Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008629

Physical Location & Seq

Genomic Coordinates Reverse (-)

22892298 .. 22894438

Gene Structure 2141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1114500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGCAGGGAGGAGGCTTATTGGACGAAGCGCTAGGGGATCTCAGCCGCCGCGTTGTGCTCCTCGAAGACTGCGTCGACACTAGCGCCGCTTTCGTCCTCCACCACATTCTCAAGCGCTCTCTCTCTCAGCCTCCCCACTCCACGTCCAACGCCGTCGTTTTTGTTGCCTTCGCCCACCCCTTCTCTCACTACGATCGCATCCTCCGAAGACTCGGTTGCAATTTGGCTGCACAGAGGGACAATAATAGATTCTTTTTTCTTGACATGCTTATGGACTGCCCAGACGAAGGGAAAAACAGTGATTGTGGATTAATTGCTTTGTATGGGAAAATCCAAAAGACTATAAGTGCCTTAGCTCAAGAGAACAACTGTGTCACCGTTATGATTGACGATATTTCCCTCATGGAGGTGGCTGCTAAGGGGTCTACAAATCTTGTGCTAGACTTTCTGCATTACTGTCATACTTTAATATCAGAATCTGGTTGTTCTTTAATCATGCTCAATCACGAGGATATCTATTCAGGCACAGCGAAGCCTACCCTTATTTTACAGATGGAGTATCTAGCAGACATTCTGATAAGGGCAGAACCGTTGGCCACTGGGTTAGCCTCAGATGTGCACGGGCAGTTGACAGTTAAAAACAGGGGGATTTATGATGGGCATGAGGGATCGAGAAACAAGGTGTCGAATTTCCAATTCAAAGTAAAGGAAAACGGTGTCGAGTATTTCTATCCTGGAAGCAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0006979 GO:0008150 GO:0008284 GO:0009892 GO:0019222 GO:0031537 GO:0031538 GO:0032991 GO:0033588 GO:0042127 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0065007 GO:0080090 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELP6

Protein Analysis

251

Amino Acids

27.66

Weight (kDa)

