Rh1AG324500

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0008629
Physical Location & Seq
Reverse (-)
55810143 .. 55812566
2424 bp
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UTR
Exon/CDS
Intron
Rh1AG324500.1

Sequence Viewer

Length: 558 bp
ATGGAGACCCGAAGCTTATTGGACGAAGCTTTAGGGCTTCAACACCTCACTGGCCGCGTCCTCCTCCTCGAAGACTGCGTCGAGACCAGTGCTGCTTTCGTCCTCCACCACCTGCTTAAGCGCTCTCTTTCTCAGCCTCTTCACTCCTCCAACGTCGTCGTTTTCGTCGCCTTCGCCCAACCCTTCTCTCACTACGATCGAATCCTCCGAAAGCTCGGCTGCAATTTAGCTGCGCATAGGAACGATAATAAATTCGTTTTCTTTGATATGCTTAGGGATTTTTGCCCAGATGGAGATAATGGGAAAGGCAATGATGGTGGATTGGTTTCTTTGTATGGGAAAATCCTGAAGACTATAAGTGCCTTGCCTCAAGAAAACAAGAACTGCGTTACTGTTATGATAGACGATGTGTCGTTAATGGAGGTGTCTACTAAGGGATCTACAAATCTTGTCTTAGATTTTCTGCATTATTGCCACACTTTGATATCAGAATTTGTAAGGAATCAATTGAAACTGTTCTTTGTGTGCGATACTTATACTCGGTGCAGTTCTGTTTAA

Protein Analysis

185

Amino Acids

20.79

Weight (kDa)

