FvH4_2g00240

No apical meristem (NAM) protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
361407 .. 364086
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00240.t1

Sequence Viewer

Length: 1227 bp
ATGGCAACATCCAGTGGTGGTGTTCCCCCAGGGTTTCGATTCCACCCTACCGACGAAGAGCTGCTTCACTACTATTTGAAGAAGAAGGTGTCCTTTCAGAAGTTTGACATGGAGGTCATCAGAGAGGTCGACTTGAACAAGATGGAACCTTGGGAATTGCAAGAAAGATGTAGAATTGGGTCGACTCCGCAAAATGAGTGGTACTTCTTTAGCCACAAAGACAGGAAGTATCCAACAGGGTCAAGGACGAATAGGGCAACAAACGCTGGGTTTTGGAAGGCAACAGGGAGAGACAAGTGCATCAGAAACACATACAAGAAGATCGGAATGAGGAAAACCCTGGTTTTCTATAGAGGACGAGCCCCTCATGGCCAAAAAACTGACTGGATTATGCACGAGTACCGCCTTGAAGATGGCGATGATCCTCAAGGAAATTTATCTAGTGAAGATGGATGGGTGATATGTAGGGTGTTTAAGAAGAAGAATTTGTTCAAGGTAACTGGGAATAATGAAGGAGGAAGCTCAAGCATGAACTCATCAGACCATCATCATCATCAACAGCTGACTATGAACACCAATCAATTGCAAGCTCGCACCTTCATGCATGCACATAGCAGCAGGTCAGACAATCAGTACCTACTACGCCAACAAGCCTTTGAACTAAACAGACCTCATGATCACGATCAAGATCAGGATCAGTTGCCACCCTCCCTCCACTATGCCCACCTCAATTTGCAGCCTCCTCCTCAATACTCACTTTTCCACTCTCAGGCCCTTAACATACCAACAACTAACTCCCACAAAACCCTAGCTGCATATAATGACTATTCTGCCCTCCCTTCCGACTCGTCACCTGGCCATGGCATGGTTAAGCAGCTCATGACCAACCCCAGAGACTGCGAGAGCACTGGCAGCGAGAGCCTCCGGTACCAAGCGTGCGAACCGGGACTGGAAGTTAACGACAGCGCGTGCGAACCAAATCAGCAAACGATGGTTAATGCAGGAGGAAGATCATCAGATGATCAAGGCATGAGTGAATGGGCTATGCTGGACCGGCTTGTGACTTCTCATCTTGGAAATGAAGACTCGACGTCCAAAGGTGGAGCTTCTGCGAGGTATGATCAGGACGGGAATGGATCATCTACTGTCAACCAGATTAACCAGCAGCAACAGCAACAGCAGCTCTCTTTGCGTGGAGAGATGGATTTTTGGGGCTACGCAAAATAG

Protein Analysis

409

Amino Acids

46.51

Weight (kDa)

