Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0014489

Physical Location & Seq

Genomic Coordinates Forward (+)

737666 .. 739879

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G000360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCAACATCAAGTGGAGGTGTTCCCCCAGGGTTCCGATTCCACCCTACCGACGAAGAGCTGCTTCACTATTATTTGAAGAAGAAGGTGTCCTTTCAGAAGTTTGACATGGAGGTCATCAGAGAGGTCGACTTGAACAAGATGGAACCTTGGGAGTTGCAAGAGAGATGTAGAATTGGGTCGACTCCGCAAAATGAGTGGTACTTTTTCAGCCACAAAGACAGGAAGTACCCGACAGGGTCAAGGACGAATAGGGCAACAAATGCTGGGTTTTGGAAGGCAACAGGGAGAGACAAGTGCATCAGAAACACCTATAAGAAGATTGGAATGAGGAAAACCCTGGTTTTCTACAGAGGAAGAGCACCCCATGGCCAAAAGACTGATTGGATTATGCATGAGTACCGCCTTGAAGATGGCGATGATCCTCAAGGAAATTTATCTAGTGAAGATGGATGGGTGATATGTAGGGTGTTTAAAAAGAAGAATTTATTCAAGGTAACTGGGAATAATGAAGGAGGAAGCTCTAGCATGAACTCATCAGATCATCACCATCATCAACAGCTGACTATGAACACCAACCAATTGCAAGCTCGCACCTTCATGCATACGCATAGCAGCAGATCAGATACCAACCAATACTTACTACGCCAACAAGCCTTTGAACTAAACAGACCTCATGATCATGATCAAGATCAGGATCAGTTGCCACCCGCCCTCCACTATGCCCACCTCAATTTGCAGCCGCCTCCTCAATACTCTCTTTTCCACTCTCAAGCCCTTAATGTACCAACTAACTCCCACAAAACCCTTGCTGCCTATAATGACTATTCTACCCTCCCTTCCGATTCGTCACCTGGCCATGGCATGGTCAAGCAGCTCATGACCAACCCCAGAGACTGCGAGAGCACTGGCAGCGAGAGCCTCCGGTACCAAGCTTGTGAACCGGGCTTGGAAGTTAACGACACCACGTGCGAAACAAATCAGCAAGCGATAGTTAATGCAGGAGCAAGATCATCAGATGTTCAAGGCATGAGCGAATGGGCTATGCTGGACCGGCTTGTAACTTCTCATCTTGGAAATGAAGATTCAACGTCCAAAGGTGGAGCTTCTGCAGGTGCGAGGTATGATCAGGACGGGAATGGATCCTCCACTGTCAACCAGATTAACCAGCAGCAGCTCTCTTTGCGTGGAGAGATGGATTTTTGGGGCTATGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0007275 GO:0008150 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042546 GO:0043565 GO:0044085 GO:0045893 GO:0045935 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

406

Amino Acids

46.16

Weight (kDa)

