MD10G1000900.v1.1

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0014489
Physical Location & Seq
Reverse (-)
199527 .. 202634
3108 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1000900.v1.1.491

Sequence Viewer

Length: 1188 bp
ATGGCAAATTCTTCGACTGGTGGTGTGCCTCCGGGGTTCCGATTCCACCCTACGGACGAAGAGCTACTTCACTACTATTTGAAGAAGAAAGTGTCCTTTCAGAAGTTTGACATGGAGGTCATTAGAGAGGTGGACTTGAATAAGATGGAACCTTGGGAGTTGCAAGAGAGATGTAGGATTGGGTCGACTCCACAAAACGAGTGGTACTTTTTCAGCCACAAAGACAGAAAGTACCCAACAGGGTCGAGGACAAATAGGGCCACAAACGCTGGGTTTTGGAAGGCAACAGGGCGGGACAAATGCATCAGAAACACCTTCAAGAAGATTGGCATGAGAAAAACCCTTGTTTTCTACAGAGGCAGAGCTCCCCACGGCCAAAAGACTGACTGGATTATGCATGAGTACCGCCTTGAAGATGGCGATGATCCTCAAGGAAACCTATCTAGTGAAGATGGGTGGGTGATCTGTAGAGTTTTCAAGAAGAAGAATTTATTCAAGGTTGCAAATGAAGGAGGAAGCTCTAGCATGAACTCTTCAGAGCATCAGCAGCTCAACAATGCATCAAGCAACAGCCAATTGCAAGCTCGCTCCTTCATGCATAGCCACAGAGACAACCAGTACTTACTACGCCAACAACACCATGCAGCAACCCAAGGGTTCCAACTAAACAATAACTCAAGCCTTCACTACGCCCACCTGCAGTCCCCGCCTCACTACTCTGTTTTCCAATCCCAAGCCCTTATCCCGACCCTCGCCCACAAGCCCCTTTCCTCCTATGACGACTACTCTTCCCAGCTCCCCTCCGACGACTCACCTGCCCACGGCATGGTCAAGCAGCTCATGACAAACCCTAGAGACTGTAAAAGTGGTAGTGAGGGTCTCCGCTACCAAGCGTGTGAACCAGGGTTAGAGGTTGGCACGTGCGAACCAGATCATCAACCAAATATGGTTGGAGGAGGAGCTGGAACAGCTGGCGGAAGAGATAATAATCATGATCACCAGGGGATGAGTGAATGGGCTATGCTCGATCGCCTGGTTACTTCTCATGATCTTGGAAATGATCAAGACTCGTCGTCCAAAGGAACAGCCAGGTATGGGGATGCAAATGCACCCTCTTCCGTCAACCAAATTAACCACCAGCACCTCTCGTTGCGTGGAGAGATGGATTTTTGGGGCTACGCAAAATAA

Protein Analysis

396

Amino Acids

44.68

Weight (kDa)