6.68

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 136 2.2e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10350 AT4G10350
fragaria_vesca FvH4_2g00240
malus_domestica MD05G1005600.v1.1 MD10G1000900.v1.1
prunus_persica Prupe.8G002500_v2.0.a1
pyrus_communis pycom05g00070
rosa_chinensis RchiOBHm_Chr6g0249541
rosa_laevigata RLG00000015571
rosa_multiflora Rmu_ssc0000407.1_g000012
rosa_roxburghii Rroxscaffold_7G00217580
rosa_rugosa Rorug05G0493400
rosa_samantha Rh6AG003100 Rh6BG007000 Rh6CG002100 Rh6DG002100
rosa_wichuraiana Rw6G000360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
AatII GACGTC 1 cut(s) 1094
Acc36I ACCTGC 1 cut(s) 609
Acc65I GGTACC 1 cut(s) 927
AccB1I GGYRCC 1 cut(s) 927
AccB7I CCANNNNNTGG 1 cut(s) 865
AccI GTMKAC 2 cut(s) 129, 182
AccII CGCG 1 cut(s) 968
AciI CCGC 2 cut(s) 188, 403
AclWI GGATC 3 cut(s) 416, 702, 1144
AcoI YGGCCR 2 cut(s) 370, 856
AcsI RAATTY 2 cut(s) 433, 484
AcyI GRCGYC 1 cut(s) 1091
AfaI GTAC 4 cut(s) 203, 401, 635, 929
AfiI CCNNNNNNNGG 3 cut(s) 769, 860, 865
AgsI TTSAA 5 cut(s) 79, 136, 410, 493, 659
AhdI GACNNNNNGTC 1 cut(s) 1090
AjnI CCWGG 3 cut(s) 28, 339, 853
AluBI AGCT 8 cut(s) 61, 522, 562, 590, 812, 877, 1106, 1183
AluI AGCT 8 cut(s) 61, 522, 562, 590, 812, 877, 1106, 1183
Alw21I GWGCWC 1 cut(s) 908
Alw26I GTCTC 2 cut(s) 285, 888
AlwI GGATC 3 cut(s) 416, 702, 1144
AlwNI CAGNNNCTG 1 cut(s) 897
AoxI GGCC 3 cut(s) 370, 771, 856
ApeKI GCWGC 8 cut(s) 61, 615, 736, 812, 874, 912, 1165, 1180
ApoI RAATTY 2 cut(s) 433, 484
Asp700I GAANNNNTTC 1 cut(s) 488
Asp718I GGTACC 1 cut(s) 927
AspLEI GCGC 1 cut(s) 968
AspS9I GGNCC 2 cut(s) 772, 1051
AsuC2I CCSGG 1 cut(s) 945
AsuHPI GGTGA 2 cut(s) 469, 843
AvaII GGWCC 1 cut(s) 1051
BalI TGGCCA 2 cut(s) 372, 858
BanI GGYRCC 1 cut(s) 927
BanII GRGCYC 1 cut(s) 364
BauI CACGAG 1 cut(s) 395
BbsI GAAGAC 1 cut(s) 1089
Bbv12I GWGCWC 1 cut(s) 908
BbvI GCAGC 8 cut(s) 48, 627, 748, 799, 886, 924, 1177, 1192
BccI CCATC 7 cut(s) 136, 407, 443, 447, 552, 985, 1195
BciT130I CCWGG 3 cut(s) 30, 341, 855
BciVI GTATCC 1 cut(s) 240
BclI TGATCA 3 cut(s) 676, 1021, 1120
BcnI CCSGG 1 cut(s) 945
BcoDI GTCTC 2 cut(s) 285, 888
BfaI CTAG 2 cut(s) 441, 809
BfmI CTRYAG 1 cut(s) 349
BfuAI ACCTGC 1 cut(s) 609
BfuI GTATCC 1 cut(s) 240
BisI GCNGC 8 cut(s) 62, 616, 737, 813, 875, 913, 1166, 1181
BlsI GCNGC 8 cut(s) 63, 617, 738, 814, 876, 914, 1167, 1182
Bme1390I CCNGG 4 cut(s) 30, 341, 855, 945
Bme18I GGWCC 1 cut(s) 1051
BmeRI GACNNNNNGTC 1 cut(s) 1090
BmgT120I GGNCC 2 cut(s) 772, 1051
BmiI GGNNCC 2 cut(s) 147, 929
BmrFI CCNGG 4 cut(s) 30, 341, 855, 945
BmrI ACTGGG 1 cut(s) 510
BmsI GCATC 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 510
BpiI GAAGAC 1 cut(s) 1089
BpuEI CTTGAG 2 cut(s) 411, 508
