Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014489

Physical Location & Seq

Genomic Coordinates Forward (+)

336041 .. 338507

Gene Structure 2467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG002100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGAGGTCATCAGAGAGGTCGACTTGAACAAGATGGAACCTTGGGATTTGCAAGAGAGATGTAGAATTGGGTCGACTCCGCAAAATGAGTGGTACTTTTTCAGCCACAAAGACAGGAAGTACCCGACAGGGTCAAGGACGAATAGGGCAACAAATGCTGGGTTTTGGAAGGCAACAGGGAGAGACAAGTGCATCAGAAACACCTATAAGAAGATTGGAATGAGGAAAACCCTGGTTTTCTACAGAGGAAGAGCACCCCATGGCCAAAAGACTGATTGGATTATGCATGAGTACCGCCTTGAAGATGGCGATGATCCTCAAGGAAATTTATCTAGTGAAGATGGATGGGTGATATGTAGGGTGTTTAAAAAGAAGAATTTATTCAAGGTAACTGGGAATAATGAAGGAGGAAGCTCTAGCATGAACTCATCAGATCATCACCATCATCAACAGCTGACTATGAACACCACCCAATTGCAAGCTCGCACCTTCATGCATACGCATAGCAGCAGATCAGATACCAACCAATACTTACTACGCCAACAAGCCTTTGAACTAAACAGACCTCATGATCATGATCAAGATCAGGATCAGTTGCCACCCGCCCTCCACTATGCCCACCTCAATTTGCAGCCGCCTCCTCAATACTCTCTTTTCCACTCTCAAGCCCTTAATGTACCAACTAACTCCCACAAAACCCTTGCAGCCTATAATGACTATTCTACCCTCCCTTCCGATTCGTCACCTGGCCATGGCATGGTCAAGCAGCTCATGACCAACCCCAGAGACTGCGAGAGCACTGGCAGTGAGAGCCTCCGGTACCAAGCTTGTGAACCGGGCTTGGAAGTTAACGACACCACGTGCGAAACAAATCAGCAAGCGATAGTTAATGCAGGAGGAAGATCATCAGATGATCAAGGCATGAGCGAATGGGCTATGCTGGACCGGCTTGTAACTTCTCATCTTGGAAATGAAGATTCAACGTCCAAAGGTGGAGCTTCTGCAGGTGCGAGGTATGATCAGGACGGGAATGGATCCTCCACTGTCAACCAGATTAACCAGCAGCAGCAACAGCAGCTCTCTTTGCGTGGAGAGATGGATTTTTGGGGCTATGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042546 GO:0043565 GO:0044085 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

373

Amino Acids

42.38

Weight (kDa)