7.75

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 10 - 137 2.5e-46 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014489)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G10350 AT4G10350
fragaria_vesca FvH4_2g00240
malus_domestica MD05G1005600.v1.1 MD10G1000900.v1.1
prunus_persica Prupe.8G002500_v2.0.a1
pyrus_communis pycom05g00070
rosa_chinensis RchiOBHm_Chr6g0249541
rosa_laevigata RLG00000015571
rosa_multiflora Rmu_ssc0000407.1_g000012
rosa_roxburghii Rroxscaffold_7G00217580
rosa_rugosa Rorug05G0493400
rosa_samantha Rh6AG003100 Rh6BG007000 Rh6CG002100 Rh6DG002100
rosa_wichuraiana Rw6G000360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 705, 823
AasI GACNNNNNNGTC 1 cut(s) 116
Acc36I ACCTGC 2 cut(s) 705, 823
AccB7I CCANNNNNTGG 1 cut(s) 826
AccI GTMKAC 1 cut(s) 185
AciI CCGC 5 cut(s) 292, 406, 707, 883, 975
AclWI GGATC 1 cut(s) 419
AcoI YGGCCR 1 cut(s) 373
AcsI RAATTY 2 cut(s) 7, 487
AcuI CTGAAG 1 cut(s) 519
AcvI CACGTG 1 cut(s) 921
AfaI GTAC 4 cut(s) 206, 233, 404, 620
AfiI CCNNNNNNNGG 4 cut(s) 52, 821, 826, 1095
AgsI TTSAA 6 cut(s) 82, 139, 319, 413, 478, 496
AhdI GACNNNNNGTC 1 cut(s) 1072
AjnI CCWGG 4 cut(s) 901, 999, 1032, 1088
AluBI AGCT 9 cut(s) 64, 365, 519, 550, 584, 796, 838, 962, 971
AluI AGCT 9 cut(s) 64, 365, 519, 550, 584, 796, 838, 962, 971
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 3 cut(s) 603, 849, 884
AlwI GGATC 1 cut(s) 419
AoxI GGCC 2 cut(s) 258, 373
ApeKI GCWGC 3 cut(s) 547, 644, 835
ApoI RAATTY 2 cut(s) 7, 487
Asp700I GAANNNNTTC 1 cut(s) 491
AspS9I GGNCC 1 cut(s) 258
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 3 cut(s) 472, 804, 989
BanII GRGCYC 1 cut(s) 367
BbrPI CACGTG 1 cut(s) 921
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 3 cut(s) 559, 656, 847
BccI CCATC 4 cut(s) 139, 410, 446, 1156
BceAI ACGGC 2 cut(s) 388, 838
BcgI CGANNNNNNTGC 3 cut(s) 28, 797, 831
BciT130I CCWGG 4 cut(s) 903, 1001, 1034, 1090
BclI TGATCA 2 cut(s) 994, 1060
BcnI CCSGG 1 cut(s) 33
BcoDI GTCTC 3 cut(s) 603, 849, 884
BfaI CTAG 3 cut(s) 444, 522, 852
BfmI CTRYAG 3 cut(s) 352, 466, 698
BfuAI ACCTGC 2 cut(s) 705, 823
BisI GCNGC 3 cut(s) 548, 645, 836
BlsI GCNGC 3 cut(s) 549, 646, 837
BmcAI AGTACT 1 cut(s) 620
Bme1390I CCNGG 5 cut(s) 33, 903, 1001, 1034, 1090
BmeRI GACNNNNNGTC 1 cut(s) 1072
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 3 cut(s) 38, 150, 659
BmrFI CCNGG 5 cut(s) 33, 903, 1001, 1034, 1090
BmsI GCATC 4 cut(s) 312, 550, 569, 1090
BpuEI CTTGAG 2 cut(s) 414, 661
BpuMI CCSGG 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 921