BpuMI CCSGG 1 cut(s) 945
BsaBI GATNNNNATC 3 cut(s) 681, 687, 693
BsaHI GRCGYC 1 cut(s) 1091
BsaJI CCNNGG 5 cut(s) 28, 29, 149, 339, 859
BsaWI WCCGGW 1 cut(s) 924
BsaXI ACNNNNNCTCC 2 cut(s) 696, 726
Bsc4I CCNNNNNNNGG 3 cut(s) 769, 860, 865
Bse118I RCCGGY 1 cut(s) 1053
Bse1I ACTGG 5 cut(s) 12, 389, 505, 913, 954
Bse8I GATNNNNATC 3 cut(s) 681, 687, 693
BseBI CCWGG 3 cut(s) 30, 341, 855
BseDI CCNNGG 5 cut(s) 28, 29, 149, 339, 859
BseGI GGATG 2 cut(s) 8, 458
BseJI GATNNNNATC 3 cut(s) 681, 687, 693
BseLI CCNNNNNNNGG 3 cut(s) 769, 860, 865
BseMII CTCAG 1 cut(s) 782
BseNI ACTGG 5 cut(s) 12, 389, 505, 913, 954
BseRI GAGGAG 2 cut(s) 732, 735
BseXI GCAGC 8 cut(s) 48, 627, 748, 799, 886, 924, 1177, 1192
BseYI CCCAGC 1 cut(s) 266
Bsh1236I CGCG 1 cut(s) 968
BshFI GGCC 3 cut(s) 372, 773, 858
BshNI GGYRCC 1 cut(s) 927
BsiHKAI GWGCWC 1 cut(s) 908
BsiSI CCGG 3 cut(s) 925, 944, 1054
BslFI GGGAC 1 cut(s) 960
BslI CCNNNNNNNGG 3 cut(s) 769, 860, 865
BsmAI GTCTC 2 cut(s) 285, 888
BsmFI GGGAC 1 cut(s) 960
BsnI GGCC 3 cut(s) 372, 773, 858
Bsp1286I GDGCHC 2 cut(s) 364, 908
Bsp19I CCATGG 1 cut(s) 859
BspACI CCGC 2 cut(s) 188, 403
BspANI GGCC 3 cut(s) 372, 773, 858
BspCNI CTCAG 1 cut(s) 781
BspFNI CGCG 1 cut(s) 968
BspHI TCATGA 2 cut(s) 673, 879
BspLI GGNNCC 2 cut(s) 147, 929
BspMI ACCTGC 1 cut(s) 609
BspPI GGATC 3 cut(s) 416, 702, 1144
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 927
BsrFI RCCGGY 1 cut(s) 1053
BsrI ACTGG 5 cut(s) 12, 389, 505, 913, 954
BssAI RCCGGY 1 cut(s) 1053
BssECI CCNNGG 5 cut(s) 28, 29, 149, 339, 859
BssNI GRCGYC 1 cut(s) 1091
BssSI CACGAG 1 cut(s) 395
BssT1I CCWWGG 2 cut(s) 149, 859
Bst2BI CACGAG 1 cut(s) 395
Bst2UI CCWGG 3 cut(s) 30, 341, 855
Bst4CI ACNGT 1 cut(s) 1147
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 1 cut(s) 1091
BstC8I GCNNGC 5 cut(s) 588, 592, 606, 937, 970
BstDEI CTNAG 1 cut(s) 768
BstDSI CCRYGG 1 cut(s) 859
BstF5I GGATG 2 cut(s) 8, 458
BstFNI CGCG 1 cut(s) 968
BstHHI GCGC 1 cut(s) 968
BstMAI GTCTC 2 cut(s) 285, 888
BstMWI GCNNNNNNNGC 7 cut(s) 263, 912, 918, 1054, 1171, 1180, 1189
BstNI CCWGG 3 cut(s) 30, 341, 855
BstNSI RCATGY 1 cut(s) 608
BstSCI CCNGG 4 cut(s) 28, 339, 853, 943
BstSFI CTRYAG 1 cut(s) 349
BstUI CGCG 1 cut(s) 968
BstV1I GCAGC 8 cut(s) 48, 627, 748, 799, 886, 924, 1177, 1192
BstV2I GAAGAC 1 cut(s) 1089
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 3 cut(s) 372, 773, 858
BtgI CCRYGG 1 cut(s) 859
BtgZI GCGATG 1 cut(s) 432
BtsCI GGATG 2 cut(s) 8, 458
BtsIMutI CAGTG 2 cut(s) 19, 906
BveI ACCTGC 1 cut(s) 609
Cac8I GCNNGC 5 cut(s) 588, 592, 606, 937, 970
CaiI CAGNNNCTG 1 cut(s) 897
CciI TCATGA 2 cut(s) 673, 879
CfoI GCGC 1 cut(s) 968
Cfr10I RCCGGY 1 cut(s) 1053
Cfr13I GGNCC 2 cut(s) 772, 1051
Csp6I GTAC 4 cut(s) 202, 400, 634, 928