6.49

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	2 - 100	1.1e-32	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10350 AT4G10350
fragaria_vesca	FvH4_2g00240
malus_domestica	MD05G1005600.v1.1 MD10G1000900.v1.1
prunus_persica	Prupe.8G002500_v2.0.a1
pyrus_communis	pycom05g00070
rosa_chinensis	RchiOBHm_Chr6g0249541
rosa_laevigata	RLG00000015571
rosa_multiflora	Rmu_ssc0000407.1_g000012
rosa_roxburghii	Rroxscaffold_7G00217580
rosa_rugosa	Rorug05G0493400
rosa_samantha	Rh6AG003100 Rh6BG007000 Rh6CG002100 Rh6DG002100
rosa_wichuraiana	Rw6G000360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	995
Acc36I	ACCTGC	1 cut(s)	995
Acc65I	GGTACC	1 cut(s)	819
AccB1I	GGYRCC	1 cut(s)	819
AccB7I	CCANNNNNTGG	1 cut(s)	757
AccI	GTMKAC	2 cut(s)	21, 74
AciI	CCGC	4 cut(s)	80, 295, 603, 635
AclWI	GGATC	4 cut(s)	308, 597, 1029, 1042
AcoI	YGGCCR	2 cut(s)	262, 748
AcsI	RAATTY	2 cut(s)	325, 376
AcvI	CACGTG	1 cut(s)	861
AdeI	CACNNNGTG	1 cut(s)	861
AfaI	GTAC	5 cut(s)	95, 122, 293, 678, 821
AfiI	CCNNNNNNNGG	2 cut(s)	752, 757
AgsI	TTSAA	5 cut(s)	28, 302, 385, 554, 981
AjnI	CCWGG	2 cut(s)	231, 745
AluBI	AGCT	7 cut(s)	414, 454, 482, 769, 827, 998, 1078
AluI	AGCT	7 cut(s)	414, 454, 482, 769, 827, 998, 1078
Alw21I	GWGCWC	2 cut(s)	256, 800
Alw26I	GTCTC	2 cut(s)	177, 780
AlwI	GGATC	4 cut(s)	308, 597, 1029, 1042
AlwNI	CAGNNNCTG	1 cut(s)	789
AoxI	GGCC	2 cut(s)	262, 748
ApeKI	GCWGC	7 cut(s)	507, 631, 704, 766, 1063, 1066, 1075
ApoI	RAATTY	2 cut(s)	325, 376
Asp700I	GAANNNNTTC	1 cut(s)	380
Asp718I	GGTACC	1 cut(s)	819
AspS9I	GGNCC	1 cut(s)	943
AsuC2I	CCSGG	1 cut(s)	837
AsuHPI	GGTGA	3 cut(s)	361, 431, 735
AvaII	GGWCC	1 cut(s)	943
BalI	TGGCCA	2 cut(s)	264, 750
BamHI	GGATCC	1 cut(s)	1034
BanI	GGYRCC	1 cut(s)	819
BbrPI	CACGTG	1 cut(s)	861
Bbv12I	GWGCWC	2 cut(s)	256, 800
BbvI	GCAGC	7 cut(s)	519, 643, 716, 778, 1075, 1078, 1087
BccI	CCATC	6 cut(s)	28, 299, 335, 339, 450, 1090
BciT130I	CCWGG	2 cut(s)	233, 747
BclI	TGATCA	4 cut(s)	571, 577, 913, 1018
BcnI	CCSGG	1 cut(s)	837
BcoDI	GTCTC	2 cut(s)	177, 780
BfaI	CTAG	2 cut(s)	333, 417
BfmI	CTRYAG	2 cut(s)	241, 1002
BfuAI	ACCTGC	1 cut(s)	995
BisI	GCNGC	8 cut(s)	508, 632, 635, 705, 767, 1064, 1067, 1076
BlsI	GCNGC	8 cut(s)	509, 633, 636, 706, 768, 1065, 1068, 1077
Bme1390I	CCNGG	3 cut(s)	233, 747, 837
Bme18I	GGWCC	1 cut(s)	943
BmgT120I	GGNCC	1 cut(s)	943
BmiI	GGNNCC	3 cut(s)	39, 821, 1036
BmrFI	CCNGG	3 cut(s)	233, 747, 837
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	303, 648
BpuMI	CCSGG	1 cut(s)	837
