Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008629

Physical Location & Seq

Genomic Coordinates Forward (+)

12637619 .. 12639799

Gene Structure 2181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00292270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAGGCCCGAAGCTTATTGGACGAAGCTTTAGGGCTTCAACACCTCACTGGCCGCGTCCTCCTCCTCGAAGACTGCGTCGAGACCAGTGCTGCTTTCGTCCTCCACCACCTGCTTAAGCGCTCTCTTTCTCAGCCCCTTCACTCCTCCAACGTCGTCGTTTTCGTCGCCTTCGCCCAACCCTTCTCTCACTACGATCGAATCCTCCGAAAGCTCGGCTGCAATTTAGCTGCGCATAGGAACGATAATAAATTCGTTTTCTTTGATATGCTTAGGGATTTTTGCCCAGATGGAGATAATGGGAAAGGCAGTGATGGTGGACTGGTTTCTTTGTATGGGAAAATCCTGAAGACTATAAGTGCCTTGCCTCAAGAAAACAAGAACTGCGTTACTGTTATGATAGACGATGTATCGTTAATGGAGGTGGCTGCTAAGGGATCTACAAATCTTGTCTTAGATTTTCTACATTATTGCCACACTTTGTTATCAGAATTTGGATGTTCCTTAGTCATGCTTAATCATGAGGACATCTATTCAGGCATGGGGAGGCCTACGCTGATTTTACAGATGGAGTACCTGGCGGATATTCTGATAAAGGCGGAACCTTTGGCCACTGGTTTGGCCTCAGATGTGCATGGACAGTTGACAGTTGTGAACAGGAGCATTGATGATATGGAGAGATCAAGAAACAAACTGTGTAATTTCCATTTCAAGGTCAAGGAAAACAGTGTTGAGTATTTCTATCCTGGAAGCCGGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0006979 GO:0008150 GO:0008284 GO:0009892 GO:0019222 GO:0031537 GO:0031538 GO:0032991 GO:0033588 GO:0042127 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0065007 GO:0080090 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELP6

Protein Analysis

253

Amino Acids

28.25

Weight (kDa)