CspCI CAANNNNNGTGG 2 cut(s) 179, 214
CviQI GTAC 4 cut(s) 202, 400, 634, 928
DdeI CTNAG 1 cut(s) 768
DrdI GACNNNNNNGTC 1 cut(s) 113
DriI GACNNNNNGTC 1 cut(s) 1090
DseDI GACNNNNNNGTC 1 cut(s) 113
EaeI YGGCCR 2 cut(s) 370, 856
Eam1104I CTCTTC 1 cut(s) 51
Eam1105I GACNNNNNGTC 1 cut(s) 1090
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 149, 859
Eco24I GRGCYC 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 1051
EcoO109I RGGNCCY 1 cut(s) 772
EcoRII CCWGG 3 cut(s) 28, 339, 853
EcoT14I CCWWGG 2 cut(s) 149, 859
EcoT22I ATGCAT 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 2 cut(s) 149, 859
FalI AAGNNNNNCTT 4 cut(s) 48, 80, 77, 109
FaqI GGGAC 1 cut(s) 960
FbaI TGATCA 3 cut(s) 676, 1021, 1120
FblI GTMKAC 2 cut(s) 129, 182
Fnu4HI GCNGC 8 cut(s) 62, 616, 737, 813, 875, 913, 1166, 1181
FokI GGATG 1 cut(s) 465
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 8 cut(s) 62, 616, 737, 813, 875, 913, 1166, 1181
FspBI CTAG 2 cut(s) 441, 809
GlaI GCGC 1 cut(s) 967
GluI GCNGC 8 cut(s) 62, 616, 737, 813, 875, 913, 1166, 1181
GsaI CCCAGC 1 cut(s) 270
HaeIII GGCC 3 cut(s) 372, 773, 858
HapII CCGG 3 cut(s) 925, 944, 1054
HhaI GCGC 1 cut(s) 968
Hin1I GRCGYC 1 cut(s) 1091
Hin6I GCGC 1 cut(s) 966
HinP1I GCGC 1 cut(s) 966
HincII GTYRAC 4 cut(s) 130, 183, 958, 1150
HindII GTYRAC 4 cut(s) 130, 183, 958, 1150
HinfI GANTC 4 cut(s) 39, 184, 845, 1085
HpaI GTTAAC 1 cut(s) 958
HpaII CCGG 3 cut(s) 925, 944, 1054
HphI GGTGA 2 cut(s) 469, 843
Hpy166II GTNNAC 4 cut(s) 130, 183, 958, 1150
Hpy188I TCNGA 8 cut(s) 99, 122, 305, 326, 541, 625, 844, 1018
Hpy188III TCNNGA 6 cut(s) 674, 680, 686, 692, 880, 1124
Hpy8I GTNNAC 4 cut(s) 130, 183, 958, 1150
Hpy99I CGWCG 2 cut(s) 56, 1093
HpyAV CCTTC 5 cut(s) 79, 271, 506, 607, 849
HpyCH4III ACNGT 1 cut(s) 1147
HpyCH4IV ACGT 1 cut(s) 1091
HpyCH4V TGCA 9 cut(s) 160, 300, 394, 586, 604, 608, 736, 815, 1001
HpyF10VI GCNNNNNNNGC 7 cut(s) 263, 912, 918, 1054, 1171, 1180, 1189
HpyF3I CTNAG 1 cut(s) 768
HpySE526I ACGT 1 cut(s) 1091
Hsp92I GRCGYC 1 cut(s) 1091
HspAI GCGC 1 cut(s) 966
KpnI GGTACC 1 cut(s) 931
Ksp22I TGATCA 3 cut(s) 676, 1021, 1120
KspAI GTTAAC 1 cut(s) 958
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 1 cut(s) 1103
Lsp1109I GCAGC 8 cut(s) 48, 627, 748, 799, 886, 924, 1177, 1192
LweI GCATC 1 cut(s) 309
MaeI CTAG 2 cut(s) 441, 809
MaeII ACGT 1 cut(s) 1091
MaeIII GTNAC 3 cut(s) 496, 849, 1060
MfeI CAATTG 1 cut(s) 581
MhlI GDGCHC 2 cut(s) 364, 908
MlsI TGGCCA 2 cut(s) 372, 858
MluCI AATT 6 cut(s) 155, 174, 433, 484, 581, 730
MluNI TGGCCA 2 cut(s) 372, 858
MlyI GAGTC 3 cut(s) 178, 839, 1079
MmeI TCCRAC 2 cut(s) 257, 867
Mox20I TGGCCA 2 cut(s) 372, 858
Mph1103I ATGCAT 1 cut(s) 606
MroXI GAANNNNTTC 1 cut(s) 488
