FvH4_7g20560

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008629
Physical Location & Seq
Reverse (-)
16690700 .. 16693769
3070 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20560.t1

Sequence Viewer

Length: 762 bp
ATGGAGACCCGAAGCTTATTGGACGAAGCTCTAGGGCTTCAACACCTCAGTGGCCGCGTTGTCCTCCTCGAAGACTGCGTCGAGACCAGCGCCGCTTTCGTCCTCCACCACCTGCTCAAGCGCGCTCTCTCTCAGCCTCTTCACTCCTCAAACGTCGTCGTTTTCGTCGCCTTCGCACAACCCTTCTCTCACTACGATCGAATCCTCCGAAAACTCGGCTGCAATTTGGCTGTGCAAAGAGACAATAGTAAATTCTTCTTCTTTGATATGCTTAGGGATTTTTGCCCAGGTGGAGATGATGGAAAAGGTGGTGATGGTGGACTGGTTTCTTTGTATGGGAGAATCCTGAAGACGATAAGTGCCTTGCCTGAGGAAAACAAGAACCGTGTTACTGTTATGATAGACGATGTCTCTCTAATGGAGGTGGCTGCTAAGGGATCTACAAATCTTGTATTGGATTTTCTGCATTACTGCCACACTTTGATATCAGAATTCGGATGTTCCTTAGTCATGCTCAATCACGAGGACATTTATTCATGCATGGGGAGGCCTACACTGATTTTACAGATGGAGTACCTAGCCGATATACTGATAAAGGCAGAACCTTTGGCCACTGGTTTGGCCTCAGATGTGCACGGACAGTTGACAGTTGCGAACAGGAGCATTAATGATGGAGAGAGATCAAGAAACAAGCTGTGTAATTTCCATTTTAAGGTTAAGGAGAACAGTGTTGAGTATTTCTATCCTGGAAGCAGAACTTGA

Protein Analysis

254

Amino Acids

28.22

Weight (kDa)