5.98

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Elong_Iki1	PF10483	6 - 221	3.8e-06	Elongator subunit Iki1
ELP6	PF09807	17 - 240	5.2e-31	Elongation complex protein 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10090
fragaria_vesca	FvH4_7g20560 FvH4_7g20560 FvH4_7g20560
malus_domestica	MD00G1166800.v1.1 MD01G1114500.v1.1 MD01G1114600.v1.1 MD07G1182600.v1.1
prunus_persica	Prupe.2G221200_v2.0.a1 Prupe.2G221200_v2.0.a1
pyrus_communis	pycom01g14350 pycom04g21470 pycom07g17510
rosa_chinensis	RchiOBHm_Chr1g0364441
rosa_laevigata	RLG00000027479
rosa_roxburghii	Rroxscaffold_4G00291830 Rroxscaffold_4G00292270
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324500 Rh1BG287200 Rh1CG303800 Rh1DG318700
rosa_wichuraiana	Rw1G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	120
Acc16I	TGCGCA	1 cut(s)	234
Acc36I	ACCTGC	1 cut(s)	120
AccII	CGCG	1 cut(s)	57
AciI	CCGC	3 cut(s)	55, 581, 599
AclWI	GGATC	1 cut(s)	445
AcoI	YGGCCR	2 cut(s)	52, 609
AcsI	RAATTY	2 cut(s)	251, 491
AcuI	CTGAAG	1 cut(s)	368
AfaI	GTAC	1 cut(s)	575
AfeI	AGCGCT	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	712
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	2 cut(s)	41, 712
AjnI	CCWGG	2 cut(s)	576, 745
AluBI	AGCT	4 cut(s)	15, 29, 214, 230
AluI	AGCT	4 cut(s)	15, 29, 214, 230
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	445
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	5 cut(s)	6, 52, 548, 609, 621
ApeKI	GCWGC	4 cut(s)	92, 219, 230, 428
ApoI	RAATTY	2 cut(s)	251, 491
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AspLEI	GCGC	2 cut(s)	123, 235
AspS9I	GGNCC	1 cut(s)	7
BalI	TGGCCA	1 cut(s)	611
BbsI	GAAGAC	2 cut(s)	78, 356
BbvI	GCAGC	4 cut(s)	79, 206, 217, 415
BccI	CCATC	3 cut(s)	284, 308, 562
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	2 cut(s)	578, 747
BcoDI	GTCTC	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	124
BfrI	CTTAAG	1 cut(s)	116
BfuAI	ACCTGC	1 cut(s)	120
BisI	GCNGC	5 cut(s)	55, 93, 220, 231, 429
BlsI	GCNGC	5 cut(s)	56, 94, 221, 232, 430
Bme1390I	CCNGG	2 cut(s)	578, 747
BmgT120I	GGNCC	1 cut(s)	7
BmiI	GGNNCC	1 cut(s)	603
BmrFI	CCNGG	2 cut(s)	578, 747
BpiI	GAAGAC	2 cut(s)	78, 356
Bpu10I	CCTNAGC	2 cut(s)	272, 432
BpuEI	CTTGAG	1 cut(s)	354
BsaI	GGTCTC	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	712
Bse1I	ACTGG	4 cut(s)	55, 87, 327, 619
BseBI	CCWGG	2 cut(s)	578, 747
BseGI	GGATG	1 cut(s)	503
BseLI	CCNNNNNNNGG	1 cut(s)	712
BseMII	CTCAG	2 cut(s)	146, 639
BseNI	ACTGG	4 cut(s)	55, 87, 327, 619
BseRI	GAGGAG	3 cut(s)	53, 56, 136
BseXI	GCAGC	4 cut(s)	79, 206, 217, 415
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	5 cut(s)	8, 54, 550, 611, 623
BsiEI	CGRYCG	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	754
BslI	CCNNNNNNNGG	1 cut(s)	712
BsmAI	GTCTC	1 cut(s)	77
BsnI	GGCC	5 cut(s)	8, 54, 550, 611, 623
Bso31I	GGTCTC	1 cut(s)	77
Bsp143I	GATC	3 cut(s)	196, 437, 680
BspACI	CCGC	3 cut(s)	55, 581, 599
BspANI	GGCC	5 cut(s)	8, 54, 550, 611, 623
BspCNI	CTCAG	2 cut(s)	145, 638
BspFNI	CGCG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	1 cut(s)	603
BspMI	ACCTGC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	445
BspTI	CTTAAG	1 cut(s)	116
BspTNI	GGTCTC	1 cut(s)	77
BsrI	ACTGG	4 cut(s)	55, 87, 327, 619
BssMI	GATC	3 cut(s)	196, 437, 680
Bst2UI	CCWGG	2 cut(s)	578, 747
Bst4CI	ACNGT	5 cut(s)	394, 642, 649, 696, 728
BstAFI	CTTAAG	1 cut(s)	116
BstDEI	CTNAG	6 cut(s)	132, 272, 432, 454, 505, 625
BstF5I	GGATG	1 cut(s)	503
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	2 cut(s)	123, 235
BstKTI	GATC	3 cut(s)	199, 440, 683
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	3 cut(s)	196, 437, 680
BstMCI	CGRYCG	1 cut(s)	199
BstNI	CCWGG	2 cut(s)	578, 747
BstSCI	CCNGG	2 cut(s)	576, 745
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	4 cut(s)	79, 206, 217, 415
BstV2I	GAAGAC	2 cut(s)	78, 356
BstX2I	RGATCY	1 cut(s)	437
BstXI	CCANNNNNNTGG	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	437
BsuRI	GGCC	5 cut(s)	8, 54, 550, 611, 623
BtsCI	GGATG	1 cut(s)	503
BtsI	GCAGTG	1 cut(s)	316
BtsIMutI	CAGTG	5 cut(s)	48, 94, 316, 612, 733
