Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014489

Physical Location & Seq

Genomic Coordinates Forward (+)

1453837 .. 1454219

Gene Structure 383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1005600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTCAAGCAGCTCATGACAAACCCTAGAGACCGCGAAAGTGGCAGTGAGGGCCTCCGGTACCAAGCTTGTGAGCCAGTGTTAGAGGTTGGCACGTGCGAACCAAACCATCAACTGAATACGGTTGCAGGAGGAGCTGGAGCAGCTGGCGGAAGAGATAATAATCATGATCACCAGGGGATGAGTGAATGGGCTATGCTCGACCGCCTGGTTACTTCTCATGACCTTGGAAATGATCAAGATTCGTCGTCCAAAGGAGCAGCCAGGTATGAGGATGCAAATGCACCCTCTTCTGTCAACCAAATTAACCCCCAGCACCTCTCGTTGCGTGGAGAGATGGATTTTTGGGGCTATGCAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042546 GO:0043565 GO:0044085 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

121

Amino Acids

13.06

Weight (kDa)

5.04

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10350 AT4G10350
fragaria_vesca	FvH4_2g00240
malus_domestica	MD05G1005600.v1.1 MD10G1000900.v1.1
prunus_persica	Prupe.8G002500_v2.0.a1
pyrus_communis	pycom05g00070
rosa_chinensis	RchiOBHm_Chr6g0249541
rosa_laevigata	RLG00000015571
rosa_multiflora	Rmu_ssc0000407.1_g000012
rosa_roxburghii	Rroxscaffold_7G00217580
rosa_rugosa	Rorug05G0493400
rosa_samantha	Rh6AG003100 Rh6BG007000 Rh6CG002100 Rh6DG002100
rosa_wichuraiana	Rw6G000360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	60
AccII	CGCG	1 cut(s)	36
AciI	CCGC	3 cut(s)	34, 150, 205
AcvI	CACGTG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	62
AjnI	CCWGG	3 cut(s)	174, 207, 263
AluBI	AGCT	4 cut(s)	13, 68, 137, 146
AluI	AGCT	4 cut(s)	13, 68, 137, 146
Alw26I	GTCTC	1 cut(s)	24
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	3 cut(s)	10, 143, 260
Asp718I	GGTACC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	60
BbrPI	CACGTG	1 cut(s)	96
BbvI	GCAGC	3 cut(s)	22, 155, 272
BccI	CCATC	2 cut(s)	117, 331
BciT130I	CCWGG	3 cut(s)	176, 209, 265
BclI	TGATCA	2 cut(s)	169, 235
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	3 cut(s)	11, 144, 261
BlsI	GCNGC	3 cut(s)	12, 145, 262
Bme1390I	CCNGG	3 cut(s)	176, 209, 265
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	3 cut(s)	176, 209, 265
BmsI	GCATC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	162
BsaI	GGTCTC	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	175, 226
BsaWI	WCCGGW	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	77
Bse8I	GATNNNNATC	1 cut(s)	162
BseBI	CCWGG	3 cut(s)	176, 209, 265
BseDI	CCNNGG	2 cut(s)	175, 226
BseGI	GGATG	2 cut(s)	186, 280
BseJI	GATNNNNATC	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	3 cut(s)	22, 155, 272
BseYI	CCCAGC	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	60
BsiEI	CGRYCG	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	54
Bso31I	GGTCTC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	169, 235
BspACI	CCGC	3 cut(s)	34, 150, 205
BspANI	GGCC	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	36
BspHI	TCATGA	3 cut(s)	15, 166, 220
BspLI	GGNNCC	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	24
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	175, 226
BssMI	GATC	2 cut(s)	169, 235
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	3 cut(s)	176, 209, 265
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	2 cut(s)	148, 295
BstBAI	YACGTR	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	148
BstF5I	GGATG	2 cut(s)	186, 280
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	2 cut(s)	172, 238