5.65

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELP6	PF09807	19 - 237	1.8e-29	Elongation complex protein 6
Elong_Iki1	PF10483	20 - 206	5.5e-07	Elongator subunit Iki1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10090
fragaria_vesca	FvH4_7g20560 FvH4_7g20560 FvH4_7g20560
malus_domestica	MD00G1166800.v1.1 MD01G1114500.v1.1 MD01G1114600.v1.1 MD07G1182600.v1.1
prunus_persica	Prupe.2G221200_v2.0.a1 Prupe.2G221200_v2.0.a1
pyrus_communis	pycom01g14350 pycom04g21470 pycom07g17510
rosa_chinensis	RchiOBHm_Chr1g0364441
rosa_laevigata	RLG00000027479
rosa_roxburghii	Rroxscaffold_4G00291830 Rroxscaffold_4G00292270
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324500 Rh1BG287200 Rh1CG303800 Rh1DG318700
rosa_wichuraiana	Rw1G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	78, 428
AccII	CGCG	1 cut(s)	54
AciI	CCGC	3 cut(s)	49, 52, 90
AclWI	GGATC	2 cut(s)	48, 679
AcoI	YGGCCR	1 cut(s)	597
AcsI	RAATTY	1 cut(s)	691
AfeI	AGCGCT	2 cut(s)	33, 119
AfiI	CCNNNNNNNGG	2 cut(s)	290, 409
AgsI	TTSAA	1 cut(s)	703
AjiI	CACGTC	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	736
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Alw21I	GWGCWC	2 cut(s)	63, 624
Alw44I	GTGCAC	1 cut(s)	620
AlwI	GGATC	2 cut(s)	48, 679
AlwNI	CAGNNNCTG	1 cut(s)	482
Aor51HI	AGCGCT	2 cut(s)	33, 119
AoxI	GGCC	1 cut(s)	597
ApaLI	GTGCAC	1 cut(s)	620
ApeKI	GCWGC	2 cut(s)	230, 416
ApoI	RAATTY	1 cut(s)	691
ArsI	GACNNNNNNTTYG	2 cut(s)	60, 92
AseI	ATTAAT	1 cut(s)	314
AspLEI	GCGC	3 cut(s)	34, 89, 120
AsuHPI	GGTGA	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	624
BalI	TGGCCA	1 cut(s)	599
BauI	CACGAG	1 cut(s)	509
BbsI	GAAGAC	2 cut(s)	75, 217
Bbv12I	GWGCWC	2 cut(s)	63, 624
BbvI	GCAGC	2 cut(s)	217, 403
BccI	CCATC	2 cut(s)	550, 653
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	738
BfaI	CTAG	4 cut(s)	35, 84, 443, 566
BfoI	RGCGCY	3 cut(s)	35, 90, 121
BisI	GCNGC	5 cut(s)	49, 52, 90, 231, 417
BlsI	GCNGC	5 cut(s)	50, 53, 91, 232, 418
Bme1390I	CCNGG	1 cut(s)	738
BmgBI	CACGTC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	738
BmrI	ACTGGG	1 cut(s)	612
BmsI	GCATC	1 cut(s)	210
BmuI	ACTGGG	1 cut(s)	612
BpiI	GAAGAC	2 cut(s)	75, 217
Bpu10I	CCTNAGC	2 cut(s)	355, 420
BpuEI	CTTGAG	2 cut(s)	98, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 409
Bse1I	ACTGG	1 cut(s)	607
BseBI	CCWGG	1 cut(s)	738
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	290, 409
BseMII	CTCAG	3 cut(s)	58, 143, 627
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	2 cut(s)	27, 53
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	2 cut(s)	217, 403
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	599
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	2 cut(s)	63, 624
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	290, 409
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	599
Bsp1286I	GDGCHC	2 cut(s)	63, 624
Bsp143I	GATC	3 cut(s)	40, 196, 671
BspACI	CCGC	3 cut(s)	49, 52, 90
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	3 cut(s)	57, 142, 626
BspFNI	CGCG	1 cut(s)	54
BspPI	GGATC	2 cut(s)	48, 679
BsrI	ACTGG	1 cut(s)	607
BssMI	GATC	3 cut(s)	40, 196, 671
BssSI	CACGAG	1 cut(s)	509
Bst2BI	CACGAG	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	7 cut(s)	302, 374, 382, 461, 594, 637, 719
BstDEI	CTNAG	5 cut(s)	44, 129, 355, 420, 613
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	3 cut(s)	35, 90, 121
BstHHI	GCGC	3 cut(s)	34, 89, 120
BstKTI	GATC	3 cut(s)	43, 199, 674
BstMBI	GATC	3 cut(s)	40, 196, 671
BstMCI	CGRYCG	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	738
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	736
BstSLI	GKGCMC	1 cut(s)	624
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	217, 403
BstV2I	GAAGAC	2 cut(s)	75, 217
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	599
BtrI	CACGTC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	307, 600
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	3 cut(s)	34, 89, 120
CseI	GACGC	1 cut(s)	64
CviAII	CATG	4 cut(s)	268, 406, 499, 665
CviJI	RGCY	9 cut(s)	18, 48, 133, 230, 359, 416, 538, 599, 611
CviKI_1	RGCY	9 cut(s)	18, 48, 133, 230, 359, 416, 538, 599, 611
DdeI	CTNAG	5 cut(s)	44, 129, 355, 420, 613
