Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0014489

Physical Location & Seq

Genomic Coordinates Forward (+)

580750 .. 582244

Gene Structure 1495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG003100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAGGAAAACCCTGGTTTTCTACAGAGGAAGAGCACCCCATGGCCAAAAGACTGATTGGATTATGCATGAGTACCGCCTTGAAGATGGCGATGATCCTCAAGGAAATTTATCTAGCGAAGATGGATGGGTGATATGTAGGGTGTTTAAAAAGAAGAATTTATTCAAGGTAACTGGGAATAATGAACGAGGAAGCTCATCAGATCATCACCATCATCAACAGCTGACTATGAACACCAACCAATTGCAAGCTCGCACCTTCATGCATACGCATAGCAGCAGATCAGATACCAACCAATACTTACTACGCCAACAAGCCTTTGAACTAAACAGACCTCATGATCATGATCAAGATCAGGATCAGTTGCCACCCGCCCTCCACTATGCCCACCTCAATTTGCAGCCGCCTCCTCAATACTCTCTTTTCCAGTCTCAAGCCCTTAATGTACCAACTAACTCCCACAAAACCCTTGCTGCCTATAATGACTATTCTACCCTCCCTTCCGATTCGTCACCTGGCCATGGCATGGTCAAGCAGCTCATGACCAACCCCAGAGACTGCGAGAGCACTGGCAGCGAGAGCCTCCGGTACCAAGCTTGTGAACCGGGCTTGGAAGTTAACGACACCACGTGCGAAACAAATCAGCAAGCGATAGTTAATGCAGGAGGAAGATCATCAGATGATCAAGGCATGAGCGAATGGGCTATGCTGGACCGGCTTGTAACTTCTCATCTTGGAAATGAAGATTCAACGTCCAAAGGTGGAGCTTCTGCAGGTGCGAGGTATGATCAGGACGGGAATGGATCCTCCACTGTCAACCAGATTAACCAGCAGCAGCAACAGCAGCTCTCTTTGCGTGGAGAGATGGATTTTTGGGGCTATGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042546 GO:0043565 GO:0044085 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

296

Amino Acids

33.35

Weight (kDa)

5.89

Isoelectric Point (pI)

