Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008629

Physical Location & Seq

Genomic Coordinates Reverse (-)

14546241 .. 14548119

Gene Structure 1879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGACGGGAGGAGGCTTATTGGAGGAAGCGCTAGGGCATCTCAGCCGCCGCGTTGTGCTCCTCGAAGACTGCGTCGACACTAGCGCCGCTTTCGTCCTCCACCACATTCTCAAGCGCTCTCTCTCTCAGTCTCCCCACTCCACCTCCAACGCCGTCGTTTTTGTTGCCTTCGCCCACCCCTTCTCTCACTACGATCGCATCCTCCGAAGACTCGGTTGCAATTTGGCTGCACAGAGGGACAATAATAGATTCTTTTTTCTTGACATGCTTATGGACTGCCCAGATGAAGGGAAAAACAGTGATTGTGGACTAATTGCTTTGTATGGGAAAATCCAAAAGACTGTAAGTGCCTTAGCTCAAGAGAACAACTGTGTCACCGTTATGATTGATGATATTTCCCTCATGGAGGTGGCTGCTAAGGGATCTACAAATCTTGTGCTAGACTTTCTGCATTACTCTCACACTTTAATATCAGAATCTGGTTGTTCTTTAATCATGCTCAATCACGAGGATATCTATTCAGGCACAGCGAAGCCTACCCTTATTTTACAGATGGAGTATCTAGCGGACATTCTGATAAGGGCAGAACCGTTGGCCACTGGGTTAGCCTCAGATGTGCACGGGCAGTTGACAGTTAAAAACAGGGGGATTTATGAAGGGCATGAGGGATTGAGAAACAAGTTGTCGAATTTCCAATTCAAAGTAAAGGAAAATGGTGTCGAGTATTTCTATCCCGGAAGCAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0006950 GO:0006979 GO:0008150 GO:0008284 GO:0009892 GO:0019222 GO:0031537 GO:0031538 GO:0032991 GO:0033588 GO:0042127 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048522 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0065007 GO:0080090 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELP6

Protein Analysis

251

Amino Acids

27.68

Weight (kDa)