BveI	ACCTGC	1 cut(s)	120
CciI	TCATGA	1 cut(s)	520
CfoI	GCGC	2 cut(s)	123, 235
Cfr13I	GGNCC	1 cut(s)	7
CseI	GACGC	2 cut(s)	46, 67
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	4 cut(s)	511, 521, 541, 635
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	6 cut(s)	132, 272, 432, 454, 505, 625
DpnI	GATC	3 cut(s)	198, 439, 682
DpnII	GATC	3 cut(s)	196, 437, 680
EaeI	YGGCCR	2 cut(s)	52, 609
EciI	GGCGGA	2 cut(s)	596, 614
Eco147I	AGGCCT	1 cut(s)	550
Eco31I	GGTCTC	1 cut(s)	77
Eco47III	AGCGCT	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	576, 745
FaeI	CATG	4 cut(s)	514, 524, 544, 638
FalI	AAGNNNNNCTT	1 cut(s)	742
FatI	CATG	4 cut(s)	510, 520, 540, 634
Fnu4HI	GCNGC	5 cut(s)	55, 93, 220, 231, 429
FokI	GGATG	1 cut(s)	510
Fsp4HI	GCNGC	5 cut(s)	55, 93, 220, 231, 429
FspI	TGCGCA	1 cut(s)	234
GlaI	GCGC	2 cut(s)	122, 234
GluI	GCNGC	5 cut(s)	55, 93, 220, 231, 429
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	5 cut(s)	8, 54, 550, 611, 623
HapII	CCGG	1 cut(s)	754
HgaI	GACGC	2 cut(s)	46, 67
HhaI	GCGC	2 cut(s)	123, 235
Hin1II	CATG	4 cut(s)	514, 524, 544, 638
Hin6I	GCGC	2 cut(s)	121, 233
HinP1I	GCGC	2 cut(s)	121, 233
HincII	GTYRAC	1 cut(s)	645
HindII	GTYRAC	1 cut(s)	645
HindIII	AAGCTT	2 cut(s)	13, 27
HinfI	GANTC	1 cut(s)	201
HpaII	CCGG	1 cut(s)	754
Hpy166II	GTNNAC	3 cut(s)	320, 645, 655
Hpy188I	TCNGA	4 cut(s)	209, 490, 591, 628
Hpy188III	TCNNGA	5 cut(s)	82, 346, 371, 521, 684
Hpy8I	GTNNAC	3 cut(s)	320, 645, 655
Hpy99I	CGWCG	4 cut(s)	83, 158, 161, 170
HpyAV	CCTTC	3 cut(s)	149, 181, 193
HpyCH4III	ACNGT	5 cut(s)	394, 642, 649, 696, 728
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	2 cut(s)	222, 634
HpyF3I	CTNAG	6 cut(s)	132, 272, 432, 454, 505, 625
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	4 cut(s)	514, 524, 544, 638
HspAI	GCGC	2 cut(s)	121, 233
Kzo9I	GATC	3 cut(s)	196, 437, 680
LmnI	GCTCC	1 cut(s)	660
Lsp1109I	GCAGC	4 cut(s)	79, 206, 217, 415
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	3 cut(s)	198, 439, 682
MboI	GATC	3 cut(s)	196, 437, 680
MboII	GAAGA	2 cut(s)	83, 361
MflI	RGATCY	1 cut(s)	437
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	4 cut(s)	223, 251, 491, 700
MluNI	TGGCCA	1 cut(s)	611
MmeI	TCCRAC	1 cut(s)	174
Mox20I	TGGCCA	1 cut(s)	611
MscI	TGGCCA	1 cut(s)	611
MseI	TTAA	3 cut(s)	117, 416, 516
Msp20I	TGGCCA	1 cut(s)	611
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	1 cut(s)	754
MspR9I	CCNGG	2 cut(s)	578, 747
MvaI	CCWGG	2 cut(s)	578, 747
MvnI	CGCG	1 cut(s)	57
NdeII	GATC	3 cut(s)	196, 437, 680
NlaIII	CATG	4 cut(s)	514, 524, 544, 638
NlaIV	GGNNCC	1 cut(s)	603
NmeAIII	GCCGAG	1 cut(s)	195
NsbI	TGCGCA	1 cut(s)	234
PagI	TCATGA	1 cut(s)	520
PaqCI	CACCTGC	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	3 cut(s)	75, 162, 205
PfeI	GAWTC	1 cut(s)	201
PflFI	GACNNNGTC	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	745
PkrI	GCNGC	5 cut(s)	56, 94, 221, 232, 430
Ple19I	CGATCG	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	576, 745
PspGI	CCWGG	2 cut(s)	576, 745
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	437
PsyI	GACNNNGTC	1 cut(s)	77
PvuI	CGATCG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SaqAI	TTAA	3 cut(s)	117, 416, 516
SatI	GCNGC	5 cut(s)	55, 93, 220, 231, 429
Sau3AI	GATC	3 cut(s)	196, 437, 680
Sau96I	GGNCC	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	578, 747
SmlI	CTYRAG	2 cut(s)	116, 369
SmoI	CTYRAG	2 cut(s)	116, 369
Sse9I	AATT	4 cut(s)	223, 251, 491, 700
SseBI	AGGCCT	1 cut(s)	550
SsiI	CCGC	3 cut(s)	55, 581, 599
StuI	AGGCCT	1 cut(s)	550
StyD4I	CCNGG	2 cut(s)	576, 745
TaaI	ACNGT	5 cut(s)	394, 642, 649, 696, 728
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	3 cut(s)	69, 81, 199
TasI	AATT	4 cut(s)	223, 251, 491, 700
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	3 cut(s)	117, 416, 516
Tru9I	TTAA	3 cut(s)	117, 416, 516
TscAI	CASTG	5 cut(s)	55, 94, 316, 619, 733
TseI	GCWGC	4 cut(s)	92, 219, 230, 428
TspRI	CASTG	5 cut(s)	55, 94, 316, 619, 733
Tth111I	GACNNNGTC	1 cut(s)	77
Vha464I	CTTAAG	1 cut(s)	116
XapI	RAATTY	2 cut(s)	251, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.