Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008629

Physical Location & Seq

Genomic Coordinates Reverse (-)

22895978 .. 22897027

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1114600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGAGCAGGGAGGAGGCTTATTGGACGAAGCGCTAGGGGATCTCAGCCGCCGCGTTGTGCTCCTCGAAGACTGCGTCGACACTAGCGCCGCTTTCGTCCTCCACCACATTCTCAAGCGCTCTCTCTCTCAGCCTCCCCACTCCACGTCCAACGCCGTCGTTTTTGTTGCGGTTGCAATTTGGCTGCACAGAGGGACAATAATAGATTCTTTTTTCTTGACATGCTTATGGACTGCCCAGGTGAGAAAATCAGGTATAAAATGGTCTTTCAGTTCACTGGCTCAGCCCGGCTTACTCTTATTTACTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0006979 GO:0008150 GO:0008284 GO:0009892 GO:0019222 GO:0031537 GO:0031538 GO:0032991 GO:0033588 GO:0042127 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0065007 GO:0080090 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELP6

Protein Analysis

104

Amino Acids

11.28

Weight (kDa)

6.89

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10090
fragaria_vesca	FvH4_7g20560 FvH4_7g20560 FvH4_7g20560
malus_domestica	MD00G1166800.v1.1 MD01G1114500.v1.1 MD01G1114600.v1.1 MD07G1182600.v1.1
prunus_persica	Prupe.2G221200_v2.0.a1 Prupe.2G221200_v2.0.a1
pyrus_communis	pycom01g14350 pycom04g21470 pycom07g17510
rosa_chinensis	RchiOBHm_Chr1g0364441
rosa_laevigata	RLG00000027479
rosa_roxburghii	Rroxscaffold_4G00291830 Rroxscaffold_4G00292270
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324500 Rh1BG287200 Rh1CG303800 Rh1DG318700
rosa_wichuraiana	Rw1G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	54
AciI	CCGC	4 cut(s)	49, 52, 90, 170
AclWI	GGATC	1 cut(s)	48
AfeI	AGCGCT	2 cut(s)	33, 119
AhlI	ACTAGT	1 cut(s)	305
AjiI	CACGTC	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	237
Alw21I	GWGCWC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	48
Aor51HI	AGCGCT	2 cut(s)	33, 119
ApeKI	GCWGC	1 cut(s)	184
ArsI	GACNNNNNNTTYG	2 cut(s)	60, 92
AspLEI	GCGC	3 cut(s)	34, 89, 120
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	171
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	239
BcnI	CCSGG	1 cut(s)	288
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	3 cut(s)	35, 84, 306
BfoI	RGCGCY	3 cut(s)	35, 90, 121
BisI	GCNGC	4 cut(s)	49, 52, 90, 185
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	4 cut(s)	50, 53, 91, 186
Bme1390I	CCNGG	2 cut(s)	239, 288
BmgBI	CACGTC	1 cut(s)	147
BmrFI	CCNGG	2 cut(s)	239, 288
BpiI	GAAGAC	1 cut(s)	75
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	237
BseMII	CTCAG	3 cut(s)	58, 143, 296
BseNI	ACTGG	1 cut(s)	282
BseRI	GAGGAG	2 cut(s)	27, 53
BseXI	GCAGC	1 cut(s)	171
BsgI	GTGCAG	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	208
BsmFI	GGGAC	1 cut(s)	208
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	1 cut(s)	40
Bsp1720I	GCTNAGC	1 cut(s)	282
BspACI	CCGC	4 cut(s)	49, 52, 90, 170
BspCNI	CTCAG	3 cut(s)	57, 142, 295
BspFNI	CGCG	1 cut(s)	54
BspPI	GGATC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	44, 129, 282
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	3 cut(s)	35, 90, 121
BstHHI	GCGC	3 cut(s)	34, 89, 120
BstKTI	GATC	1 cut(s)	43
BstMBI	GATC	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	2 cut(s)	237, 286
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BtrI	CACGTC	1 cut(s)	147
BtsIMutI	CAGTG	1 cut(s)	275
CfoI	GCGC	3 cut(s)	34, 89, 120
CseI	GACGC	1 cut(s)	64
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	7 cut(s)	18, 48, 133, 184, 281, 286, 291
CviKI_1	RGCY	7 cut(s)	18, 48, 133, 184, 281, 286, 291
DdeI	CTNAG	3 cut(s)	44, 129, 282
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eco47III	AGCGCT	2 cut(s)	33, 119
EcoRII	CCWGG	1 cut(s)	237
FaeI	CATG	1 cut(s)	225
FaiI	YATR	3 cut(s)	223, 229, 257
FaqI	GGGAC	1 cut(s)	208
FatI	CATG	1 cut(s)	221
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	4 cut(s)	49, 52, 90, 185
Fsp4HI	GCNGC	4 cut(s)	49, 52, 90, 185
FspBI	CTAG	3 cut(s)	35, 84, 306
GlaI	GCGC	3 cut(s)	33, 88, 119
GluI	GCNGC	4 cut(s)	49, 52, 90, 185
HaeII	RGCGCY	3 cut(s)	35, 90, 121
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	3 cut(s)	34, 89, 120
Hin1II	CATG	1 cut(s)	225
Hin6I	GCGC	3 cut(s)	32, 87, 118
HinP1I	GCGC	3 cut(s)	32, 87, 118
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	79, 275
Hpy188III	TCNNGA	1 cut(s)	217
Hpy8I	GTNNAC	2 cut(s)	79, 275
Hpy99I	CGWCG	2 cut(s)	80, 161
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	2 cut(s)	176, 187
HpyF3I	CTNAG	3 cut(s)	44, 129, 282
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	1 cut(s)	225
HspAI	GCGC	3 cut(s)	32, 87, 118
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	2 cut(s)	4, 66
LpnPI	CCDG	5 cut(s)	224, 237, 251, 263, 301
Lsp1109I	GCAGC	1 cut(s)	171
MaeI	CTAG	3 cut(s)	35, 84, 306
MaeII	ACGT	1 cut(s)	146
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	1 cut(s)	80
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	6 cut(s)	5, 8, 74, 110, 144, 185
MseI	TTAA	1 cut(s)	310
MslI	CAYNNNNRTG	1 cut(s)	226
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	2 cut(s)	239, 288
MvaI	CCWGG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	54
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	225
NspI	RCATGY	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	206
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	50, 53, 91, 186
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	226
SalI	GTCGAC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	310
SatI	GCNGC	4 cut(s)	49, 52, 90, 185
Sau3AI	GATC	1 cut(s)	40
ScrFI	CCNGG	2 cut(s)	239, 288
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	3 cut(s)	149, 243, 256
SmiMI	CAYNNNNRTG	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	1 cut(s)	177
SsiI	CCGC	4 cut(s)	49, 52, 90, 170
SspMI	CTAG	3 cut(s)	35, 84, 306
StyD4I	CCNGG	2 cut(s)	237, 286
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	2 cut(s)	66, 78
TasI	AATT	1 cut(s)	177
TauI	GCSGC	3 cut(s)	51, 54, 92
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	310
Tru9I	TTAA	1 cut(s)	310
TscAI	CASTG	1 cut(s)	282
TseI	GCWGC	1 cut(s)	184
TspRI	CASTG	1 cut(s)	282
Tth111I	GACNNNGTC	1 cut(s)	74
XceI	RCATGY	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	3 cut(s)	35, 84, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.