII CATG 4 cut(s) 301, 311, 331, 425
NlaIV GGNNCC 1 cut(s) 390
NsbI TGCGCA 1 cut(s) 21
PagI TCATGA 1 cut(s) 307
PceI AGGCCT 1 cut(s) 337
PfeI GAWTC 1 cut(s) 523
PfoI TCCNGGA 1 cut(s) 631
PkrI GCNGC 4 cut(s) 8, 19, 217, 489
PleI GAGTC 1 cut(s) 463
PpsI GAGTC 1 cut(s) 463
Psp6I CCWGG 2 cut(s) 363, 631
PspGI CCWGG 2 cut(s) 363, 631
PspN4I GGNNCC 1 cut(s) 390
PsuI RGATCY 1 cut(s) 224
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
SaqAI TTAA 3 cut(s) 203, 303, 468
SatI GCNGC 4 cut(s) 7, 18, 216, 488
Sau3AI GATC 3 cut(s) 224, 462, 566
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 2 cut(s) 365, 633
SduI GDGCHC 1 cut(s) 516
SetI ASST 7 cut(s) 19, 213, 366, 394, 451, 492, 603
SmlI CTYRAG 1 cut(s) 156
SmoI CTYRAG 1 cut(s) 156
Sse9I AATT 4 cut(s) 10, 38, 278, 586
SseBI AGGCCT 1 cut(s) 337
SsiI CCGC 2 cut(s) 368, 386
StuI AGGCCT 1 cut(s) 337
StyD4I CCNGG 2 cut(s) 363, 631
TaaI ACNGT 4 cut(s) 181, 535, 582, 614
TaiI ACGT 1 cut(s) 451
TasI AATT 4 cut(s) 10, 38, 278, 586
TfiI GAWTC 1 cut(s) 523
Tru1I TTAA 3 cut(s) 203, 303, 468
Tru9I TTAA 3 cut(s) 203, 303, 468
TscAI CASTG 3 cut(s) 103, 406, 619
TseI GCWGC 4 cut(s) 6, 17, 215, 487
TspRI CASTG 3 cut(s) 103, 406, 619
XapI RAATTY 2 cut(s) 38, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.