Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014489

Physical Location & Seq

Genomic Coordinates Reverse (-)

6415120 .. 6416961

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGGTTCTTCGTCGAACGGAGGAGTGCCACCTGGTTTCCGGTTTCATCCGACGGACGAAGAGCTTCTCCATTACTACTTGAAGAAGAAAATCTCTTACCAAAAGTTTGAGATGGAAGTCATCAGAGAGGTTGACTTAAACAAGCTTGAGCCTTGGGATTTGCAAGAGAGATGCAAGATAGGATCAACACCACAAAACGAATGGTACTTCTTCAGCCACAAGGACAGGAAATATCCGACGGGGTCAAGGACCAACCGTGCTACTCATGCAGGGTTCTGGAAGGCGACGGGACGTGACAAGTGCATAAGGAACTCTTACAAAAAGATAGGAATGAGGAAGACACTTGTGTTCTACAAAGGTAGAGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTACCGTCTTGAAGACGCTGATGATCCTCAAGCCAACCCTAGTGAAGATGGATGGGTGGTATGTAGAGTGTTTATGAAGAAAAATTTGTTCAAGGTAGTAAATGAAGGTAGCTCAAGCATTAACTCATTGGACCAACACAACCATGACGCATCTAACAACAACCATGCACTTCAAGCTCGTAGCTTTATGCACCGAGACAGTCCATACCAGCTAGTACGTAACCACGGAGCCATGACATTCGAACTTAACAAGCCTGACCTTGCTCTTCATCAATACCCACCAATCTTCCACAAGCCACCTTCACTTGGATTTGACTACTCTTCAGGACTTGCAAGGGACAGTGAGAGTGCGGCTAGTGAAGGGTTACAATACCAGCAAGCGTGTGAGCCGGGTTTAGACGTTGGTACATGTGAGACAGTGGCTAGTCATAATCATCAACAAGGTCTAGGTGAATGGGCAATGATGGATAGACTTGTGACTTGTCACATGGGAAATGAAGATTCCTCTAGAGGGATTACGTATGAGGATGGTAACAACAATTCGTCCTCTGTGGTTCAGCCAGTTCCCGCGACGAACCAGCTAACATTGCGTAGTGAGATGGATTTCTGGGGTTATTCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042546 GO:0044085 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

341

Amino Acids

38.95

Weight (kDa)