BsaAI	YACGTR	1 cut(s)	861
BsaBI	GATNNNNATC	3 cut(s)	576, 582, 588
BsaJI	CCNNGG	4 cut(s)	41, 231, 259, 751
BsaWI	WCCGGW	1 cut(s)	816
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	2 cut(s)	752, 757
Bse118I	RCCGGY	1 cut(s)	945
Bse1I	ACTGG	2 cut(s)	397, 805
Bse8I	GATNNNNATC	3 cut(s)	576, 582, 588
BseBI	CCWGG	2 cut(s)	233, 747
BseDI	CCNNGG	4 cut(s)	41, 231, 259, 751
BseGI	GGATG	1 cut(s)	350
BseJI	GATNNNNATC	3 cut(s)	576, 582, 588
BseLI	CCNNNNNNNGG	2 cut(s)	752, 757
BseNI	ACTGG	2 cut(s)	397, 805
BseRI	GAGGAG	1 cut(s)	630
BseXI	GCAGC	7 cut(s)	519, 643, 716, 778, 1075, 1078, 1087
BseYI	CCCAGC	1 cut(s)	158
BshFI	GGCC	2 cut(s)	264, 750
BshNI	GGYRCC	1 cut(s)	819
BsiHKAI	GWGCWC	2 cut(s)	256, 800
BsiSI	CCGG	3 cut(s)	817, 836, 946
BslI	CCNNNNNNNGG	2 cut(s)	752, 757
BsmAI	GTCTC	2 cut(s)	177, 780
BsnI	GGCC	2 cut(s)	264, 750
Bsp1286I	GDGCHC	2 cut(s)	256, 800
Bsp19I	CCATGG	2 cut(s)	259, 751
BspACI	CCGC	4 cut(s)	80, 295, 603, 635
BspANI	GGCC	2 cut(s)	264, 750
BspHI	TCATGA	3 cut(s)	568, 574, 771
BspLI	GGNNCC	3 cut(s)	39, 821, 1036
BspMAI	CTGCAG	1 cut(s)	1006
BspMI	ACCTGC	1 cut(s)	995
BspPI	GGATC	4 cut(s)	308, 597, 1029, 1042
BspQI	GCTCTTC	1 cut(s)	244
BspT107I	GGYRCC	1 cut(s)	819
BsrFI	RCCGGY	1 cut(s)	945
BsrI	ACTGG	2 cut(s)	397, 805
BssAI	RCCGGY	1 cut(s)	945
BssECI	CCNNGG	4 cut(s)	41, 231, 259, 751
BssT1I	CCWWGG	3 cut(s)	41, 259, 751
Bst2UI	CCWGG	2 cut(s)	233, 747
Bst4CI	ACNGT	1 cut(s)	1045
Bst6I	CTCTTC	1 cut(s)	244
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	861
BstC8I	GCNNGC	3 cut(s)	480, 484, 879
BstDSI	CCRYGG	2 cut(s)	259, 751
BstF5I	GGATG	1 cut(s)	350
BstMAI	GTCTC	2 cut(s)	177, 780
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 810, 946, 1072, 1075, 1084
BstNI	CCWGG	2 cut(s)	233, 747
BstSCI	CCNGG	3 cut(s)	231, 745, 835
BstSFI	CTRYAG	2 cut(s)	241, 1002
BstV1I	GCAGC	7 cut(s)	519, 643, 716, 778, 1075, 1078, 1087
BstX2I	RGATCY	1 cut(s)	1034
BstYI	RGATCY	1 cut(s)	1034
BsuRI	GGCC	2 cut(s)	264, 750
BtgI	CCRYGG	2 cut(s)	259, 751
BtgZI	GCGATG	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	350
BtsI	GCAGTG	1 cut(s)	811
BtsIMutI	CAGTG	3 cut(s)	798, 811, 1041
BveI	ACCTGC	1 cut(s)	995
Cac8I	GCNNGC	3 cut(s)	480, 484, 879
CaiI	CAGNNNCTG	1 cut(s)	789
CciI	TCATGA	3 cut(s)	568, 574, 771
Cfr10I	RCCGGY	1 cut(s)	945
Cfr13I	GGNCC	1 cut(s)	943
Csp6I	GTAC	5 cut(s)	94, 121, 292, 677, 820
CspCI	CAANNNNNGTGG	2 cut(s)	71, 106
CviQI	GTAC	5 cut(s)	94, 121, 292, 677, 820
DraI	TTTAAA	1 cut(s)	367
DraIII	CACNNNGTG	1 cut(s)	861
