Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0008629

Physical Location & Seq

Genomic Coordinates Reverse (-)

22624012 .. 22624854

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTTTACCTCCCACAATTAACCGGCTATTCCCTCCAGGGTGTTGTGCTCCTCAAAGACTGCGTCGACACCAGCGCCGCTTTCGTCCTCCACCACATTCTCAAGCACTCTCTCTCTCGGCCTCCCCACTCCACCTCTAATGCCGTCGTTTTTGTCGCCTTCGGCCGCCCCTTCTCCCACTACGATCGCATCCTCCGAAGGCTCAGACTCGCTCTCTCCATAAAGAATTCCAGTGTTACTACTCCGAATTATAAGCGTTTGTTTTTGTTTTTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0006979 GO:0008150 GO:0008284 GO:0009892 GO:0019222 GO:0031537 GO:0031538 GO:0032991 GO:0033588 GO:0042127 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0065007 GO:0080090 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELP6

Protein Analysis

93

Amino Acids

10.5

Weight (kDa)

10.5

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10090
fragaria_vesca	FvH4_7g20560 FvH4_7g20560 FvH4_7g20560
malus_domestica	MD00G1166800.v1.1 MD01G1114500.v1.1 MD01G1114600.v1.1 MD07G1182600.v1.1
prunus_persica	Prupe.2G221200_v2.0.a1 Prupe.2G221200_v2.0.a1
pyrus_communis	pycom01g14350 pycom04g21470 pycom07g17510
rosa_chinensis	RchiOBHm_Chr1g0364441
rosa_laevigata	RLG00000027479
rosa_roxburghii	Rroxscaffold_4G00291830 Rroxscaffold_4G00292270
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324500 Rh1BG287200 Rh1CG303800 Rh1DG318700
rosa_wichuraiana	Rw1G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	66
AciI	CCGC	2 cut(s)	78, 166
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	36
Alw21I	GWGCWC	1 cut(s)	51
AoxI	GGCC	2 cut(s)	119, 163
ApoI	RAATTY	1 cut(s)	226
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AspLEI	GCGC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	51
BceAI	ACGGC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	78
BisI	GCNGC	2 cut(s)	78, 166
BlsI	GCNGC	2 cut(s)	79, 167
Bme1390I	CCNGG	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	37
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	41
BseX3I	CGGCCG	1 cut(s)	163
Bsh1285I	CGRYCG	2 cut(s)	166, 187
BshFI	GGCC	2 cut(s)	121, 165
BsiEI	CGRYCG	2 cut(s)	166, 187
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	24
BsnI	GGCC	2 cut(s)	121, 165
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	2 cut(s)	78, 166
BspANI	GGCC	2 cut(s)	121, 165
BspCNI	CTCAG	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	189
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	1 cut(s)	187
BstMBI	GATC	1 cut(s)	184
BstMCI	CGRYCG	2 cut(s)	166, 187
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstZI	CGGCCG	1 cut(s)	163
BsuRI	GGCC	2 cut(s)	121, 165
BtsCI	GGATG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	238
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	1 cut(s)	23
CseI	GACGC	1 cut(s)	52
CviJI	RGCY	4 cut(s)	27, 121, 165, 202
CviKI_1	RGCY	4 cut(s)	27, 121, 165, 202
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	163
EagI	CGGCCG	1 cut(s)	163
EclXI	CGGCCG	1 cut(s)	163
Eco52I	CGGCCG	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	36
FaiI	YATR	2 cut(s)	221, 252
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	78, 166
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	78, 166
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	2 cut(s)	78, 166
GsuI	CTGGAG	1 cut(s)	20
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	121, 165
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	77
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	207
HpaII	CCGG	1 cut(s)	24
Hpy166II	GTNNAC	2 cut(s)	7, 67
Hpy188I	TCNGA	3 cut(s)	197, 206, 246
Hpy8I	GTNNAC	2 cut(s)	7, 67
Hpy99I	CGWCG	2 cut(s)	68, 149
HpyAV	CCTTC	3 cut(s)	169, 181, 192
HpyF3I	CTNAG	1 cut(s)	203
HspAI	GCGC	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	5 cut(s)	23, 37, 50, 85, 244
LweI	GCATC	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	3 cut(s)	17, 226, 247
MlyI	GAGTC	1 cut(s)	201
MnlI	CCTC	7 cut(s)	20, 44, 62, 98, 132, 145, 203
MseI	TTAA	2 cut(s)	20, 273
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
NdeII	GATC	1 cut(s)	184
NmeAIII	GCCGAG	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	79, 167
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	1 cut(s)	201
PpsI	GAGTC	1 cut(s)	201
PsiI	TTATAA	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PsyI	GACNNNGTC	1 cut(s)	62
PvuI	CGATCG	1 cut(s)	187
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	2 cut(s)	20, 273
SatI	GCNGC	2 cut(s)	78, 166
Sau3AI	GATC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	2 cut(s)	12, 137
SfaNI	GCATC	1 cut(s)	198
SgeI	CNNG	8 cut(s)	36, 49, 50, 84, 115, 129, 221, 243
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	3 cut(s)	17, 226, 247
SsiI	CCGC	2 cut(s)	78, 166
StyD4I	CCNGG	1 cut(s)	36
TaqI	TCGA	1 cut(s)	66
TasI	AATT	3 cut(s)	17, 226, 247
TauI	GCSGC	2 cut(s)	80, 168
Tru1I	TTAA	2 cut(s)	20, 273
Tru9I	TTAA	2 cut(s)	20, 273
TscAI	CASTG	1 cut(s)	238
TspRI	CASTG	1 cut(s)	238
Tth111I	GACNNNGTC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	226
XmiI	GTMKAC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.