Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0014489

Physical Location & Seq

Genomic Coordinates Forward (+)

424798 .. 425576

Gene Structure 779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG002100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAACTCATCAGATCATCACCATCATCAACAGCTGACTATGAACACCACCCAATTGCAAGCTCGCACCTTCATGCATACGCATAGCAGCAGATCAGATACCAACCAATACTTACTACGCCAACAAGCCTTTGAACTAAACAGACCTCATGATCATGATCAAGATCAGGATCAGTTGCCACCCGCCCTCCACTATGCCCACCTCAATTTGCAGCCGCCTCCTCAATACTCTCTTTTCCACTCTCAAGCCCTTAATGTACCAACTAACTCCCACAAAACCCTTGCAGCCTATAATGACTATTCTACCCTCCCTTCCGATTCGTCACCTGGCCATGGCATGGTCAAGCAGCTCATGACCAACCCCAGAGACTGCGAGAGCACTGGCAGTGAGAGCCTCCGGTACCAAGCTTGTGAACCGGGCTTGGAAGTTAACGACACCACGTGCGAAACAAATCAGCAAGCGATAGTTAATGCAGGAGGAAGATCATCAGATGATCAAGGCATGAGCGAATGGGCTATGCTGGACCGGCTTGTAACTTCTCATCTTGGAAATGAAGATTCAACGTCCAAAGGTGGAGCTTCTGCAGGTGCGAGGTATGATCAGGACGGGAATGGATCCTCCACTGTCAACCAGATTAACCAGCAGCAGCAACAGCAGCTCTCTTTGCGTGGAGAGATGGATTTTTGGGGCTATGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042546 GO:0043565 GO:0044085 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

233

Amino Acids

26.0

Weight (kDa)