DpnI	GATC	3 cut(s)	42, 198, 673
DpnII	GATC	3 cut(s)	40, 196, 671
EaeI	YGGCCR	1 cut(s)	597
Eco32I	GATATC	1 cut(s)	517
Eco47III	AGCGCT	2 cut(s)	33, 119
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	736
EcoRV	GATATC	1 cut(s)	517
FaeI	CATG	4 cut(s)	271, 409, 502, 668
FalI	AAGNNNNNCTT	1 cut(s)	733
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	267, 405, 498, 664
FblI	GTMKAC	2 cut(s)	78, 428
Fnu4HI	GCNGC	5 cut(s)	49, 52, 90, 231, 417
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	5 cut(s)	49, 52, 90, 231, 417
FspBI	CTAG	4 cut(s)	35, 84, 443, 566
GlaI	GCGC	3 cut(s)	33, 88, 119
GluI	GCNGC	5 cut(s)	49, 52, 90, 231, 417
HaeII	RGCGCY	3 cut(s)	35, 90, 121
HaeIII	GGCC	1 cut(s)	599
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	3 cut(s)	34, 89, 120
Hin1II	CATG	4 cut(s)	271, 409, 502, 668
Hin6I	GCGC	3 cut(s)	32, 87, 118
HinP1I	GCGC	3 cut(s)	32, 87, 118
HincII	GTYRAC	2 cut(s)	79, 633
HindII	GTYRAC	2 cut(s)	79, 633
HinfI	GANTC	3 cut(s)	213, 252, 479
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	4 cut(s)	79, 429, 622, 633
Hpy188I	TCNGA	4 cut(s)	209, 478, 579, 616
Hpy188III	TCNNGA	4 cut(s)	263, 362, 509, 675
Hpy8I	GTNNAC	4 cut(s)	79, 429, 622, 633
Hpy99I	CGWCG	2 cut(s)	80, 161
HpyAV	CCTTC	3 cut(s)	181, 193, 284
HpyCH4III	ACNGT	7 cut(s)	302, 374, 382, 461, 594, 637, 719
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	4 cut(s)	222, 233, 454, 622
HpyF3I	CTNAG	5 cut(s)	44, 129, 355, 420, 613
HpySE526I	ACGT	1 cut(s)	146
Hsp92II	CATG	4 cut(s)	271, 409, 502, 668
HspAI	GCGC	3 cut(s)	32, 87, 118
Kzo9I	GATC	3 cut(s)	40, 196, 671
LmnI	GCTCC	2 cut(s)	4, 66
LpnPI	CCDG	6 cut(s)	297, 468, 510, 588, 631, 723
Lsp1109I	GCAGC	2 cut(s)	217, 403
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	4 cut(s)	35, 84, 443, 566
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	42, 198, 673
MboI	GATC	3 cut(s)	40, 196, 671
MboII	GAAGA	2 cut(s)	80, 222
MflI	RGATCY	1 cut(s)	40
MhlI	GDGCHC	2 cut(s)	63, 624
MlsI	TGGCCA	1 cut(s)	599
MluCI	AATT	4 cut(s)	223, 315, 691, 698
MluNI	TGGCCA	1 cut(s)	599
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	174
Mox20I	TGGCCA	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	599
MseI	TTAA	4 cut(s)	314, 470, 494, 639
MslI	CAYNNNNRTG	3 cut(s)	272, 383, 410
Msp20I	TGGCCA	1 cut(s)	599
MspR9I	CCNGG	1 cut(s)	738
MvaI	CCWGG	1 cut(s)	738
MvnI	CGCG	1 cut(s)	54
NdeII	GATC	3 cut(s)	40, 196, 671
NlaIII	CATG	4 cut(s)	271, 409, 502, 668
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 205
PfeI	GAWTC	2 cut(s)	252, 479
PflFI	GACNNNGTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	736
PkrI	GCNGC	5 cut(s)	50, 53, 91, 232, 418
Ple19I	CGATCG	1 cut(s)	199
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
PshBI	ATTAAT	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	736
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	74
PvuI	CGATCG	1 cut(s)	199
RseI	CAYNNNNRTG	3 cut(s)	272, 383, 410
SalI	GTCGAC	1 cut(s)	77
SaqAI	TTAA	4 cut(s)	314, 470, 494, 639
SatI	GCNGC	5 cut(s)	49, 52, 90, 231, 417
Sau3AI	GATC	3 cut(s)	40, 196, 671
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	738
SduI	GDGCHC	2 cut(s)	63, 624
SetI	ASST	4 cut(s)	149, 361, 414, 687
SfaNI	GCATC	1 cut(s)	210
SmiMI	CAYNNNNRTG	3 cut(s)	272, 383, 410
SmlI	CTYRAG	2 cut(s)	113, 360
SmoI	CTYRAG	2 cut(s)	113, 360
Sse9I	AATT	4 cut(s)	223, 315, 691, 698
SsiI	CCGC	3 cut(s)	49, 52, 90
SspMI	CTAG	4 cut(s)	35, 84, 443, 566
StyD4I	CCNGG	1 cut(s)	736
TaaI	ACNGT	7 cut(s)	302, 374, 382, 461, 594, 637, 719
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	5 cut(s)	66, 78, 674, 689, 723
TasI	AATT	4 cut(s)	223, 315, 691, 698
TauI	GCSGC	3 cut(s)	51, 54, 92
TfiI	GAWTC	2 cut(s)	252, 479
Tru1I	TTAA	4 cut(s)	314, 470, 494, 639
Tru9I	TTAA	4 cut(s)	314, 470, 494, 639
TscAI	CASTG	2 cut(s)	307, 607
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	230, 416
Tsp45I	GTSAC	1 cut(s)	376
TspRI	CASTG	2 cut(s)	307, 607
Tth111I	GACNNNGTC	1 cut(s)	74
VneI	GTGCAC	1 cut(s)	620
VspI	ATTAAT	1 cut(s)	314
XagI	CCTNNNNNAGG	1 cut(s)	407
XapI	RAATTY	1 cut(s)	691
XceI	RCATGY	1 cut(s)	271
XmiI	GTMKAC	2 cut(s)	78, 428
XspI	CTAG	4 cut(s)	35, 84, 443, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.