EaeI	YGGCCR	2 cut(s)	262, 748
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
Eco130I	CCWWGG	3 cut(s)	41, 259, 751
Eco47I	GGWCC	1 cut(s)	943
Eco72I	CACGTG	1 cut(s)	861
EcoRII	CCWGG	2 cut(s)	231, 745
EcoT14I	CCWWGG	3 cut(s)	41, 259, 751
EcoT22I	ATGCAT	2 cut(s)	288, 498
ErhI	CCWWGG	3 cut(s)	41, 259, 751
FauI	CCCGC	1 cut(s)	610
FbaI	TGATCA	4 cut(s)	571, 577, 913, 1018
FblI	GTMKAC	2 cut(s)	21, 74
Fnu4HI	GCNGC	8 cut(s)	508, 632, 635, 705, 767, 1064, 1067, 1076
FokI	GGATG	1 cut(s)	357
Fsp4HI	GCNGC	8 cut(s)	508, 632, 635, 705, 767, 1064, 1067, 1076
FspBI	CTAG	2 cut(s)	333, 417
GluI	GCNGC	8 cut(s)	508, 632, 635, 705, 767, 1064, 1067, 1076
GsaI	CCCAGC	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	264, 750
HapII	CCGG	3 cut(s)	817, 836, 946
HincII	GTYRAC	4 cut(s)	22, 75, 850, 1048
HindII	GTYRAC	4 cut(s)	22, 75, 850, 1048
HindIII	AAGCTT	1 cut(s)	825
HinfI	GANTC	3 cut(s)	76, 737, 977
HpaI	GTTAAC	1 cut(s)	850
HpaII	CCGG	3 cut(s)	817, 836, 946
HphI	GGTGA	3 cut(s)	361, 431, 735
Hpy166II	GTNNAC	5 cut(s)	22, 75, 833, 850, 1048
Hpy188I	TCNGA	6 cut(s)	14, 197, 433, 517, 736, 910
Hpy188III	TCNNGA	6 cut(s)	569, 575, 581, 587, 772, 1022
Hpy8I	GTNNAC	5 cut(s)	22, 75, 833, 850, 1048
HpyAV	CCTTC	4 cut(s)	163, 398, 499, 741
HpyCH4III	ACNGT	1 cut(s)	1045
HpyCH4IV	ACGT	2 cut(s)	860, 983
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 810, 946, 1072, 1075, 1084
HpySE526I	ACGT	2 cut(s)	860, 983
KpnI	GGTACC	1 cut(s)	823
Ksp22I	TGATCA	4 cut(s)	571, 577, 913, 1018
KspAI	GTTAAC	1 cut(s)	850
LguI	GCTCTTC	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	995
Lsp1109I	GCAGC	7 cut(s)	519, 643, 716, 778, 1075, 1078, 1087
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	2 cut(s)	333, 417
MaeII	ACGT	2 cut(s)	860, 983
MaeIII	GTNAC	3 cut(s)	388, 741, 952
MboII	GAAGA	7 cut(s)	223, 261, 314, 350, 385, 912, 986
MfeI	CAATTG	1 cut(s)	473
MflI	RGATCY	1 cut(s)	1034
MhlI	GDGCHC	2 cut(s)	256, 800
MlsI	TGGCCA	2 cut(s)	264, 750
MluCI	AATT	5 cut(s)	66, 325, 376, 473, 625
MluNI	TGGCCA	2 cut(s)	264, 750
MlyI	GAGTC	1 cut(s)	70
Mox20I	TGGCCA	2 cut(s)	264, 750
Mph1103I	ATGCAT	2 cut(s)	288, 498
MroXI	GAANNNNTTC	1 cut(s)	380
MscI	TGGCCA	2 cut(s)	264, 750
MseI	TTAA	5 cut(s)	366, 672, 849, 888, 1056
MslI	CAYNNNNRTG	2 cut(s)	491, 573
Msp20I	TGGCCA	2 cut(s)	264, 750
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	3 cut(s)	817, 836, 946
MspR9I	CCNGG	3 cut(s)	233, 747, 837
MunI	CAATTG	1 cut(s)	473
MvaI	CCWGG	2 cut(s)	233, 747