BsaBI GATNNNNATC 1 cut(s) 987
BsaI GGTCTC 1 cut(s) 884
BsaJI CCNNGG 7 cut(s) 32, 152, 370, 652, 820, 902, 1000
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 821, 826, 1095
Bse1I ACTGG 3 cut(s) 22, 392, 616
Bse8I GATNNNNATC 1 cut(s) 987
BseBI CCWGG 4 cut(s) 903, 1001, 1034, 1090
BseDI CCNNGG 7 cut(s) 32, 152, 370, 652, 820, 902, 1000
BseGI GGATG 2 cut(s) 1011, 1105
BseJI GATNNNNATC 1 cut(s) 987
BseLI CCNNNNNNNGG 4 cut(s) 52, 821, 826, 1095
BseNI ACTGG 3 cut(s) 22, 392, 616
BseRI GAGGAG 2 cut(s) 969, 972
BseXI GCAGC 3 cut(s) 559, 656, 847
BseYI CCCAGC 2 cut(s) 269, 792
Bsh1285I CGRYCG 1 cut(s) 1030
BshFI GGCC 2 cut(s) 260, 375
BsiEI CGRYCG 1 cut(s) 1030
BsiHKAI GWGCWC 1 cut(s) 367
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 2 cut(s) 308, 688
BslI CCNNNNNNNGG 4 cut(s) 52, 821, 826, 1095
BsmAI GTCTC 3 cut(s) 603, 849, 884
BsmFI GGGAC 2 cut(s) 308, 688
BsnI GGCC 2 cut(s) 260, 375
Bso31I GGTCTC 1 cut(s) 884
Bsp1286I GDGCHC 1 cut(s) 367
Bsp143I GATC 7 cut(s) 424, 462, 931, 994, 1027, 1048, 1060
BspACI CCGC 5 cut(s) 292, 406, 707, 883, 975
BspANI GGCC 2 cut(s) 260, 375
BspHI TCATGA 3 cut(s) 840, 991, 1045
BspLI GGNNCC 3 cut(s) 38, 150, 659
BspMAI CTGCAG 1 cut(s) 702
BspMI ACCTGC 2 cut(s) 705, 823
BspPI GGATC 1 cut(s) 419
BspQI GCTCTTC 1 cut(s) 54
BspTNI GGTCTC 1 cut(s) 884
BsrI ACTGG 3 cut(s) 22, 392, 616
BssECI CCNNGG 7 cut(s) 32, 152, 370, 652, 820, 902, 1000
BssMI GATC 7 cut(s) 424, 462, 931, 994, 1027, 1048, 1060
BssT1I CCWWGG 2 cut(s) 152, 652
Bst2UI CCWGG 4 cut(s) 903, 1001, 1034, 1090
Bst4CI ACNGT 1 cut(s) 860
Bst6I CTCTTC 5 cut(s) 54, 538, 793, 973, 1120
BstBAI YACGTR 1 cut(s) 921
BstC8I GCNNGC 3 cut(s) 582, 586, 973
BstDSI CCRYGG 2 cut(s) 370, 820
BstF5I GGATG 2 cut(s) 1011, 1105
BstKTI GATC 7 cut(s) 427, 465, 934, 997, 1030, 1051, 1063
BstMAI GTCTC 3 cut(s) 603, 849, 884
BstMBI GATC 7 cut(s) 424, 462, 931, 994, 1027, 1048, 1060
BstMCI CGRYCG 1 cut(s) 1030
BstMWI GCNNNNNNNGC 4 cut(s) 266, 547, 706, 968
BstNI CCWGG 4 cut(s) 903, 1001, 1034, 1090
BstSCI CCNGG 5 cut(s) 31, 901, 999, 1032, 1088
BstSFI CTRYAG 3 cut(s) 352, 466, 698
BstV1I GCAGC 3 cut(s) 559, 656, 847
BsuRI GGCC 2 cut(s) 260, 375
BtgI CCRYGG 2 cut(s) 370, 820
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 2 cut(s) 1011, 1105
BveI ACCTGC 2 cut(s) 705, 823
Cac8I GCNNGC 3 cut(s) 582, 586, 973
CciI TCATGA 3 cut(s) 840, 991, 1045
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 4 cut(s) 205, 232, 403, 619
CspCI CAANNNNNGTGG 2 cut(s) 182, 217
CviQI GTAC 4 cut(s) 205, 232, 403, 619