6.05

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELP6 PF09807 17 - 240 5.3e-29 Elongation complex protein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 120
Acc36I ACCTGC 1 cut(s) 120
AccII CGCG 2 cut(s) 57, 123
AciI CCGC 2 cut(s) 55, 93
AclWI GGATC 1 cut(s) 445
AcoI YGGCCR 2 cut(s) 52, 609
AcsI RAATTY 2 cut(s) 251, 491
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 1 cut(s) 575
AfiI CCNNNNNNNGG 1 cut(s) 712
AgsI TTSAA 1 cut(s) 41
AjnI CCWGG 2 cut(s) 286, 745
AleI CACNNNNGTG 1 cut(s) 48
AluBI AGCT 3 cut(s) 15, 29, 694
AluI AGCT 3 cut(s) 15, 29, 694
Alw21I GWGCWC 1 cut(s) 636
Alw26I GTCTC 3 cut(s) 77, 234, 415
Alw44I GTGCAC 1 cut(s) 632
AlwI GGATC 1 cut(s) 445
AoxI GGCC 4 cut(s) 52, 548, 609, 621
ApaLI GTGCAC 1 cut(s) 632
ApeKI GCWGC 2 cut(s) 219, 428
ApoI RAATTY 2 cut(s) 251, 491
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
AseI ATTAAT 1 cut(s) 666
AspLEI GCGC 3 cut(s) 92, 123, 125
AsuHPI GGTGA 1 cut(s) 323
AxyI CCTNAGG 1 cut(s) 369
BaeGI GKGCMC 1 cut(s) 636
BalI TGGCCA 1 cut(s) 611
BauI CACGAG 1 cut(s) 521
BbsI GAAGAC 2 cut(s) 78, 356
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 2 cut(s) 206, 415
BccI CCATC 4 cut(s) 293, 308, 562, 665
BciT130I CCWGG 2 cut(s) 288, 747
BcoDI GTCTC 3 cut(s) 77, 234, 415
BfaI CTAG 2 cut(s) 32, 578
BfoI RGCGCY 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 120
BisI GCNGC 4 cut(s) 55, 93, 220, 429
BlsI GCNGC 4 cut(s) 56, 94, 221, 430
Bme1390I CCNGG 2 cut(s) 288, 747
BmrFI CCNGG 2 cut(s) 288, 747
BpiI GAAGAC 2 cut(s) 78, 356
Bpu10I CCTNAGC 2 cut(s) 272, 432
BpuEI CTTGAG 1 cut(s) 101
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 286
Bsc4I CCNNNNNNNGG 1 cut(s) 712
Bse1I ACTGG 2 cut(s) 327, 619
Bse21I CCTNAGG 1 cut(s) 369
BseBI CCWGG 2 cut(s) 288, 747
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 503
BseLI CCNNNNNNNGG 1 cut(s) 712
BseMII CTCAG 4 cut(s) 61, 146, 360, 639
BseNI ACTGG 2 cut(s) 327, 619
BsePI GCGCGC 1 cut(s) 121
BseRI GAGGAG 2 cut(s) 56, 136
BseSI GKGCMC 1 cut(s) 636
BseXI GCAGC 2 cut(s) 206, 415
Bsh1236I CGCG 2 cut(s) 57, 123
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 4 cut(s) 54, 550, 611, 623
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 1 cut(s) 636
BslI CCNNNNNNNGG 1 cut(s) 712
BsmAI GTCTC 3 cut(s) 77, 234, 415
BsnI GGCC 4 cut(s) 54, 550, 611, 623
Bso31I GGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 636
Bsp143I GATC 3 cut(s) 196, 437, 680
BspACI CCGC 2 cut(s) 55, 93
BspANI GGCC 4 cut(s) 54, 550, 611, 623
BspCNI CTCAG 4 cut(s) 60, 145, 361, 638
BspFNI CGCG 2 cut(s) 57, 123
BspMI ACCTGC 1 cut(s) 120
BspPI GGATC 1 cut(s) 445
BspTNI GGTCTC 1 cut(s) 77
BsrI ACTGG 2 cut(s) 327, 619
BssECI CCNNGG 1 cut(s) 286
BssHII GCGCGC 1 cut(s) 121
BssMI GATC 3 cut(s) 196, 437, 680
BssSI CACGAG 1 cut(s) 521
Bst2BI CACGAG 1 cut(s) 521
Bst2UI CCWGG 2 cut(s) 288, 747
Bst4CI ACNGT 5 cut(s) 386, 394, 642, 649, 728
Bst6I CTCTTC 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 7 cut(s) 47, 132, 272, 369, 432, 505, 625
BstF5I GGATG 1 cut(s) 503
BstFNI CGCG 2 cut(s) 57, 123
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 3 cut(s) 92, 123, 125
BstKTI GATC 3 cut(s) 199, 440, 683
BstMAI GTCTC 3 cut(s) 77, 234, 415
BstMBI GATC 3 cut(s) 196, 437, 680
BstMCI CGRYCG 1 cut(s) 199
BstNI CCWGG 2 cut(s) 288, 747
BstSCI CCNGG 2 cut(s) 286, 745
BstSLI GKGCMC 1 cut(s) 636
BstUI CGCG 2 cut(s) 57, 123
BstV1I GCAGC 2 cut(s) 206, 415
BstV2I GAAGAC 2 cut(s) 78, 356
BstX2I RGATCY 1 cut(s) 437
BstXI CCANNNNNNTGG 1 cut(s) 619
BstYI RGATCY 1 cut(s) 437
Bsu36I CCTNAGG 1 cut(s) 369
BsuRI GGCC 4 cut(s) 54, 550, 611, 623
BtsCI GGATG 1 cut(s) 503
BtsIMutI CAGTG 4 cut(s) 55, 554, 612, 733
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 123
CfoI GCGC 3 cut(s) 92, 123, 125
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 574
CviAII CATG 3 cut(s) 511, 537, 541
CviQI GTAC 1 cut(s) 574
DdeI CTNAG 7 cut(s) 47, 132, 272, 369, 432, 505, 625
DpnI GATC 3 cut(s) 198, 439, 682
DpnII GATC 3 cut(s) 196, 437, 680