46.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	1 - 27	3e-06	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10350 AT4G10350
fragaria_vesca	FvH4_2g00240
malus_domestica	MD05G1005600.v1.1 MD10G1000900.v1.1
prunus_persica	Prupe.8G002500_v2.0.a1
pyrus_communis	pycom05g00070
rosa_chinensis	RchiOBHm_Chr6g0249541
rosa_laevigata	RLG00000015571
rosa_multiflora	Rmu_ssc0000407.1_g000012
rosa_roxburghii	Rroxscaffold_7G00217580
rosa_rugosa	Rorug05G0493400
rosa_samantha	Rh6AG003100 Rh6BG007000 Rh6CG002100 Rh6DG002100
rosa_wichuraiana	Rw6G000360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	764
Acc36I	ACCTGC	1 cut(s)	764
Acc65I	GGTACC	1 cut(s)	588
AccB1I	GGYRCC	1 cut(s)	588
AccB7I	CCANNNNNTGG	1 cut(s)	526
AciI	CCGC	3 cut(s)	76, 372, 404
AclWI	GGATC	4 cut(s)	89, 366, 798, 811
AcoI	YGGCCR	2 cut(s)	43, 517
AcsI	RAATTY	2 cut(s)	106, 157
AcvI	CACGTG	1 cut(s)	630
AdeI	CACNNNGTG	1 cut(s)	630
AfaI	GTAC	3 cut(s)	74, 447, 590
AfiI	CCNNNNNNNGG	2 cut(s)	521, 526
AgsI	TTSAA	4 cut(s)	83, 166, 323, 750
AjnI	CCWGG	2 cut(s)	12, 514
AluBI	AGCT	7 cut(s)	195, 223, 251, 538, 596, 767, 847
AluI	AGCT	7 cut(s)	195, 223, 251, 538, 596, 767, 847
Alw21I	GWGCWC	2 cut(s)	37, 569
Alw26I	GTCTC	2 cut(s)	435, 549
AlwI	GGATC	4 cut(s)	89, 366, 798, 811
AlwNI	CAGNNNCTG	1 cut(s)	558
AoxI	GGCC	2 cut(s)	43, 517
ApeKI	GCWGC	8 cut(s)	276, 400, 473, 535, 573, 832, 835, 844
ApoI	RAATTY	2 cut(s)	106, 157
Asp700I	GAANNNNTTC	1 cut(s)	161
Asp718I	GGTACC	1 cut(s)	588
AspS9I	GGNCC	1 cut(s)	712
AsuC2I	CCSGG	1 cut(s)	606
AsuHPI	GGTGA	3 cut(s)	142, 200, 504
AvaII	GGWCC	1 cut(s)	712
BalI	TGGCCA	2 cut(s)	45, 519
BamHI	GGATCC	1 cut(s)	803
BanI	GGYRCC	1 cut(s)	588
BbrPI	CACGTG	1 cut(s)	630
Bbv12I	GWGCWC	2 cut(s)	37, 569
BbvI	GCAGC	8 cut(s)	288, 412, 460, 547, 585, 844, 847, 856
BccI	CCATC	5 cut(s)	80, 116, 120, 219, 859
BciT130I	CCWGG	2 cut(s)	14, 516
BclI	TGATCA	4 cut(s)	340, 346, 682, 787
BcnI	CCSGG	1 cut(s)	606
BcoDI	GTCTC	2 cut(s)	435, 549
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	2 cut(s)	22, 771
BfuAI	ACCTGC	1 cut(s)	764
BisI	GCNGC	9 cut(s)	277, 401, 404, 474, 536, 574, 833, 836, 845
BlsI	GCNGC	9 cut(s)	278, 402, 405, 475, 537, 575, 834, 837, 846
Bme1390I	CCNGG	3 cut(s)	14, 516, 606
Bme18I	GGWCC	1 cut(s)	712
BmgT120I	GGNCC	1 cut(s)	712
BmiI	GGNNCC	2 cut(s)	590, 805
BmrFI	CCNGG	3 cut(s)	14, 516, 606
BmrI	ACTGGG	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	183
BpuEI	CTTGAG	2 cut(s)	84, 417
BpuMI	CCSGG	1 cut(s)	606
BsaAI	YACGTR	1 cut(s)	630
BsaBI	GATNNNNATC	3 cut(s)	345, 351, 357
BsaJI	CCNNGG	3 cut(s)	12, 40, 520
BsaWI	WCCGGW	1 cut(s)	585
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	521, 526
Bse118I	RCCGGY	1 cut(s)	714
Bse1I	ACTGG	3 cut(s)	178, 427, 574
Bse8I	GATNNNNATC	3 cut(s)	345, 351, 357
BseBI	CCWGG	2 cut(s)	14, 516
BseDI	CCNNGG	3 cut(s)	12, 40, 520
BseGI	GGATG	1 cut(s)	131
BseJI	GATNNNNATC	3 cut(s)	345, 351, 357
BseLI	CCNNNNNNNGG	2 cut(s)	521, 526
BseNI	ACTGG	3 cut(s)	178, 427, 574
BseRI	GAGGAG	1 cut(s)	399
BseXI	GCAGC	8 cut(s)	288, 412, 460, 547, 585, 844, 847, 856
BshFI	GGCC	2 cut(s)	45, 519
BshNI	GGYRCC	1 cut(s)	588
BsiHKAI	GWGCWC	2 cut(s)	37, 569
BsiSI	CCGG	3 cut(s)	586, 605, 715