MscI TGGCCA 2 cut(s) 372, 858
MseI TTAA 6 cut(s) 474, 777, 870, 957, 996, 1158
MslI CAYNNNNRTG 1 cut(s) 599
Msp20I TGGCCA 2 cut(s) 372, 858
MspA1I CMGCKG 1 cut(s) 562
MspI CCGG 3 cut(s) 925, 944, 1054
MspR9I CCNGG 4 cut(s) 30, 341, 855, 945
MunI CAATTG 1 cut(s) 581
MvaI CCWGG 3 cut(s) 30, 341, 855
MvnI CGCG 1 cut(s) 968
MwoI GCNNNNNNNGC 7 cut(s) 263, 912, 918, 1054, 1171, 1180, 1189
NciI CCSGG 1 cut(s) 945
NcoI CCATGG 1 cut(s) 859
NlaIV GGNNCC 2 cut(s) 147, 929
NmuCI GTSAC 2 cut(s) 849, 1060
NsiI ATGCAT 1 cut(s) 606
NspI RCATGY 1 cut(s) 608
PaeI GCATGC 1 cut(s) 608
PagI TCATGA 2 cut(s) 673, 879
PasI CCCWGGG 1 cut(s) 29
PciSI GCTCTTC 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 488
PfeI GAWTC 1 cut(s) 39
PflMI CCANNNNNTGG 1 cut(s) 865
PkrI GCNGC 8 cut(s) 63, 617, 738, 814, 876, 914, 1167, 1182
PleI GAGTC 3 cut(s) 178, 839, 1079
PpsI GAGTC 3 cut(s) 178, 839, 1079
Psp6I CCWGG 3 cut(s) 28, 339, 853
PspFI CCCAGC 1 cut(s) 266
PspGI CCWGG 3 cut(s) 28, 339, 853
PspN4I GGNNCC 2 cut(s) 147, 929
PspPI GGNCC 2 cut(s) 772, 1051
PstNI CAGNNNCTG 1 cut(s) 897
PvuII CAGCTG 1 cut(s) 562
RsaI GTAC 4 cut(s) 203, 401, 635, 929
RsaNI GTAC 4 cut(s) 202, 400, 634, 928
RseI CAYNNNNRTG 1 cut(s) 599
SalI GTCGAC 2 cut(s) 128, 181
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 6 cut(s) 474, 777, 870, 957, 996, 1158
SatI GCNGC 8 cut(s) 62, 616, 737, 813, 875, 913, 1166, 1181
Sau96I GGNCC 2 cut(s) 772, 1051
SchI GAGTC 3 cut(s) 178, 839, 1079
ScrFI CCNGG 4 cut(s) 30, 341, 855, 945
SduI GDGCHC 2 cut(s) 364, 908
SfaNI GCATC 1 cut(s) 309
SfcI CTRYAG 1 cut(s) 349
SinI GGWCC 1 cut(s) 1051
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 2 cut(s) 426, 523
SmoI CTYRAG 2 cut(s) 426, 523
SphI GCATGC 1 cut(s) 608
Sse9I AATT 6 cut(s) 155, 174, 433, 484, 581, 730
SsiI CCGC 2 cut(s) 188, 403
SspMI CTAG 2 cut(s) 441, 809
StyD4I CCNGG 4 cut(s) 28, 339, 853, 943
StyI CCWWGG 2 cut(s) 149, 859
TaaI ACNGT 1 cut(s) 1147
TaiI ACGT 1 cut(s) 1094
TaqI TCGA 4 cut(s) 37, 129, 182, 1088
TasI AATT 6 cut(s) 155, 174, 433, 484, 581, 730
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 6 cut(s) 474, 777, 870, 957, 996, 1158
Tru9I TTAA 6 cut(s) 474, 777, 870, 957, 996, 1158
TscAI CASTG 2 cut(s) 19, 913
TseFI GTSAC 2 cut(s) 849, 1060
TseI GCWGC 8 cut(s) 61, 615, 736, 812, 874, 912, 1165, 1180
Tsp45I GTSAC 2 cut(s) 849, 1060
TspDTI ATGAA 5 cut(s) 525, 545, 584, 589, 1095
TspRI CASTG 2 cut(s) 19, 913
Van91I CCANNNNNTGG 1 cut(s) 865
VpaK11BI GGWCC 1 cut(s) 1051
XapI RAATTY 2 cut(s) 433, 484
XceI RCATGY 1 cut(s) 608
XmiI GTMKAC 2 cut(s) 129, 182
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 2 cut(s) 441, 809
ZraI GACGTC 1 cut(s) 1092
Zsp2I ATGCAT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.