MwoI	GCNNNNNNNGC	6 cut(s)	155, 810, 946, 1072, 1075, 1084
NciI	CCSGG	1 cut(s)	837
NcoI	CCATGG	2 cut(s)	259, 751
NlaIV	GGNNCC	3 cut(s)	39, 821, 1036
NmuCI	GTSAC	1 cut(s)	741
NsiI	ATGCAT	2 cut(s)	288, 498
PagI	TCATGA	3 cut(s)	568, 574, 771
PaqCI	CACCTGC	1 cut(s)	995
PciSI	GCTCTTC	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	2 cut(s)	737, 977
PflFI	GACNNNGTC	1 cut(s)	130
PflMI	CCANNNNNTGG	1 cut(s)	757
PkrI	GCNGC	8 cut(s)	509, 633, 636, 706, 768, 1065, 1068, 1077
PleI	GAGTC	1 cut(s)	70
PmaCI	CACGTG	1 cut(s)	861
PmlI	CACGTG	1 cut(s)	861
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	861
Psp6I	CCWGG	2 cut(s)	231, 745
PspCI	CACGTG	1 cut(s)	861
PspFI	CCCAGC	1 cut(s)	158
PspGI	CCWGG	2 cut(s)	231, 745
PspN4I	GGNNCC	3 cut(s)	39, 821, 1036
PspPI	GGNCC	1 cut(s)	943
PstI	CTGCAG	1 cut(s)	1006
PstNI	CAGNNNCTG	1 cut(s)	789
PsuI	RGATCY	1 cut(s)	1034
PsyI	GACNNNGTC	1 cut(s)	130
PvuII	CAGCTG	1 cut(s)	454
RsaI	GTAC	5 cut(s)	95, 122, 293, 678, 821
RsaNI	GTAC	5 cut(s)	94, 121, 292, 677, 820
RseI	CAYNNNNRTG	2 cut(s)	491, 573
SalI	GTCGAC	2 cut(s)	20, 73
SapI	GCTCTTC	1 cut(s)	244
SaqAI	TTAA	5 cut(s)	366, 672, 849, 888, 1056
SatI	GCNGC	8 cut(s)	508, 632, 635, 705, 767, 1064, 1067, 1076
Sau96I	GGNCC	1 cut(s)	943
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	3 cut(s)	233, 747, 837
SduI	GDGCHC	2 cut(s)	256, 800
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	2 cut(s)	241, 1002
SinI	GGWCC	1 cut(s)	943
SmiMI	CAYNNNNRTG	2 cut(s)	491, 573
SmlI	CTYRAG	2 cut(s)	318, 663
SmoI	CTYRAG	2 cut(s)	318, 663
Sse9I	AATT	5 cut(s)	66, 325, 376, 473, 625
SsiI	CCGC	4 cut(s)	80, 295, 603, 635
SspMI	CTAG	2 cut(s)	333, 417
StyD4I	CCNGG	3 cut(s)	231, 745, 835
StyI	CCWWGG	3 cut(s)	41, 259, 751
TaaI	ACNGT	1 cut(s)	1045
TaiI	ACGT	2 cut(s)	863, 986
TaqI	TCGA	2 cut(s)	21, 74
TasI	AATT	5 cut(s)	66, 325, 376, 473, 625
TauI	GCSGC	1 cut(s)	637
TfiI	GAWTC	2 cut(s)	737, 977
Tru1I	TTAA	5 cut(s)	366, 672, 849, 888, 1056
Tru9I	TTAA	5 cut(s)	366, 672, 849, 888, 1056
TscAI	CASTG	3 cut(s)	805, 811, 1048
TseFI	GTSAC	1 cut(s)	741
TseI	GCWGC	7 cut(s)	507, 631, 704, 766, 1063, 1066, 1075
Tsp45I	GTSAC	1 cut(s)	741
TspDTI	ATGAA	5 cut(s)	417, 437, 476, 481, 987
TspRI	CASTG	3 cut(s)	805, 811, 1048
Tth111I	GACNNNGTC	1 cut(s)	130
Van91I	CCANNNNNTGG	1 cut(s)	757
VpaK11BI	GGWCC	1 cut(s)	943
XapI	RAATTY	2 cut(s)	325, 376
XmiI	GTMKAC	2 cut(s)	21, 74
XmnI	GAANNNNTTC	1 cut(s)	380
XspI	CTAG	2 cut(s)	333, 417
Zsp2I	ATGCAT	2 cut(s)	288, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.