BslI	CCNNNNNNNGG	2 cut(s)	521, 526
BsmAI	GTCTC	2 cut(s)	435, 549
BsnI	GGCC	2 cut(s)	45, 519
Bsp1286I	GDGCHC	2 cut(s)	37, 569
Bsp19I	CCATGG	2 cut(s)	40, 520
BspACI	CCGC	3 cut(s)	76, 372, 404
BspANI	GGCC	2 cut(s)	45, 519
BspHI	TCATGA	3 cut(s)	337, 343, 540
BspLI	GGNNCC	2 cut(s)	590, 805
BspMAI	CTGCAG	1 cut(s)	775
BspMI	ACCTGC	1 cut(s)	764
BspPI	GGATC	4 cut(s)	89, 366, 798, 811
BspQI	GCTCTTC	1 cut(s)	25
BspT107I	GGYRCC	1 cut(s)	588
BsrFI	RCCGGY	1 cut(s)	714
BsrI	ACTGG	3 cut(s)	178, 427, 574
BssAI	RCCGGY	1 cut(s)	714
BssECI	CCNNGG	3 cut(s)	12, 40, 520
BssT1I	CCWWGG	2 cut(s)	40, 520
Bst2UI	CCWGG	2 cut(s)	14, 516
Bst4CI	ACNGT	1 cut(s)	814
Bst6I	CTCTTC	1 cut(s)	25
BstBAI	YACGTR	1 cut(s)	630
BstC8I	GCNNGC	3 cut(s)	249, 253, 648
BstDSI	CCRYGG	2 cut(s)	40, 520
BstF5I	GGATG	1 cut(s)	131
BstMAI	GTCTC	2 cut(s)	435, 549
BstMWI	GCNNNNNNNGC	6 cut(s)	573, 579, 715, 841, 844, 853
BstNI	CCWGG	2 cut(s)	14, 516
BstSCI	CCNGG	3 cut(s)	12, 514, 604
BstSFI	CTRYAG	2 cut(s)	22, 771
BstV1I	GCAGC	8 cut(s)	288, 412, 460, 547, 585, 844, 847, 856
BstX2I	RGATCY	1 cut(s)	803
BstYI	RGATCY	1 cut(s)	803
BsuRI	GGCC	2 cut(s)	45, 519
BtgI	CCRYGG	2 cut(s)	40, 520
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	567, 810
BveI	ACCTGC	1 cut(s)	764
Cac8I	GCNNGC	3 cut(s)	249, 253, 648
CaiI	CAGNNNCTG	1 cut(s)	558
CciI	TCATGA	3 cut(s)	337, 343, 540
Cfr10I	RCCGGY	1 cut(s)	714
Cfr13I	GGNCC	1 cut(s)	712
Csp6I	GTAC	3 cut(s)	73, 446, 589
CviAII	CATG	9 cut(s)	41, 68, 262, 338, 344, 521, 526, 541, 691
CviQI	GTAC	3 cut(s)	73, 446, 589
DraI	TTTAAA	1 cut(s)	148
DraIII	CACNNNGTG	1 cut(s)	630
EaeI	YGGCCR	2 cut(s)	43, 517
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Eco130I	CCWWGG	2 cut(s)	40, 520
Eco47I	GGWCC	1 cut(s)	712
Eco72I	CACGTG	1 cut(s)	630
EcoRII	CCWGG	2 cut(s)	12, 514
EcoT14I	CCWWGG	2 cut(s)	40, 520
EcoT22I	ATGCAT	2 cut(s)	69, 267
ErhI	CCWWGG	2 cut(s)	40, 520
FaeI	CATG	9 cut(s)	44, 71, 265, 341, 347, 524, 529, 544, 694
FatI	CATG	9 cut(s)	40, 67, 261, 337, 343, 520, 525, 540, 690
FauI	CCCGC	1 cut(s)	379
FbaI	TGATCA	4 cut(s)	340, 346, 682, 787
Fnu4HI	GCNGC	9 cut(s)	277, 401, 404, 474, 536, 574, 833, 836, 845
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	9 cut(s)	277, 401, 404, 474, 536, 574, 833, 836, 845
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	9 cut(s)	277, 401, 404, 474, 536, 574, 833, 836, 845
HaeIII	GGCC	2 cut(s)	45, 519
HapII	CCGG	3 cut(s)	586, 605, 715
Hin1II	CATG	9 cut(s)	44, 71, 265, 341, 347, 524, 529, 544, 694
HincII	GTYRAC	2 cut(s)	619, 817
HindII	GTYRAC	2 cut(s)	619, 817
HindIII	AAGCTT	1 cut(s)	594
HinfI	GANTC	2 cut(s)	506, 746
HpaI	GTTAAC	1 cut(s)	619
HpaII	CCGG	3 cut(s)	586, 605, 715
HphI	GGTGA	3 cut(s)	142, 200, 504
Hpy166II	GTNNAC	3 cut(s)	602, 619, 817
Hpy188I	TCNGA	4 cut(s)	202, 286, 505, 679
Hpy188III	TCNNGA	6 cut(s)	338, 344, 350, 356, 541, 791
Hpy8I	GTNNAC	3 cut(s)	602, 619, 817
HpyAV	CCTTC	2 cut(s)	268, 510
HpyCH4III	ACNGT	1 cut(s)	814
HpyCH4IV	ACGT	2 cut(s)	629, 752
HpyCH4V	TGCA	7 cut(s)	67, 247, 265, 400, 662, 773, 884
HpyF10VI	GCNNNNNNNGC	6 cut(s)	573, 579, 715, 841, 844, 853
HpySE526I	ACGT	2 cut(s)	629, 752
Hsp92II	CATG	9 cut(s)	44, 71, 265, 341, 347, 524, 529, 544, 694