5.86

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ELP6	PF09807	19 - 237	1.8e-27	Elongation complex protein 6
Elong_Iki1	PF10483	20 - 208	6.3e-07	Elongator subunit Iki1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10090
fragaria_vesca	FvH4_7g20560 FvH4_7g20560 FvH4_7g20560
malus_domestica	MD00G1166800.v1.1 MD01G1114500.v1.1 MD01G1114600.v1.1 MD07G1182600.v1.1
prunus_persica	Prupe.2G221200_v2.0.a1 Prupe.2G221200_v2.0.a1
pyrus_communis	pycom01g14350 pycom04g21470 pycom07g17510
rosa_chinensis	RchiOBHm_Chr1g0364441
rosa_laevigata	RLG00000027479
rosa_roxburghii	Rroxscaffold_4G00291830 Rroxscaffold_4G00292270
rosa_rugosa	Rorug01G0316100
rosa_samantha	Rh1AG324500 Rh1BG287200 Rh1CG303800 Rh1DG318700
rosa_wichuraiana	Rw1G028760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	54
AciI	CCGC	4 cut(s)	49, 52, 90, 569
AclWI	GGATC	1 cut(s)	433
AcoI	YGGCCR	1 cut(s)	597
AcsI	RAATTY	1 cut(s)	691
AfeI	AGCGCT	2 cut(s)	33, 119
AfiI	CCNNNNNNNGG	2 cut(s)	290, 409
AgsI	TTSAA	1 cut(s)	703
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Alw21I	GWGCWC	2 cut(s)	63, 624
Alw26I	GTCTC	1 cut(s)	138
Alw44I	GTGCAC	1 cut(s)	620
AlwI	GGATC	1 cut(s)	433
AlwNI	CAGNNNCTG	1 cut(s)	482
Aor51HI	AGCGCT	2 cut(s)	33, 119
AoxI	GGCC	1 cut(s)	597
ApaLI	GTGCAC	1 cut(s)	620
ApeKI	GCWGC	2 cut(s)	230, 416
ApoI	RAATTY	1 cut(s)	691
ArsI	GACNNNNNNTTYG	2 cut(s)	60, 92
AspLEI	GCGC	3 cut(s)	34, 89, 120
AsuC2I	CCSGG	1 cut(s)	738
AsuHPI	GGTGA	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	624
BalI	TGGCCA	1 cut(s)	599
BauI	CACGAG	1 cut(s)	509
BbsI	GAAGAC	2 cut(s)	75, 217
Bbv12I	GWGCWC	2 cut(s)	63, 624
BbvI	GCAGC	2 cut(s)	217, 403
BccI	CCATC	1 cut(s)	550
BceAI	ACGGC	1 cut(s)	140
BcnI	CCSGG	1 cut(s)	738
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	4 cut(s)	35, 84, 443, 566
BfoI	RGCGCY	3 cut(s)	35, 90, 121
BisI	GCNGC	5 cut(s)	49, 52, 90, 231, 417
BlsI	GCNGC	5 cut(s)	50, 53, 91, 232, 418
Bme1390I	CCNGG	1 cut(s)	738
BmrFI	CCNGG	1 cut(s)	738
BmrI	ACTGGG	1 cut(s)	612
BmsI	GCATC	2 cut(s)	49, 210
BmuI	ACTGGG	1 cut(s)	612
BpiI	GAAGAC	2 cut(s)	75, 217
Bpu10I	CCTNAGC	2 cut(s)	355, 420
BpuEI	CTTGAG	2 cut(s)	98, 345
BpuMI	CCSGG	1 cut(s)	738
BsaXI	ACNNNNNCTCC	2 cut(s)	131, 161
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 409
Bse1I	ACTGG	1 cut(s)	607
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	290, 409
BseMII	CTCAG	3 cut(s)	58, 143, 627
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	2 cut(s)	27, 53
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	2 cut(s)	217, 403
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	599
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	2 cut(s)	63, 624
BsiSI	CCGG	1 cut(s)	738
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	290, 409
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	1 cut(s)	599
Bsp1286I	GDGCHC	2 cut(s)	63, 624
Bsp143I	GATC	2 cut(s)	196, 425
BspACI	CCGC	4 cut(s)	49, 52, 90, 569
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	3 cut(s)	57, 142, 626
BspFNI	CGCG	1 cut(s)	54
BspPI	GGATC	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	607
BssMI	GATC	2 cut(s)	196, 425
BssSI	CACGAG	1 cut(s)	509
Bst2BI	CACGAG	1 cut(s)	509
Bst4CI	ACNGT	6 cut(s)	302, 346, 374, 382, 594, 637
BstDEI	CTNAG	5 cut(s)	44, 129, 355, 420, 613
BstENI	CCTNNNNNAGG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	3 cut(s)	35, 90, 121
BstHHI	GCGC	3 cut(s)	34, 89, 120
BstKTI	GATC	2 cut(s)	199, 428
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	2 cut(s)	196, 425
BstMCI	CGRYCG	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	736
BstSLI	GKGCMC	1 cut(s)	624
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	217, 403
BstV2I	GAAGAC	2 cut(s)	75, 217
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BsuRI	GGCC	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	307, 600
CaiI	CAGNNNCTG	1 cut(s)	482
CfoI	GCGC	3 cut(s)	34, 89, 120
CseI	GACGC	1 cut(s)	64
CviAII	CATG	4 cut(s)	268, 406, 499, 665
CviJI	RGCY	8 cut(s)	18, 48, 230, 359, 416, 538, 599, 611
CviKI_1	RGCY	8 cut(s)	18, 48, 230, 359, 416, 538, 599, 611