6.76

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	17 - 90	3.4e-26	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10350 AT4G10350
fragaria_vesca	FvH4_2g00240
malus_domestica	MD05G1005600.v1.1 MD10G1000900.v1.1
prunus_persica	Prupe.8G002500_v2.0.a1
pyrus_communis	pycom05g00070
rosa_chinensis	RchiOBHm_Chr6g0249541
rosa_laevigata	RLG00000015571
rosa_multiflora	Rmu_ssc0000407.1_g000012
rosa_roxburghii	Rroxscaffold_7G00217580
rosa_rugosa	Rorug05G0493400
rosa_samantha	Rh6AG003100 Rh6BG007000 Rh6CG002100 Rh6DG002100
rosa_wichuraiana	Rw6G000360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	971
AciI	CCGC	2 cut(s)	752, 969
AclWI	GGATC	3 cut(s)	190, 398, 419
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	484
AcuI	CTGAAG	2 cut(s)	196, 708
AfaI	GTAC	4 cut(s)	206, 404, 618, 808
AfiI	CCNNNNNNNGG	2 cut(s)	707, 912
AflIII	ACRYGT	1 cut(s)	809
AgsI	TTSAA	4 cut(s)	82, 413, 493, 575
AjiI	CACGTC	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	8 cut(s)	64, 145, 365, 513, 578, 585, 613, 982
AluI	AGCT	8 cut(s)	64, 145, 365, 513, 578, 585, 613, 982
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	2 cut(s)	591, 809
AlwI	GGATC	3 cut(s)	190, 398, 419
AoxI	GGCC	1 cut(s)	373
ApoI	RAATTY	1 cut(s)	484
Asp700I	GAANNNNTTC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	249, 532
AsuC2I	CCSGG	1 cut(s)	792
AsuHPI	GGTGA	1 cut(s)	863
AsuII	TTCGAA	1 cut(s)	642
AvaII	GGWCC	2 cut(s)	249, 532
BalI	TGGCCA	1 cut(s)	375
BanII	GRGCYC	1 cut(s)	367
BbsI	GAAGAC	2 cut(s)	344, 420
Bbv12I	GWGCWC	1 cut(s)	367
BccI	CCATC	6 cut(s)	106, 443, 447, 859, 923, 994
BciT130I	CCWGG	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	792
BcoDI	GTCTC	2 cut(s)	591, 809
BfaI	CTAG	6 cut(s)	441, 614, 756, 825, 848, 909
BisI	GCNGC	1 cut(s)	753
BlsI	GCNGC	1 cut(s)	754
Bme1390I	CCNGG	2 cut(s)	33, 792
Bme18I	GGWCC	2 cut(s)	249, 532
BmgBI	CACGTC	1 cut(s)	293
BmgT120I	GGNCC	2 cut(s)	249, 532
BmiI	GGNNCC	1 cut(s)	631
BmrFI	CCNGG	2 cut(s)	33, 792
BmsI	GCATC	2 cut(s)	161, 560
BpiI	GAAGAC	2 cut(s)	344, 420
Bpu14I	TTCGAA	1 cut(s)	642
BpuEI	CTTGAG	3 cut(s)	167, 414, 499
BpuMI	CCSGG	1 cut(s)	792
BsaAI	YACGTR	2 cut(s)	620, 921
BsaJI	CCNNGG	2 cut(s)	152, 625
BsaWI	WCCGGW	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	2 cut(s)	707, 912
Bse1I	ACTGG	1 cut(s)	962
Bse3DI	GCAATG	2 cut(s)	867, 986
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	152, 625
BseGI	GGATG	3 cut(s)	46, 458, 934
BseLI	CCNNNNNNNGG	2 cut(s)	707, 912
BseMI	GCAATG	2 cut(s)	867, 986
BseNI	ACTGG	1 cut(s)	962
BseRI	GAGGAG	2 cut(s)	36, 357
Bsh1236I	CGCG	1 cut(s)	971
BshFI	GGCC	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	2 cut(s)	40, 791
BslFI	GGGAC	2 cut(s)	303, 752
BslI	CCNNNNNNNGG	2 cut(s)	707, 912
BsmAI	GTCTC	2 cut(s)	591, 809
BsmFI	GGGAC	2 cut(s)	303, 752
BsnI	GGCC	1 cut(s)	375
Bsp119I	TTCGAA	1 cut(s)	642
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	3 cut(s)	182, 390, 424
BspACI	CCGC	2 cut(s)	752, 969
BspANI	GGCC	1 cut(s)	375
BspFNI	CGCG	1 cut(s)	971
BspLI	GGNNCC	1 cut(s)	631
BspPI	GGATC	3 cut(s)	190, 398, 419
BspQI	GCTCTTC	2 cut(s)	54, 672