DpnI GATC 7 cut(s) 426, 464, 933, 996, 1029, 1050, 1062
DpnII GATC 7 cut(s) 424, 462, 931, 994, 1027, 1048, 1060
DrdI GACNNNNNNGTC 1 cut(s) 116
DriI GACNNNNNGTC 1 cut(s) 1072
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 373
Eam1104I CTCTTC 5 cut(s) 54, 538, 793, 973, 1120
Eam1105I GACNNNNNGTC 1 cut(s) 1072
EarI CTCTTC 5 cut(s) 54, 538, 793, 973, 1120
EciI GGCGGA 1 cut(s) 990
Ecl136II GAGCTC 1 cut(s) 365
Eco130I CCWWGG 2 cut(s) 152, 652
Eco24I GRGCYC 1 cut(s) 367
Eco31I GGTCTC 1 cut(s) 884
Eco53kI GAGCTC 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 519
Eco72I CACGTG 1 cut(s) 921
EcoICRI GAGCTC 1 cut(s) 365
EcoRII CCWGG 4 cut(s) 901, 999, 1032, 1088
EcoT14I CCWWGG 2 cut(s) 152, 652
EcoT22I ATGCAT 4 cut(s) 305, 399, 562, 600
EcoT38I GRGCYC 1 cut(s) 367
ErhI CCWWGG 2 cut(s) 152, 652
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 2 cut(s) 308, 688
FauI CCCGC 2 cut(s) 285, 714
FbaI TGATCA 2 cut(s) 994, 1060
FblI GTMKAC 1 cut(s) 185
Fnu4HI GCNGC 3 cut(s) 548, 645, 836
FokI GGATG 2 cut(s) 1018, 1112
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 3 cut(s) 548, 645, 836
FspBI CTAG 3 cut(s) 444, 522, 852
GluI GCNGC 3 cut(s) 548, 645, 836
GsaI CCCAGC 2 cut(s) 273, 796
HaeIII GGCC 2 cut(s) 260, 375
HapII CCGG 1 cut(s) 32
HincII GTYRAC 2 cut(s) 186, 1123
HindII GTYRAC 2 cut(s) 186, 1123
HinfI GANTC 4 cut(s) 42, 187, 809, 1067
HpaII CCGG 1 cut(s) 32
HphI GGTGA 3 cut(s) 472, 804, 989
Hpy166II GTNNAC 4 cut(s) 133, 186, 899, 1123
Hpy188I TCNGA 5 cut(s) 41, 102, 308, 538, 805
Hpy188III TCNNGA 7 cut(s) 319, 478, 745, 841, 992, 1046, 1064
Hpy8I GTNNAC 4 cut(s) 133, 186, 899, 1123
Hpy99I CGWCG 2 cut(s) 809, 1075
HpyAV CCTTC 5 cut(s) 274, 325, 503, 601, 692
HpyCH4III ACNGT 1 cut(s) 860
HpyCH4IV ACGT 1 cut(s) 920
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 547, 706, 968
HpySE526I ACGT 1 cut(s) 920
Ksp22I TGATCA 2 cut(s) 994, 1060
Kzo9I GATC 7 cut(s) 424, 462, 931, 994, 1027, 1048, 1060
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 4 cut(s) 370, 593, 801, 959
Lsp1109I GCAGC 3 cut(s) 559, 656, 847
LweI GCATC 4 cut(s) 312, 550, 569, 1090
MaeI CTAG 3 cut(s) 444, 522, 852
MaeII ACGT 1 cut(s) 920
MaeIII GTNAC 1 cut(s) 1036
MalI GATC 7 cut(s) 426, 464, 933, 996, 1029, 1050, 1062
MboI GATC 7 cut(s) 424, 462, 931, 994, 1027, 1048, 1060
MfeI CAATTG 1 cut(s) 575
MhlI GDGCHC 1 cut(s) 367
MluCI AATT 4 cut(s) 7, 487, 575, 1128
MlyI GAGTC 3 cut(s) 181, 803, 1061
MmeI TCCRAC 3 cut(s) 685, 828, 931
Mph1103I ATGCAT 4 cut(s) 305, 399, 562, 600
MroXI GAANNNNTTC 1 cut(s) 491
MseI TTAA 1 cut(s) 1131