6.43

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ELP6 PF09807 17 - 171 1.7e-19 Elongation complex protein 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 120
Acc16I TGCGCA 1 cut(s) 234
Acc36I ACCTGC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 428
AccII CGCG 1 cut(s) 57
AciI CCGC 1 cut(s) 55
AclWI GGATC 1 cut(s) 445
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 2 cut(s) 251, 491
AcuI CTGAAG 1 cut(s) 368
AfeI AGCGCT 1 cut(s) 122
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 2 cut(s) 41, 511
AhdI GACNNNNNGTC 1 cut(s) 409
AluBI AGCT 4 cut(s) 15, 29, 214, 230
AluI AGCT 4 cut(s) 15, 29, 214, 230
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 1 cut(s) 445
Aor51HI AGCGCT 1 cut(s) 122
AoxI GGCC 1 cut(s) 52
ApeKI GCWGC 3 cut(s) 92, 219, 230
ApoI RAATTY 2 cut(s) 251, 491
ArsI GACNNNNNNTTYG 2 cut(s) 63, 95
Asp700I GAANNNNTTC 1 cut(s) 515
AspLEI GCGC 2 cut(s) 123, 235
BbsI GAAGAC 2 cut(s) 78, 356
BbvI GCAGC 3 cut(s) 79, 206, 217
BccI CCATC 2 cut(s) 284, 308
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BcoDI GTCTC 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 124
BfrI CTTAAG 1 cut(s) 116
BfuAI ACCTGC 1 cut(s) 120
BisI GCNGC 4 cut(s) 55, 93, 220, 231
BlsI GCNGC 4 cut(s) 56, 94, 221, 232
BmeRI GACNNNNNGTC 1 cut(s) 409
BpiI GAAGAC 2 cut(s) 78, 356
Bpu10I CCTNAGC 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 77
Bse1I ACTGG 2 cut(s) 55, 87
Bse3DI GCAATG 1 cut(s) 316
BseMI GCAATG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 2 cut(s) 55, 87
BseRI GAGGAG 3 cut(s) 53, 56, 136
BseXI GCAGC 3 cut(s) 79, 206, 217
Bsh1236I CGCG 1 cut(s) 57
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 1 cut(s) 54
BsiEI CGRYCG 1 cut(s) 199
BsmAI GTCTC 1 cut(s) 77
BsnI GGCC 1 cut(s) 54
Bso31I GGTCTC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 196, 437
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 54
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 120
BspPI GGATC 1 cut(s) 445
BspTI CTTAAG 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 316
BsrI ACTGG 2 cut(s) 55, 87
BssMI GATC 2 cut(s) 196, 437
Bst4CI ACNGT 2 cut(s) 394, 516
Bst6I CTCTTC 1 cut(s) 144
BstAFI CTTAAG 1 cut(s) 116
BstDEI CTNAG 4 cut(s) 132, 272, 432, 454
BstFNI CGCG 1 cut(s) 57
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 2 cut(s) 123, 235
BstKTI GATC 2 cut(s) 199, 440
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 2 cut(s) 196, 437
BstMCI CGRYCG 1 cut(s) 199
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 3 cut(s) 79, 206, 217
BstV2I GAAGAC 2 cut(s) 78, 356
BstX2I RGATCY 1 cut(s) 437
BstYI RGATCY 1 cut(s) 437
BsuRI GGCC 1 cut(s) 54
BtsIMutI CAGTG 2 cut(s) 48, 94
BveI ACCTGC 1 cut(s) 120
CfoI GCGC 2 cut(s) 123, 235
CseI GACGC 2 cut(s) 46, 67
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviJI RGCY 8 cut(s) 15, 29, 37, 54, 136, 214, 219, 230
CviKI_1 RGCY 8 cut(s) 15, 29, 37, 54, 136, 214, 219, 230
DdeI CTNAG 4 cut(s) 132, 272, 432, 454
DpnI GATC 2 cut(s) 198, 439
DpnII GATC 2 cut(s) 196, 437
DriI GACNNNNNGTC 1 cut(s) 409
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 144
Eam1105I GACNNNNNGTC 1 cut(s) 409
EarI CTCTTC 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 77
Eco32I GATATC 1 cut(s) 486
Eco47III AGCGCT 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 368
EcoRV GATATC 1 cut(s) 486
FaiI YATR 6 cut(s) 237, 269, 336, 356, 398, 537
FblI GTMKAC 1 cut(s) 428
Fnu4HI GCNGC 4 cut(s) 55, 93, 220, 231
Fsp4HI GCNGC 4 cut(s) 55, 93, 220, 231
FspI TGCGCA 1 cut(s) 234
GlaI GCGC 2 cut(s) 122, 234
GluI GCNGC 4 cut(s) 55, 93, 220, 231
HaeII RGCGCY 1 cut(s) 124
HaeIII GGCC 1 cut(s) 54
HgaI GACGC 2 cut(s) 46, 67
HhaI GCGC 2 cut(s) 123, 235
Hin6I GCGC 2 cut(s) 121, 233
HinP1I GCGC 2 cut(s) 121, 233
HindIII AAGCTT 2 cut(s) 13, 27
HinfI GANTC 2 cut(s) 201, 502
Hpy166II GTNNAC 1 cut(s) 429
Hpy188I TCNGA 2 cut(s) 209, 490
Hpy188III TCNNGA 3 cut(s) 82, 346, 371
Hpy8I GTNNAC 1 cut(s) 429
Hpy99I CGWCG 4 cut(s) 83, 158, 161, 170
HpyAV CCTTC 2 cut(s) 181, 193
HpyCH4III ACNGT 2 cut(s) 394, 516
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 3 cut(s) 222, 466, 546
HpyF3I CTNAG 4 cut(s) 132, 272, 432, 454
HpySE526I ACGT 1 cut(s) 153
HspAI GCGC 2 cut(s) 121, 233
Kzo9I GATC 2 cut(s) 196, 437
LpnPI CCDG 5 cut(s) 36, 100, 125, 300, 359
Lsp1109I GCAGC 3 cut(s) 79, 206, 217
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 388
MalI GATC 2 cut(s) 198, 439
MboI GATC 2 cut(s) 196, 437
MboII GAAGA 3 cut(s) 83, 131, 361
MfeI CAATTG 1 cut(s) 506
MflI RGATCY 1 cut(s) 437
MluCI AATT 4 cut(s) 223, 251, 491, 506
MmeI TCCRAC 1 cut(s) 174
MroXI GAANNNNTTC 1 cut(s) 515
MseI TTAA 3 cut(s) 117, 416, 556
MspCI CTTAAG 1 cut(s) 116
MunI CAATTG 1 cut(s) 506
MvnI CGCG 1 cut(s) 57
NdeII GATC 2 cut(s) 196, 437
NmeAIII GCCGAG 1 cut(s) 195
NsbI TGCGCA 1 cut(s) 234
PaqCI CACCTGC 1 cut(s) 120
PcsI WCGNNNNNNNCGW 3 cut(s) 75, 162, 205
PdmI GAANNNNTTC 1 cut(s) 515
PfeI GAWTC 2 cut(s) 201, 502
PflFI GACNNNGTC 1 cut(s) 77
PkrI GCNGC 4 cut(s) 56, 94, 221, 232
Ple19I CGATCG 1 cut(s) 199
PsuI RGATCY 1 cut(s) 437
PsyI GACNNNGTC 1 cut(s) 77
PvuI CGATCG 1 cut(s) 199
SaqAI TTAA 3 cut(s) 117, 416, 556
SatI GCNGC 4 cut(s) 55, 93, 220, 231
Sau3AI GATC 2 cut(s) 196, 437
SetI ASST 8 cut(s) 17, 31, 48, 114, 156, 216, 232, 426
SmlI CTYRAG 2 cut(s) 116, 369
SmoI CTYRAG 2 cut(s) 116, 369
Sse9I AATT 4 cut(s) 223, 251, 491, 506
SsiI CCGC 1 cut(s) 55
TaaI ACNGT 2 cut(s) 394, 516
TaiI ACGT 1 cut(s) 156
TaqI TCGA 3 cut(s) 69, 81, 199
TasI AATT 4 cut(s) 223, 251, 491, 506
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 2 cut(s) 201, 502
Tru1I TTAA 3 cut(s) 117, 416, 556
Tru9I TTAA 3 cut(s) 117, 416, 556
TscAI CASTG 2 cut(s) 55, 94
TseI GCWGC 3 cut(s) 92, 219, 230
TspRI CASTG 2 cut(s) 55, 94
Tth111I GACNNNGTC 1 cut(s) 77
Vha464I CTTAAG 1 cut(s) 116
XapI RAATTY 2 cut(s) 251, 491
XmiI GTMKAC 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.