5.48

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10350 AT4G10350
fragaria_vesca	FvH4_2g00240
malus_domestica	MD05G1005600.v1.1 MD10G1000900.v1.1
prunus_persica	Prupe.8G002500_v2.0.a1
pyrus_communis	pycom05g00070
rosa_chinensis	RchiOBHm_Chr6g0249541
rosa_laevigata	RLG00000015571
rosa_multiflora	Rmu_ssc0000407.1_g000012
rosa_roxburghii	Rroxscaffold_7G00217580
rosa_rugosa	Rorug05G0493400
rosa_samantha	Rh6AG003100 Rh6BG007000 Rh6CG002100 Rh6DG002100
rosa_wichuraiana	Rw6G000360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	575
Acc36I	ACCTGC	1 cut(s)	575
Acc65I	GGTACC	1 cut(s)	399
AccB1I	GGYRCC	1 cut(s)	399
AccB7I	CCANNNNNTGG	1 cut(s)	337
AciI	CCGC	2 cut(s)	183, 215
AclWI	GGATC	3 cut(s)	177, 609, 622
AcoI	YGGCCR	1 cut(s)	328
AcvI	CACGTG	1 cut(s)	441
AdeI	CACNNNGTG	1 cut(s)	441
AfaI	GTAC	2 cut(s)	258, 401
AfiI	CCNNNNNNNGG	2 cut(s)	332, 337
AgsI	TTSAA	2 cut(s)	134, 561
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	6 cut(s)	34, 62, 349, 407, 578, 658
AluI	AGCT	6 cut(s)	34, 62, 349, 407, 578, 658
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	3 cut(s)	177, 609, 622
AlwNI	CAGNNNCTG	1 cut(s)	369
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	7 cut(s)	87, 211, 284, 346, 643, 646, 655
Asp718I	GGTACC	1 cut(s)	399
AspS9I	GGNCC	1 cut(s)	523
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	2 cut(s)	11, 315
AvaII	GGWCC	1 cut(s)	523
BalI	TGGCCA	1 cut(s)	330
BamHI	GGATCC	1 cut(s)	614
BanI	GGYRCC	1 cut(s)	399
BbrPI	CACGTG	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	7 cut(s)	99, 223, 296, 358, 655, 658, 667
BccI	CCATC	2 cut(s)	30, 670
BciT130I	CCWGG	1 cut(s)	327
BclI	TGATCA	4 cut(s)	151, 157, 493, 598
BcnI	CCSGG	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	582
BfuAI	ACCTGC	1 cut(s)	575
BisI	GCNGC	8 cut(s)	88, 212, 215, 285, 347, 644, 647, 656
BlsI	GCNGC	8 cut(s)	89, 213, 216, 286, 348, 645, 648, 657
Bme1390I	CCNGG	2 cut(s)	327, 417
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	1 cut(s)	523
BmiI	GGNNCC	2 cut(s)	401, 616
BmrFI	CCNGG	2 cut(s)	327, 417
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	417
BsaAI	YACGTR	1 cut(s)	441
BsaBI	GATNNNNATC	3 cut(s)	156, 162, 168
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	396
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 337
Bse118I	RCCGGY	1 cut(s)	525
Bse1I	ACTGG	1 cut(s)	385
Bse8I	GATNNNNATC	3 cut(s)	156, 162, 168
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	331
BseJI	GATNNNNATC	3 cut(s)	156, 162, 168
BseLI	CCNNNNNNNGG	2 cut(s)	332, 337
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	210
BseXI	GCAGC	7 cut(s)	99, 223, 296, 358, 655, 658, 667
BshFI	GGCC	1 cut(s)	330
BshNI	GGYRCC	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	3 cut(s)	397, 416, 526
BslI	CCNNNNNNNGG	2 cut(s)	332, 337
BsmAI	GTCTC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp19I	CCATGG	1 cut(s)	331
BspACI	CCGC	2 cut(s)	183, 215
BspANI	GGCC	1 cut(s)	330
BspHI	TCATGA	3 cut(s)	148, 154, 351
BspLI	GGNNCC	2 cut(s)	401, 616
BspMAI	CTGCAG	1 cut(s)	586
BspMI	ACCTGC	1 cut(s)	575
BspPI	GGATC	3 cut(s)	177, 609, 622
BspT107I	GGYRCC	1 cut(s)	399
BsrFI	RCCGGY	1 cut(s)	525
BsrI	ACTGG	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	525
BssECI	CCNNGG	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	625
BstBAI	YACGTR	1 cut(s)	441
BstC8I	GCNNGC	3 cut(s)	60, 64, 459
BstDSI	CCRYGG	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	5 cut(s)	390, 526, 652, 655, 664
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	2 cut(s)	325, 415
BstSFI	CTRYAG	1 cut(s)	582
BstV1I	GCAGC	7 cut(s)	99, 223, 296, 358, 655, 658, 667
BstX2I	RGATCY	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	614
BsuRI	GGCC	1 cut(s)	330
BtgI	CCRYGG	1 cut(s)	331
BtsI	GCAGTG	1 cut(s)	391
BtsIMutI	CAGTG	3 cut(s)	378, 391, 621
BveI	ACCTGC	1 cut(s)	575
Cac8I	GCNNGC	3 cut(s)	60, 64, 459
CaiI	CAGNNNCTG	1 cut(s)	369
CciI	TCATGA	3 cut(s)	148, 154, 351
Cfr10I	RCCGGY	1 cut(s)	525
Cfr13I	GGNCC	1 cut(s)	523
Csp6I	GTAC	2 cut(s)	257, 400
CviAII	CATG	7 cut(s)	73, 149, 155, 332, 337, 352, 502
CviQI	GTAC	2 cut(s)	257, 400