KpnI	GGTACC	1 cut(s)	592
Ksp22I	TGATCA	4 cut(s)	340, 346, 682, 787
KspAI	GTTAAC	1 cut(s)	619
LguI	GCTCTTC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	764
Lsp1109I	GCAGC	8 cut(s)	288, 412, 460, 547, 585, 844, 847, 856
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	2 cut(s)	629, 752
MaeIII	GTNAC	3 cut(s)	169, 510, 721
MboII	GAAGA	6 cut(s)	42, 95, 131, 166, 681, 755
MfeI	CAATTG	1 cut(s)	242
MflI	RGATCY	1 cut(s)	803
MhlI	GDGCHC	2 cut(s)	37, 569
MlsI	TGGCCA	2 cut(s)	45, 519
MluCI	AATT	4 cut(s)	106, 157, 242, 394
MluNI	TGGCCA	2 cut(s)	45, 519
Mox20I	TGGCCA	2 cut(s)	45, 519
Mph1103I	ATGCAT	2 cut(s)	69, 267
MroXI	GAANNNNTTC	1 cut(s)	161
MscI	TGGCCA	2 cut(s)	45, 519
MseI	TTAA	5 cut(s)	147, 441, 618, 657, 825
MslI	CAYNNNNRTG	2 cut(s)	260, 342
Msp20I	TGGCCA	2 cut(s)	45, 519
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	3 cut(s)	586, 605, 715
MspR9I	CCNGG	3 cut(s)	14, 516, 606
MunI	CAATTG	1 cut(s)	242
MvaI	CCWGG	2 cut(s)	14, 516
MwoI	GCNNNNNNNGC	6 cut(s)	573, 579, 715, 841, 844, 853
NciI	CCSGG	1 cut(s)	606
NcoI	CCATGG	2 cut(s)	40, 520
NlaIII	CATG	9 cut(s)	44, 71, 265, 341, 347, 524, 529, 544, 694
NlaIV	GGNNCC	2 cut(s)	590, 805
NmuCI	GTSAC	1 cut(s)	510
NsiI	ATGCAT	2 cut(s)	69, 267
PagI	TCATGA	3 cut(s)	337, 343, 540
PaqCI	CACCTGC	1 cut(s)	764
PciSI	GCTCTTC	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	506, 746
PflMI	CCANNNNNTGG	1 cut(s)	526
PkrI	GCNGC	9 cut(s)	278, 402, 405, 475, 537, 575, 834, 837, 846
PmaCI	CACGTG	1 cut(s)	630
PmlI	CACGTG	1 cut(s)	630
Ppu21I	YACGTR	1 cut(s)	630
Psp6I	CCWGG	2 cut(s)	12, 514
PspCI	CACGTG	1 cut(s)	630
PspGI	CCWGG	2 cut(s)	12, 514
PspN4I	GGNNCC	2 cut(s)	590, 805
PspPI	GGNCC	1 cut(s)	712
PstI	CTGCAG	1 cut(s)	775
PstNI	CAGNNNCTG	1 cut(s)	558
PsuI	RGATCY	1 cut(s)	803
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	3 cut(s)	74, 447, 590
RsaNI	GTAC	3 cut(s)	73, 446, 589
RseI	CAYNNNNRTG	2 cut(s)	260, 342
SapI	GCTCTTC	1 cut(s)	25
SaqAI	TTAA	5 cut(s)	147, 441, 618, 657, 825
SatI	GCNGC	9 cut(s)	277, 401, 404, 474, 536, 574, 833, 836, 845
Sau96I	GGNCC	1 cut(s)	712
ScrFI	CCNGG	3 cut(s)	14, 516, 606
SduI	GDGCHC	2 cut(s)	37, 569
SfcI	CTRYAG	2 cut(s)	22, 771
SinI	GGWCC	1 cut(s)	712
SmiMI	CAYNNNNRTG	2 cut(s)	260, 342
SmlI	CTYRAG	2 cut(s)	99, 432
SmoI	CTYRAG	2 cut(s)	99, 432
Sse9I	AATT	4 cut(s)	106, 157, 242, 394
SsiI	CCGC	3 cut(s)	76, 372, 404
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	3 cut(s)	12, 514, 604
StyI	CCWWGG	2 cut(s)	40, 520
TaaI	ACNGT	1 cut(s)	814
TaiI	ACGT	2 cut(s)	632, 755
TasI	AATT	4 cut(s)	106, 157, 242, 394
TauI	GCSGC	1 cut(s)	406
TfiI	GAWTC	2 cut(s)	506, 746
Tru1I	TTAA	5 cut(s)	147, 441, 618, 657, 825
Tru9I	TTAA	5 cut(s)	147, 441, 618, 657, 825
TscAI	CASTG	2 cut(s)	574, 817
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	8 cut(s)	276, 400, 473, 535, 573, 832, 835, 844
Tsp45I	GTSAC	1 cut(s)	510
TspDTI	ATGAA	4 cut(s)	198, 245, 250, 756
TspRI	CASTG	2 cut(s)	574, 817
Van91I	CCANNNNNTGG	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	712
XapI	RAATTY	2 cut(s)	106, 157
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	1 cut(s)	114
Zsp2I	ATGCAT	2 cut(s)	69, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.