6.83

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	9 - 136	2.1e-46	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10350 AT4G10350
fragaria_vesca	FvH4_2g00240
malus_domestica	MD05G1005600.v1.1 MD10G1000900.v1.1
prunus_persica	Prupe.8G002500_v2.0.a1
pyrus_communis	pycom05g00070
rosa_chinensis	RchiOBHm_Chr6g0249541
rosa_laevigata	RLG00000015571
rosa_multiflora	Rmu_ssc0000407.1_g000012
rosa_roxburghii	Rroxscaffold_7G00217580
rosa_rugosa	Rorug05G0493400
rosa_samantha	Rh6AG003100 Rh6BG007000 Rh6CG002100 Rh6DG002100
rosa_wichuraiana	Rw6G000360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1103
AasI	GACNNNNNNGTC	1 cut(s)	113
Acc36I	ACCTGC	1 cut(s)	1103
Acc65I	GGTACC	1 cut(s)	927
AccB1I	GGYRCC	1 cut(s)	927
AccB7I	CCANNNNNTGG	1 cut(s)	865
AccI	GTMKAC	2 cut(s)	129, 182
AciI	CCGC	4 cut(s)	188, 403, 711, 743
AclWI	GGATC	4 cut(s)	416, 705, 1137, 1150
AcoI	YGGCCR	2 cut(s)	370, 856
AcsI	RAATTY	2 cut(s)	433, 484
AcvI	CACGTG	1 cut(s)	969
AdeI	CACNNNGTG	1 cut(s)	969
AfaI	GTAC	5 cut(s)	203, 230, 401, 786, 929
AfiI	CCNNNNNNNGG	2 cut(s)	860, 865
AgsI	TTSAA	7 cut(s)	79, 136, 410, 493, 662, 1025, 1089
AjnI	CCWGG	3 cut(s)	28, 339, 853
AluBI	AGCT	8 cut(s)	61, 522, 562, 590, 877, 935, 1106, 1177
AluI	AGCT	8 cut(s)	61, 522, 562, 590, 877, 935, 1106, 1177
Alw21I	GWGCWC	2 cut(s)	364, 908
Alw26I	GTCTC	2 cut(s)	285, 888
AlwI	GGATC	4 cut(s)	416, 705, 1137, 1150
AlwNI	CAGNNNCTG	1 cut(s)	897
AoxI	GGCC	2 cut(s)	370, 856
ApeKI	GCWGC	8 cut(s)	61, 615, 739, 812, 874, 912, 1171, 1174
ApoI	RAATTY	2 cut(s)	433, 484
Asp700I	GAANNNNTTC	1 cut(s)	488
Asp718I	GGTACC	1 cut(s)	927
AspS9I	GGNCC	1 cut(s)	1051
AsuC2I	CCSGG	1 cut(s)	945
AsuHPI	GGTGA	3 cut(s)	469, 539, 843
AvaII	GGWCC	1 cut(s)	1051
BalI	TGGCCA	2 cut(s)	372, 858
BamHI	GGATCC	1 cut(s)	1142
BanI	GGYRCC	1 cut(s)	927
BbrPI	CACGTG	1 cut(s)	969
Bbv12I	GWGCWC	2 cut(s)	364, 908
BbvI	GCAGC	8 cut(s)	48, 627, 751, 799, 886, 924, 1183, 1186
BccI	CCATC	6 cut(s)	136, 407, 443, 447, 558, 1189
BciT130I	CCWGG	3 cut(s)	30, 341, 855
BclI	TGATCA	3 cut(s)	679, 685, 1126
BcnI	CCSGG	1 cut(s)	945
BcoDI	GTCTC	2 cut(s)	285, 888
BfaI	CTAG	2 cut(s)	441, 525
BfmI	CTRYAG	2 cut(s)	349, 1110
BfuAI	ACCTGC	1 cut(s)	1103
BisI	GCNGC	9 cut(s)	62, 616, 740, 743, 813, 875, 913, 1172, 1175
BlsI	GCNGC	9 cut(s)	63, 617, 741, 744, 814, 876, 914, 1173, 1176
Bme1390I	CCNGG	4 cut(s)	30, 341, 855, 945
Bme18I	GGWCC	1 cut(s)	1051
BmgT120I	GGNCC	1 cut(s)	1051
BmiI	GGNNCC	4 cut(s)	35, 147, 929, 1144