MspA1I CMGCKG 1 cut(s) 971
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 5 cut(s) 33, 903, 1001, 1034, 1090
MunI CAATTG 1 cut(s) 575
MvaI CCWGG 4 cut(s) 903, 1001, 1034, 1090
MwoI GCNNNNNNNGC 4 cut(s) 266, 547, 706, 968
NciI CCSGG 1 cut(s) 33
NdeII GATC 7 cut(s) 424, 462, 931, 994, 1027, 1048, 1060
NlaIV GGNNCC 3 cut(s) 38, 150, 659
NsiI ATGCAT 4 cut(s) 305, 399, 562, 600
PagI TCATGA 3 cut(s) 840, 991, 1045
PaqCI CACCTGC 2 cut(s) 705, 823
PciSI GCTCTTC 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 1 cut(s) 42
PflMI CCANNNNNTGG 1 cut(s) 826
PkrI GCNGC 3 cut(s) 549, 646, 837
Ple19I CGATCG 1 cut(s) 1030
PleI GAGTC 3 cut(s) 181, 803, 1061
PmaCI CACGTG 1 cut(s) 921
PmlI CACGTG 1 cut(s) 921
PpsI GAGTC 3 cut(s) 181, 803, 1061
Ppu21I YACGTR 1 cut(s) 921
Psp124BI GAGCTC 1 cut(s) 367
Psp6I CCWGG 4 cut(s) 901, 999, 1032, 1088
PspCI CACGTG 1 cut(s) 921
PspFI CCCAGC 2 cut(s) 269, 792
PspGI CCWGG 4 cut(s) 901, 999, 1032, 1088
PspN4I GGNNCC 3 cut(s) 38, 150, 659
PspPI GGNCC 1 cut(s) 258
PstI CTGCAG 1 cut(s) 702
PvuI CGATCG 1 cut(s) 1030
PvuII CAGCTG 1 cut(s) 971
RsaI GTAC 4 cut(s) 206, 233, 404, 620
RsaNI GTAC 4 cut(s) 205, 232, 403, 619
SacI GAGCTC 1 cut(s) 367
SalI GTCGAC 1 cut(s) 184
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 1 cut(s) 1131
SatI GCNGC 3 cut(s) 548, 645, 836
Sau3AI GATC 7 cut(s) 424, 462, 931, 994, 1027, 1048, 1060
Sau96I GGNCC 1 cut(s) 258
ScaI AGTACT 1 cut(s) 620
SchI GAGTC 3 cut(s) 181, 803, 1061
ScrFI CCNGG 5 cut(s) 33, 903, 1001, 1034, 1090
SduI GDGCHC 1 cut(s) 367
SfaNI GCATC 4 cut(s) 312, 550, 569, 1090
SfcI CTRYAG 3 cut(s) 352, 466, 698
SmlI CTYRAG 2 cut(s) 429, 676
SmoI CTYRAG 2 cut(s) 429, 676
Sse9I AATT 4 cut(s) 7, 487, 575, 1128
SsiI CCGC 5 cut(s) 292, 406, 707, 883, 975
SspMI CTAG 3 cut(s) 444, 522, 852
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 5 cut(s) 31, 901, 999, 1032, 1088
StyI CCWWGG 2 cut(s) 152, 652
TaaI ACNGT 1 cut(s) 860
TaiI ACGT 1 cut(s) 923
TaqI TCGA 4 cut(s) 14, 185, 245, 1026
TasI AATT 4 cut(s) 7, 487, 575, 1128
TatI WGTACW 1 cut(s) 618
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 1131
Tru9I TTAA 1 cut(s) 1131
TseI GCWGC 3 cut(s) 547, 644, 835
TspDTI ATGAA 3 cut(s) 522, 542, 583
TspGWI ACGGA 2 cut(s) 68, 1108
Van91I CCANNNNNTGG 1 cut(s) 826
XapI RAATTY 2 cut(s) 7, 487
XcmI CCANNNNNNNNNTGG 1 cut(s) 198
XmiI GTMKAC 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 491
XspI CTAG 3 cut(s) 444, 522, 852
ZrmI AGTACT 1 cut(s) 620
Zsp2I ATGCAT 4 cut(s) 305, 399, 562, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.