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	169, 235
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 51, 134, 143
BstNI	CCWGG	3 cut(s)	176, 209, 265
BstSCI	CCNGG	3 cut(s)	174, 207, 263
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	3 cut(s)	22, 155, 272
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	186, 280
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	2 cut(s)	52, 84
Cac8I	GCNNGC	1 cut(s)	148
CciI	TCATGA	3 cut(s)	15, 166, 220
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	3 cut(s)	16, 167, 221
CviJI	RGCY	9 cut(s)	13, 54, 68, 76, 137, 146, 194, 263, 351
CviKI_1	RGCY	9 cut(s)	13, 54, 68, 76, 137, 146, 194, 263, 351
CviQI	GTAC	1 cut(s)	61
DpnI	GATC	2 cut(s)	171, 237
DpnII	GATC	2 cut(s)	169, 235
Eam1104I	CTCTTC	2 cut(s)	148, 295
EarI	CTCTTC	2 cut(s)	148, 295
EciI	GGCGGA	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	24
Eco72I	CACGTG	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	3 cut(s)	174, 207, 263
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	3 cut(s)	19, 170, 224
FaiI	YATR	6 cut(s)	17, 168, 197, 222, 270, 354
FatI	CATG	3 cut(s)	15, 166, 220
FbaI	TGATCA	2 cut(s)	169, 235
Fnu4HI	GCNGC	3 cut(s)	11, 144, 261
FokI	GGATG	2 cut(s)	193, 287
Fsp4HI	GCNGC	3 cut(s)	11, 144, 261
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	3 cut(s)	11, 144, 261
GsaI	CCCAGC	1 cut(s)	316
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	58
Hin1II	CATG	3 cut(s)	19, 170, 224
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188III	TCNNGA	4 cut(s)	16, 167, 221, 239
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	4 cut(s)	128, 278, 284, 356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 51, 134, 143
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	3 cut(s)	19, 170, 224
KpnI	GGTACC	1 cut(s)	64
Ksp22I	TGATCA	2 cut(s)	169, 235
Kzo9I	GATC	2 cut(s)	169, 235
LmnI	GCTCC	3 cut(s)	134, 140, 257
Lsp1109I	GCAGC	3 cut(s)	22, 155, 272
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	2 cut(s)	171, 237
MboI	GATC	2 cut(s)	169, 235
MboII	GAAGA	2 cut(s)	165, 282
MluCI	AATT	1 cut(s)	303
MnlI	CCTC	7 cut(s)	43, 65, 79, 125, 265, 298, 329
MseI	TTAA	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	146
MspI	CCGG	1 cut(s)	58
MspR9I	CCNGG	3 cut(s)	176, 209, 265
MvaI	CCWGG	3 cut(s)	176, 209, 265
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	4 cut(s)	42, 51, 134, 143
NdeII	GATC	2 cut(s)	169, 235
NlaIII	CATG	3 cut(s)	19, 170, 224
NlaIV	GGNNCC	1 cut(s)	62
PagI	TCATGA	3 cut(s)	15, 166, 220
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	12, 145, 262
PmaCI	CACGTG	1 cut(s)	96
PmlI	CACGTG	1 cut(s)	96
Ppu21I	YACGTR	1 cut(s)	96
Psp6I	CCWGG	3 cut(s)	174, 207, 263
PspCI	CACGTG	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	3 cut(s)	174, 207, 263
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	1 cut(s)	52
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	3 cut(s)	11, 144, 261
Sau3AI	GATC	2 cut(s)	169, 235
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	3 cut(s)	176, 209, 265
SetI	ASST	9 cut(s)	15, 70, 90, 98, 139, 148, 228, 269, 321
SfaNI	GCATC	1 cut(s)	265
Sse9I	AATT	1 cut(s)	303
SsiI	CCGC	3 cut(s)	34, 150, 205
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	3 cut(s)	174, 207, 263
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	52, 84
TseI	GCWGC	3 cut(s)	10, 143, 260
TspRI	CASTG	2 cut(s)	52, 84
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.