BmrFI	CCNGG	4 cut(s)	30, 341, 855, 945
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	1 cut(s)	309
BmuI	ACTGGG	1 cut(s)	510
BpuEI	CTTGAG	2 cut(s)	411, 756
BpuMI	CCSGG	1 cut(s)	945
BsaAI	YACGTR	1 cut(s)	969
BsaBI	GATNNNNATC	3 cut(s)	684, 690, 696
BsaJI	CCNNGG	6 cut(s)	28, 29, 149, 339, 367, 859
BsaWI	WCCGGW	1 cut(s)	924
BsaXI	ACNNNNNCTCC	2 cut(s)	699, 729
Bsc4I	CCNNNNNNNGG	2 cut(s)	860, 865
Bse118I	RCCGGY	1 cut(s)	1053
Bse1I	ACTGG	2 cut(s)	505, 913
Bse8I	GATNNNNATC	3 cut(s)	684, 690, 696
BseBI	CCWGG	3 cut(s)	30, 341, 855
BseDI	CCNNGG	6 cut(s)	28, 29, 149, 339, 367, 859
BseGI	GGATG	1 cut(s)	458
BseJI	GATNNNNATC	3 cut(s)	684, 690, 696
BseLI	CCNNNNNNNGG	2 cut(s)	860, 865
BseNI	ACTGG	2 cut(s)	505, 913
BseRI	GAGGAG	1 cut(s)	738
BseXI	GCAGC	8 cut(s)	48, 627, 751, 799, 886, 924, 1183, 1186
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	2 cut(s)	372, 858
BshNI	GGYRCC	1 cut(s)	927
BsiHKAI	GWGCWC	2 cut(s)	364, 908
BsiSI	CCGG	3 cut(s)	925, 944, 1054
BslI	CCNNNNNNNGG	2 cut(s)	860, 865
BsmAI	GTCTC	2 cut(s)	285, 888
BsnI	GGCC	2 cut(s)	372, 858
Bsp1286I	GDGCHC	2 cut(s)	364, 908
Bsp19I	CCATGG	2 cut(s)	367, 859
BspACI	CCGC	4 cut(s)	188, 403, 711, 743
BspANI	GGCC	2 cut(s)	372, 858
BspHI	TCATGA	3 cut(s)	676, 682, 879
BspLI	GGNNCC	4 cut(s)	35, 147, 929, 1144
BspMAI	CTGCAG	1 cut(s)	1114
BspMI	ACCTGC	1 cut(s)	1103
BspPI	GGATC	4 cut(s)	416, 705, 1137, 1150
BspQI	GCTCTTC	2 cut(s)	51, 352
BspT107I	GGYRCC	1 cut(s)	927
BsrFI	RCCGGY	1 cut(s)	1053
BsrI	ACTGG	2 cut(s)	505, 913
BssAI	RCCGGY	1 cut(s)	1053
BssECI	CCNNGG	6 cut(s)	28, 29, 149, 339, 367, 859
BssT1I	CCWWGG	3 cut(s)	149, 367, 859
Bst2UI	CCWGG	3 cut(s)	30, 341, 855
Bst4CI	ACNGT	1 cut(s)	1153
Bst6I	CTCTTC	2 cut(s)	51, 352
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstBAI	YACGTR	1 cut(s)	969
BstC8I	GCNNGC	3 cut(s)	588, 592, 987
BstDSI	CCRYGG	2 cut(s)	367, 859
BstF5I	GGATG	1 cut(s)	458
BstMAI	GTCTC	2 cut(s)	285, 888
BstMWI	GCNNNNNNNGC	5 cut(s)	263, 912, 918, 1054, 1183
BstNI	CCWGG	3 cut(s)	30, 341, 855
BstSCI	CCNGG	4 cut(s)	28, 339, 853, 943
BstSFI	CTRYAG	2 cut(s)	349, 1110
BstV1I	GCAGC	8 cut(s)	48, 627, 751, 799, 886, 924, 1183, 1186
BstX2I	RGATCY	1 cut(s)	1142
BstYI	RGATCY	1 cut(s)	1142
BsuRI	GGCC	2 cut(s)	372, 858
BtgI	CCRYGG	2 cut(s)	367, 859
BtgZI	GCGATG	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	458
BtsIMutI	CAGTG	2 cut(s)	906, 1149
BveI	ACCTGC	1 cut(s)	1103
Cac8I	GCNNGC	3 cut(s)	588, 592, 987