BspT104I	TTCGAA	1 cut(s)	642
BsrDI	GCAATG	2 cut(s)	867, 986
BsrI	ACTGG	1 cut(s)	962
BssECI	CCNNGG	2 cut(s)	152, 625
BssMI	GATC	3 cut(s)	182, 390, 424
BssT1I	CCWWGG	1 cut(s)	152
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	5 cut(s)	257, 407, 602, 743, 820
Bst6I	CTCTTC	3 cut(s)	54, 672, 727
BstBAI	YACGTR	2 cut(s)	620, 921
BstBI	TTCGAA	1 cut(s)	642
BstC8I	GCNNGC	1 cut(s)	780
BstDSI	CCRYGG	1 cut(s)	625
BstF5I	GGATG	3 cut(s)	46, 458, 934
BstFNI	CGCG	1 cut(s)	971
BstKTI	GATC	3 cut(s)	185, 393, 427
BstMAI	GTCTC	2 cut(s)	591, 809
BstMBI	GATC	3 cut(s)	182, 390, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 575, 988
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	813
BstSCI	CCNGG	2 cut(s)	31, 790
BstSNI	TACGTA	2 cut(s)	620, 921
BstUI	CGCG	1 cut(s)	971
BstV2I	GAAGAC	2 cut(s)	344, 420
BsuRI	GGCC	1 cut(s)	375
BtgI	CCRYGG	1 cut(s)	625
BtrI	CACGTC	1 cut(s)	293
BtsCI	GGATG	3 cut(s)	46, 458, 934
BtsIMutI	CAGTG	2 cut(s)	748, 825
Cac8I	GCNNGC	1 cut(s)	780
Cfr13I	GGNCC	2 cut(s)	249, 532
CseI	GACGC	2 cut(s)	425, 557
CsiI	ACCWGGT	1 cut(s)	31
Csp6I	GTAC	4 cut(s)	205, 403, 617, 807
CviAII	CATG	9 cut(s)	266, 371, 394, 398, 545, 566, 634, 810, 889
CviQI	GTAC	4 cut(s)	205, 403, 617, 807
DpnI	GATC	3 cut(s)	184, 392, 426
DpnII	GATC	3 cut(s)	182, 390, 424
EaeI	YGGCCR	1 cut(s)	373
Eam1104I	CTCTTC	3 cut(s)	54, 672, 727
EarI	CTCTTC	3 cut(s)	54, 672, 727
Ecl136II	GAGCTC	1 cut(s)	365
Eco105I	TACGTA	2 cut(s)	620, 921
Eco130I	CCWWGG	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	367
Eco47I	GGWCC	2 cut(s)	249, 532
Eco53kI	GAGCTC	1 cut(s)	365
Eco57I	CTGAAG	2 cut(s)	196, 708
EcoICRI	GAGCTC	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	152
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	152
FaeI	CATG	9 cut(s)	269, 374, 397, 401, 548, 569, 637, 813, 892
FalI	AAGNNNNNCTT	2 cut(s)	298, 330
FaqI	GGGAC	2 cut(s)	303, 752
FatI	CATG	9 cut(s)	265, 370, 393, 397, 544, 565, 633, 809, 888
FauI	CCCGC	1 cut(s)	976
Fnu4HI	GCNGC	1 cut(s)	753
FokI	GGATG	3 cut(s)	33, 465, 941
FriOI	GRGCYC	1 cut(s)	367
Fsp4HI	GCNGC	1 cut(s)	753
FspBI	CTAG	6 cut(s)	441, 614, 756, 825, 848, 909
GluI	GCNGC	1 cut(s)	753
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	2 cut(s)	40, 791
HgaI	GACGC	2 cut(s)	425, 557
Hin1II	CATG	9 cut(s)	269, 374, 397, 401, 548, 569, 637, 813, 892
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	1 cut(s)	902
HpaII	CCGG	2 cut(s)	40, 791
HphI	GGTGA	1 cut(s)	863
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	51, 125, 237
Hpy188III	TCNNGA	4 cut(s)	277, 410, 726, 909
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	5 cut(s)	16, 55, 241, 289, 976
HpyAV	CCTTC	4 cut(s)	274, 500, 711, 755
HpyCH4III	ACNGT	5 cut(s)	257, 407, 602, 743, 820
HpyCH4IV	ACGT	4 cut(s)	292, 619, 801, 920
HpyCH4V	TGCA	8 cut(s)	163, 174, 269, 303, 397, 569, 592, 734
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 575, 988
HpySE526I	ACGT	4 cut(s)	292, 619, 801, 920
Hsp92II	CATG	9 cut(s)	269, 374, 397, 401, 548, 569, 637, 813, 892
Kzo9I	GATC	3 cut(s)	182, 390, 424
LguI	GCTCTTC	2 cut(s)	54, 672