DraIII	CACNNNGTG	1 cut(s)	441
EaeI	YGGCCR	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	331
Eco47I	GGWCC	1 cut(s)	523
Eco72I	CACGTG	1 cut(s)	441
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	331
EcoT22I	ATGCAT	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	331
FaeI	CATG	7 cut(s)	76, 152, 158, 335, 340, 355, 505
FatI	CATG	7 cut(s)	72, 148, 154, 331, 336, 351, 501
FauI	CCCGC	1 cut(s)	190
FbaI	TGATCA	4 cut(s)	151, 157, 493, 598
Fnu4HI	GCNGC	8 cut(s)	88, 212, 215, 285, 347, 644, 647, 656
Fsp4HI	GCNGC	8 cut(s)	88, 212, 215, 285, 347, 644, 647, 656
GluI	GCNGC	8 cut(s)	88, 212, 215, 285, 347, 644, 647, 656
HaeIII	GGCC	1 cut(s)	330
HapII	CCGG	3 cut(s)	397, 416, 526
Hin1II	CATG	7 cut(s)	76, 152, 158, 335, 340, 355, 505
HincII	GTYRAC	2 cut(s)	430, 628
HindII	GTYRAC	2 cut(s)	430, 628
HindIII	AAGCTT	1 cut(s)	405
HinfI	GANTC	2 cut(s)	317, 557
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	3 cut(s)	397, 416, 526
HphI	GGTGA	2 cut(s)	11, 315
Hpy166II	GTNNAC	3 cut(s)	413, 430, 628
Hpy188I	TCNGA	4 cut(s)	13, 97, 316, 490
Hpy188III	TCNNGA	6 cut(s)	149, 155, 161, 167, 352, 602
Hpy8I	GTNNAC	3 cut(s)	413, 430, 628
HpyAV	CCTTC	2 cut(s)	79, 321
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	2 cut(s)	440, 563
HpyCH4V	TGCA	7 cut(s)	58, 76, 211, 284, 473, 584, 695
HpyF10VI	GCNNNNNNNGC	5 cut(s)	390, 526, 652, 655, 664
HpySE526I	ACGT	2 cut(s)	440, 563
Hsp92II	CATG	7 cut(s)	76, 152, 158, 335, 340, 355, 505
KpnI	GGTACC	1 cut(s)	403
Ksp22I	TGATCA	4 cut(s)	151, 157, 493, 598
KspAI	GTTAAC	1 cut(s)	430
LmnI	GCTCC	1 cut(s)	575
Lsp1109I	GCAGC	7 cut(s)	99, 223, 296, 358, 655, 658, 667
MaeII	ACGT	2 cut(s)	440, 563
MaeIII	GTNAC	2 cut(s)	321, 532
MboII	GAAGA	2 cut(s)	492, 566
MfeI	CAATTG	1 cut(s)	53
MflI	RGATCY	1 cut(s)	614
MhlI	GDGCHC	1 cut(s)	380
MlsI	TGGCCA	1 cut(s)	330
MluCI	AATT	2 cut(s)	53, 205
MluNI	TGGCCA	1 cut(s)	330
Mox20I	TGGCCA	1 cut(s)	330
Mph1103I	ATGCAT	1 cut(s)	78
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	4 cut(s)	252, 429, 468, 636
MslI	CAYNNNNRTG	2 cut(s)	71, 153
Msp20I	TGGCCA	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	3 cut(s)	397, 416, 526
MspR9I	CCNGG	2 cut(s)	327, 417
MunI	CAATTG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	5 cut(s)	390, 526, 652, 655, 664
NciI	CCSGG	1 cut(s)	417
NcoI	CCATGG	1 cut(s)	331
NlaIII	CATG	7 cut(s)	76, 152, 158, 335, 340, 355, 505
NlaIV	GGNNCC	2 cut(s)	401, 616
NmuCI	GTSAC	1 cut(s)	321
NsiI	ATGCAT	1 cut(s)	78
PagI	TCATGA	3 cut(s)	148, 154, 351
PaqCI	CACCTGC	1 cut(s)	575
PfeI	GAWTC	2 cut(s)	317, 557
PflMI	CCANNNNNTGG	1 cut(s)	337
PkrI	GCNGC	8 cut(s)	89, 213, 216, 286, 348, 645, 648, 657
PmaCI	CACGTG	1 cut(s)	441
PmlI	CACGTG	1 cut(s)	441
Ppu21I	YACGTR	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	325
PspCI	CACGTG	1 cut(s)	441
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	2 cut(s)	401, 616
PspPI	GGNCC	1 cut(s)	523
PstI	CTGCAG	1 cut(s)	586
PstNI	CAGNNNCTG	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	614
PvuII	CAGCTG	1 cut(s)	34
RsaI	GTAC	2 cut(s)	258, 401
RsaNI	GTAC	2 cut(s)	257, 400
RseI	CAYNNNNRTG	2 cut(s)	71, 153
SaqAI	TTAA	4 cut(s)	252, 429, 468, 636
SatI	GCNGC	8 cut(s)	88, 212, 215, 285, 347, 644, 647, 656
Sau96I	GGNCC	1 cut(s)	523
ScrFI	CCNGG	2 cut(s)	327, 417
SduI	GDGCHC	1 cut(s)	380
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	2 cut(s)	71, 153
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	2 cut(s)	53, 205
SsiI	CCGC	2 cut(s)	183, 215
StyD4I	CCNGG	2 cut(s)	325, 415
StyI	CCWWGG	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	2 cut(s)	443, 566
TasI	AATT	2 cut(s)	53, 205
TauI	GCSGC	1 cut(s)	217
TfiI	GAWTC	2 cut(s)	317, 557
Tru1I	TTAA	4 cut(s)	252, 429, 468, 636
Tru9I	TTAA	4 cut(s)	252, 429, 468, 636
TscAI	CASTG	3 cut(s)	385, 391, 628
TseFI	GTSAC	1 cut(s)	321
TseI	GCWGC	7 cut(s)	87, 211, 284, 346, 643, 646, 655
Tsp45I	GTSAC	1 cut(s)	321
TspDTI	ATGAA	4 cut(s)	17, 56, 61, 567
TspRI	CASTG	3 cut(s)	385, 391, 628
Van91I	CCANNNNNTGG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	523
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.