DdeI	CTNAG	5 cut(s)	44, 129, 355, 420, 613
DpnI	GATC	2 cut(s)	198, 427
DpnII	GATC	2 cut(s)	196, 425
EaeI	YGGCCR	1 cut(s)	597
Eco32I	GATATC	1 cut(s)	517
Eco47III	AGCGCT	2 cut(s)	33, 119
EcoNI	CCTNNNNNAGG	1 cut(s)	407
EcoRV	GATATC	1 cut(s)	517
FaeI	CATG	4 cut(s)	271, 409, 502, 668
FaiI	YATR	8 cut(s)	269, 275, 327, 386, 407, 500, 657, 666
FalI	AAGNNNNNCTT	1 cut(s)	733
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	267, 405, 498, 664
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	5 cut(s)	49, 52, 90, 231, 417
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	5 cut(s)	49, 52, 90, 231, 417
FspBI	CTAG	4 cut(s)	35, 84, 443, 566
GlaI	GCGC	3 cut(s)	33, 88, 119
GluI	GCNGC	5 cut(s)	49, 52, 90, 231, 417
HaeII	RGCGCY	3 cut(s)	35, 90, 121
HaeIII	GGCC	1 cut(s)	599
HapII	CCGG	1 cut(s)	738
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	3 cut(s)	34, 89, 120
Hin1II	CATG	4 cut(s)	271, 409, 502, 668
Hin6I	GCGC	3 cut(s)	32, 87, 118
HinP1I	GCGC	3 cut(s)	32, 87, 118
HincII	GTYRAC	2 cut(s)	79, 633
HindII	GTYRAC	2 cut(s)	79, 633
HinfI	GANTC	3 cut(s)	213, 252, 479
HpaII	CCGG	1 cut(s)	738
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	4 cut(s)	79, 311, 622, 633
Hpy188I	TCNGA	4 cut(s)	209, 478, 579, 616
Hpy188III	TCNNGA	3 cut(s)	263, 362, 509
Hpy8I	GTNNAC	4 cut(s)	79, 311, 622, 633
Hpy99I	CGWCG	2 cut(s)	80, 161
HpyAV	CCTTC	4 cut(s)	181, 193, 284, 653
HpyCH4III	ACNGT	6 cut(s)	302, 346, 374, 382, 594, 637
HpyCH4V	TGCA	4 cut(s)	222, 233, 454, 622
HpyF3I	CTNAG	5 cut(s)	44, 129, 355, 420, 613
Hsp92II	CATG	4 cut(s)	271, 409, 502, 668
HspAI	GCGC	3 cut(s)	32, 87, 118
Kzo9I	GATC	2 cut(s)	196, 425
LmnI	GCTCC	1 cut(s)	66
LpnPI	CCDG	5 cut(s)	297, 468, 510, 588, 631
Lsp1109I	GCAGC	2 cut(s)	217, 403
LweI	GCATC	2 cut(s)	49, 210
MaeI	CTAG	4 cut(s)	35, 84, 443, 566
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	198, 427
MboI	GATC	2 cut(s)	196, 425
MboII	GAAGA	2 cut(s)	80, 222
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	2 cut(s)	63, 624
MlsI	TGGCCA	1 cut(s)	599
MluCI	AATT	4 cut(s)	223, 315, 691, 698
MluNI	TGGCCA	1 cut(s)	599
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	174
Mox20I	TGGCCA	1 cut(s)	599
MscI	TGGCCA	1 cut(s)	599
MseI	TTAA	3 cut(s)	470, 494, 639
MslI	CAYNNNNRTG	3 cut(s)	272, 383, 410
Msp20I	TGGCCA	1 cut(s)	599
MspI	CCGG	1 cut(s)	738
MspR9I	CCNGG	1 cut(s)	738
MvnI	CGCG	1 cut(s)	54
NciI	CCSGG	1 cut(s)	738
NdeII	GATC	2 cut(s)	196, 425
NlaIII	CATG	4 cut(s)	271, 409, 502, 668
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 205
PfeI	GAWTC	2 cut(s)	252, 479
PflFI	GACNNNGTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	736
PkrI	GCNGC	5 cut(s)	50, 53, 91, 232, 418
Ple19I	CGATCG	1 cut(s)	199
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	425
PsyI	GACNNNGTC	1 cut(s)	74
PvuI	CGATCG	1 cut(s)	199
RseI	CAYNNNNRTG	3 cut(s)	272, 383, 410
SalI	GTCGAC	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	470, 494, 639
SatI	GCNGC	5 cut(s)	49, 52, 90, 231, 417
Sau3AI	GATC	2 cut(s)	196, 425
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	1 cut(s)	738
SduI	GDGCHC	2 cut(s)	63, 624
SetI	ASST	3 cut(s)	149, 361, 414
SfaNI	GCATC	2 cut(s)	49, 210
SmiMI	CAYNNNNRTG	3 cut(s)	272, 383, 410
SmlI	CTYRAG	2 cut(s)	113, 360
SmoI	CTYRAG	2 cut(s)	113, 360
Sse9I	AATT	4 cut(s)	223, 315, 691, 698
SsiI	CCGC	4 cut(s)	49, 52, 90, 569
SspMI	CTAG	4 cut(s)	35, 84, 443, 566
StyD4I	CCNGG	1 cut(s)	736
TaaI	ACNGT	6 cut(s)	302, 346, 374, 382, 594, 637
TaqI	TCGA	4 cut(s)	66, 78, 689, 723
TasI	AATT	4 cut(s)	223, 315, 691, 698
TauI	GCSGC	3 cut(s)	51, 54, 92
TfiI	GAWTC	2 cut(s)	252, 479
Tru1I	TTAA	3 cut(s)	470, 494, 639
Tru9I	TTAA	3 cut(s)	470, 494, 639
TscAI	CASTG	2 cut(s)	307, 607
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	2 cut(s)	230, 416
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	2 cut(s)	303, 672
TspRI	CASTG	2 cut(s)	307, 607
Tth111I	GACNNNGTC	1 cut(s)	74
VneI	GTGCAC	1 cut(s)	620
XagI	CCTNNNNNAGG	1 cut(s)	407
XapI	RAATTY	1 cut(s)	691
XceI	RCATGY	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	4 cut(s)	35, 84, 443, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.