LmnI	GCTCC	2 cut(s)	370, 629
LweI	GCATC	2 cut(s)	161, 560
MabI	ACCWGGT	1 cut(s)	31
MaeI	CTAG	6 cut(s)	441, 614, 756, 825, 848, 909
MaeII	ACGT	4 cut(s)	292, 619, 801, 920
MaeIII	GTNAC	6 cut(s)	293, 620, 765, 877, 884, 932
MalI	GATC	3 cut(s)	184, 392, 426
MboI	GATC	3 cut(s)	182, 390, 424
MhlI	GDGCHC	1 cut(s)	367
MlsI	TGGCCA	1 cut(s)	375
MluCI	AATT	2 cut(s)	484, 940
MluNI	TGGCCA	1 cut(s)	375
MmeI	TCCRAC	2 cut(s)	74, 260
MnlI	CCTC	9 cut(s)	14, 121, 327, 378, 438, 905, 916, 919, 958
Mox20I	TGGCCA	1 cut(s)	375
Mph1103I	ATGCAT	1 cut(s)	399
MroXI	GAANNNNTTC	1 cut(s)	63
MscI	TGGCCA	1 cut(s)	375
MseI	TTAA	3 cut(s)	137, 522, 648
MslI	CAYNNNNRTG	1 cut(s)	543
Msp20I	TGGCCA	1 cut(s)	375
MspI	CCGG	2 cut(s)	40, 791
MspR9I	CCNGG	2 cut(s)	33, 792
MvaI	CCWGG	1 cut(s)	33
MvnI	CGCG	1 cut(s)	971
MwoI	GCNNNNNNNGC	3 cut(s)	266, 575, 988
NciI	CCSGG	1 cut(s)	792
NdeII	GATC	3 cut(s)	182, 390, 424
NlaIII	CATG	9 cut(s)	269, 374, 397, 401, 548, 569, 637, 813, 892
NlaIV	GGNNCC	1 cut(s)	631
NmuCI	GTSAC	3 cut(s)	293, 877, 884
NsiI	ATGCAT	1 cut(s)	399
NspI	RCATGY	1 cut(s)	813
NspV	TTCGAA	1 cut(s)	642
PciI	ACATGT	1 cut(s)	809
PciSI	GCTCTTC	2 cut(s)	54, 672
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	902
PflFI	GACNNNGTC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	754
Ppu21I	YACGTR	2 cut(s)	620, 921
PscI	ACATGT	1 cut(s)	809
Psp124BI	GAGCTC	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	1 cut(s)	631
PspPI	GGNCC	2 cut(s)	249, 532
PsyI	GACNNNGTC	1 cut(s)	241
RsaI	GTAC	4 cut(s)	206, 404, 618, 808
RsaNI	GTAC	4 cut(s)	205, 403, 617, 807
RseI	CAYNNNNRTG	1 cut(s)	543
SacI	GAGCTC	1 cut(s)	367
SapI	GCTCTTC	2 cut(s)	54, 672
SaqAI	TTAA	3 cut(s)	137, 522, 648
SatI	GCNGC	1 cut(s)	753
Sau3AI	GATC	3 cut(s)	182, 390, 424
Sau96I	GGNCC	2 cut(s)	249, 532
ScrFI	CCNGG	2 cut(s)	33, 792
SduI	GDGCHC	1 cut(s)	367
SexAI	ACCWGGT	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	161, 560
SfuI	TTCGAA	1 cut(s)	642
SinI	GGWCC	2 cut(s)	249, 532
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	3 cut(s)	146, 429, 514
SmoI	CTYRAG	3 cut(s)	146, 429, 514
SnaBI	TACGTA	2 cut(s)	620, 921
Sse9I	AATT	2 cut(s)	484, 940
SsiI	CCGC	2 cut(s)	752, 969
SspMI	CTAG	6 cut(s)	441, 614, 756, 825, 848, 909
SstI	GAGCTC	1 cut(s)	367
StyD4I	CCNGG	2 cut(s)	31, 790
StyI	CCWWGG	1 cut(s)	152
TaaI	ACNGT	5 cut(s)	257, 407, 602, 743, 820
TaiI	ACGT	4 cut(s)	295, 622, 804, 923
TaqI	TCGA	2 cut(s)	14, 642
TasI	AATT	2 cut(s)	484, 940
TauI	GCSGC	1 cut(s)	755
TfiI	GAWTC	1 cut(s)	902
Tru1I	TTAA	3 cut(s)	137, 522, 648
Tru9I	TTAA	3 cut(s)	137, 522, 648
TscAI	CASTG	2 cut(s)	748, 825
TseFI	GTSAC	3 cut(s)	293, 877, 884
Tsp45I	GTSAC	3 cut(s)	293, 877, 884
TspDTI	ATGAA	5 cut(s)	35, 491, 519, 659, 912
TspGWI	ACGGA	3 cut(s)	33, 68, 642
TspRI	CASTG	2 cut(s)	748, 825
Tth111I	GACNNNGTC	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	249, 532
XapI	RAATTY	1 cut(s)	484
XbaI	TCTAGA	1 cut(s)	908
XceI	RCATGY	1 cut(s)	813
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	6 cut(s)	441, 614, 756, 825, 848, 909
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.