EaeI YGGCCR 2 cut(s) 52, 609
Eam1104I CTCTTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 144
Eco147I AGGCCT 1 cut(s) 550
Eco31I GGTCTC 1 cut(s) 77
Eco32I GATATC 1 cut(s) 486
Eco57I CTGAAG 1 cut(s) 368
Eco81I CCTNAGG 1 cut(s) 369
EcoRI GAATTC 1 cut(s) 491
EcoRII CCWGG 2 cut(s) 286, 745
EcoRV GATATC 1 cut(s) 486
EcoT22I ATGCAT 1 cut(s) 542
FaeI CATG 3 cut(s) 514, 540, 544
FaiI YATR 7 cut(s) 269, 336, 398, 512, 538, 542, 587
FalI AAGNNNNNCTT 1 cut(s) 742
FatI CATG 3 cut(s) 510, 536, 540
Fnu4HI GCNGC 4 cut(s) 55, 93, 220, 429
FokI GGATG 1 cut(s) 510
Fsp4HI GCNGC 4 cut(s) 55, 93, 220, 429
FspBI CTAG 2 cut(s) 32, 578
GlaI GCGC 3 cut(s) 91, 122, 124
GluI GCNGC 4 cut(s) 55, 93, 220, 429
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 4 cut(s) 54, 550, 611, 623
HgaI GACGC 1 cut(s) 67
HhaI GCGC 3 cut(s) 92, 123, 125
Hin1II CATG 3 cut(s) 514, 540, 544
Hin6I GCGC 3 cut(s) 90, 121, 123
HinP1I GCGC 3 cut(s) 90, 121, 123
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 2 cut(s) 201, 342
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 3 cut(s) 320, 634, 645
Hpy188I TCNGA 4 cut(s) 209, 490, 497, 628
Hpy188III TCNNGA 4 cut(s) 82, 346, 521, 684
Hpy8I GTNNAC 3 cut(s) 320, 634, 645
Hpy99I CGWCG 4 cut(s) 83, 158, 161, 170
HpyAV CCTTC 2 cut(s) 181, 193
HpyCH4III ACNGT 5 cut(s) 386, 394, 642, 649, 728
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 5 cut(s) 222, 235, 466, 540, 634
HpyF3I CTNAG 7 cut(s) 47, 132, 272, 369, 432, 505, 625
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 3 cut(s) 514, 540, 544
HspAI GCGC 3 cut(s) 90, 121, 123
Kzo9I GATC 3 cut(s) 196, 437, 680
LmnI GCTCC 1 cut(s) 660
Lsp1109I GCAGC 2 cut(s) 206, 415
MaeI CTAG 2 cut(s) 32, 578
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 388
MalI GATC 3 cut(s) 198, 439, 682
MboI GATC 3 cut(s) 196, 437, 680
MboII GAAGA 5 cut(s) 83, 131, 247, 250, 361
MflI RGATCY 1 cut(s) 437
MhlI GDGCHC 1 cut(s) 636
MlsI TGGCCA 1 cut(s) 611
MluCI AATT 4 cut(s) 223, 251, 491, 700
MluNI TGGCCA 1 cut(s) 611
Mox20I TGGCCA 1 cut(s) 611
Mph1103I ATGCAT 1 cut(s) 542
MscI TGGCCA 1 cut(s) 611
MseI TTAA 3 cut(s) 666, 711, 717
MslI CAYNNNNRTG 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 611
MspR9I CCNGG 2 cut(s) 288, 747
MvaI CCWGG 2 cut(s) 288, 747
MvnI CGCG 2 cut(s) 57, 123
NdeII GATC 3 cut(s) 196, 437, 680
NlaIII CATG 3 cut(s) 514, 540, 544
NmeAIII GCCGAG 1 cut(s) 195
NsiI ATGCAT 1 cut(s) 542
OliI CACNNNNGTG 1 cut(s) 48
PaqCI CACCTGC 1 cut(s) 120
PauI GCGCGC 1 cut(s) 121
PceI AGGCCT 1 cut(s) 550
PcsI WCGNNNNNNNCGW 3 cut(s) 75, 162, 205
PfeI GAWTC 2 cut(s) 201, 342
PflFI GACNNNGTC 2 cut(s) 77, 407
PfoI TCCNGGA 1 cut(s) 745
PkrI GCNGC 4 cut(s) 56, 94, 221, 430
Ple19I CGATCG 1 cut(s) 199
PshBI ATTAAT 1 cut(s) 666
Psp6I CCWGG 2 cut(s) 286, 745
PspGI CCWGG 2 cut(s) 286, 745
PsuI RGATCY 1 cut(s) 437
PsyI GACNNNGTC 2 cut(s) 77, 407
PteI GCGCGC 1 cut(s) 121
PvuI CGATCG 1 cut(s) 199
RsaI GTAC 1 cut(s) 575
RsaNI GTAC 1 cut(s) 574
RseI CAYNNNNRTG 1 cut(s) 48
SaqAI TTAA 3 cut(s) 666, 711, 717
SatI GCNGC 4 cut(s) 55, 93, 220, 429
Sau3AI GATC 3 cut(s) 196, 437, 680
ScrFI CCNGG 2 cut(s) 288, 747
SduI GDGCHC 1 cut(s) 636
SmiMI CAYNNNNRTG 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 4 cut(s) 223, 251, 491, 700
SseBI AGGCCT 1 cut(s) 550
SsiI CCGC 2 cut(s) 55, 93
SspMI CTAG 2 cut(s) 32, 578
StuI AGGCCT 1 cut(s) 550
StyD4I CCNGG 2 cut(s) 286, 745
TaaI ACNGT 5 cut(s) 386, 394, 642, 649, 728
TaiI ACGT 1 cut(s) 156
TaqI TCGA 3 cut(s) 69, 81, 199
TasI AATT 4 cut(s) 223, 251, 491, 700
TauI GCSGC 2 cut(s) 57, 95
TfiI GAWTC 2 cut(s) 201, 342
Tru1I TTAA 3 cut(s) 666, 711, 717
Tru9I TTAA 3 cut(s) 666, 711, 717
TscAI CASTG 4 cut(s) 55, 561, 619, 733
TseI GCWGC 2 cut(s) 219, 428
TspDTI ATGAA 1 cut(s) 525
TspGWI ACGGA 1 cut(s) 651
TspRI CASTG 4 cut(s) 55, 561, 619, 733
Tth111I GACNNNGTC 2 cut(s) 77, 407
VneI GTGCAC 1 cut(s) 632
VspI ATTAAT 1 cut(s) 666
XapI RAATTY 2 cut(s) 251, 491
XspI CTAG 2 cut(s) 32, 578
Zsp2I ATGCAT 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.