CaiI	CAGNNNCTG	1 cut(s)	897
CciI	TCATGA	3 cut(s)	676, 682, 879
Cfr10I	RCCGGY	1 cut(s)	1053
Cfr13I	GGNCC	1 cut(s)	1051
Csp6I	GTAC	5 cut(s)	202, 229, 400, 785, 928
CspCI	CAANNNNNGTGG	2 cut(s)	179, 214
CviQI	GTAC	5 cut(s)	202, 229, 400, 785, 928
DraI	TTTAAA	1 cut(s)	475
DraIII	CACNNNGTG	1 cut(s)	969
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
EaeI	YGGCCR	2 cut(s)	370, 856
Eam1104I	CTCTTC	2 cut(s)	51, 352
EarI	CTCTTC	2 cut(s)	51, 352
Eco130I	CCWWGG	3 cut(s)	149, 367, 859
Eco47I	GGWCC	1 cut(s)	1051
Eco72I	CACGTG	1 cut(s)	969
EcoRII	CCWGG	3 cut(s)	28, 339, 853
EcoT14I	CCWWGG	3 cut(s)	149, 367, 859
EcoT22I	ATGCAT	2 cut(s)	396, 606
ErhI	CCWWGG	3 cut(s)	149, 367, 859
FalI	AAGNNNNNCTT	4 cut(s)	48, 80, 77, 109
FauI	CCCGC	1 cut(s)	718
FbaI	TGATCA	3 cut(s)	679, 685, 1126
FblI	GTMKAC	2 cut(s)	129, 182
Fnu4HI	GCNGC	9 cut(s)	62, 616, 740, 743, 813, 875, 913, 1172, 1175
FokI	GGATG	1 cut(s)	465
Fsp4HI	GCNGC	9 cut(s)	62, 616, 740, 743, 813, 875, 913, 1172, 1175
FspBI	CTAG	2 cut(s)	441, 525
GluI	GCNGC	9 cut(s)	62, 616, 740, 743, 813, 875, 913, 1172, 1175
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	372, 858
HapII	CCGG	3 cut(s)	925, 944, 1054
HincII	GTYRAC	4 cut(s)	130, 183, 958, 1156
HindII	GTYRAC	4 cut(s)	130, 183, 958, 1156
HindIII	AAGCTT	1 cut(s)	933
HinfI	GANTC	4 cut(s)	39, 184, 845, 1085
HpaI	GTTAAC	1 cut(s)	958
HpaII	CCGG	3 cut(s)	925, 944, 1054
HphI	GGTGA	3 cut(s)	469, 539, 843
Hpy166II	GTNNAC	5 cut(s)	130, 183, 941, 958, 1156
Hpy188I	TCNGA	8 cut(s)	38, 99, 122, 305, 541, 625, 844, 1018
Hpy188III	TCNNGA	6 cut(s)	677, 683, 689, 695, 880, 1130
Hpy8I	GTNNAC	5 cut(s)	130, 183, 941, 958, 1156
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	5 cut(s)	79, 271, 506, 607, 849
HpyCH4III	ACNGT	1 cut(s)	1153
HpyCH4IV	ACGT	2 cut(s)	968, 1091
HpyCH4V	TGCA	9 cut(s)	160, 300, 394, 586, 604, 739, 1001, 1112, 1214
HpyF10VI	GCNNNNNNNGC	5 cut(s)	263, 912, 918, 1054, 1183
HpySE526I	ACGT	2 cut(s)	968, 1091
KpnI	GGTACC	1 cut(s)	931
Ksp22I	TGATCA	3 cut(s)	679, 685, 1126
KspAI	GTTAAC	1 cut(s)	958
LguI	GCTCTTC	2 cut(s)	51, 352
LmnI	GCTCC	2 cut(s)	1004, 1103
Lsp1109I	GCAGC	8 cut(s)	48, 627, 751, 799, 886, 924, 1183, 1186
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	2 cut(s)	441, 525
MaeII	ACGT	2 cut(s)	968, 1091
MaeIII	GTNAC	3 cut(s)	496, 849, 1060
MboII	GAAGA	9 cut(s)	68, 91, 94, 331, 369, 422, 458, 493, 1094
MfeI	CAATTG	1 cut(s)	581
MflI	RGATCY	1 cut(s)	1142
MhlI	GDGCHC	2 cut(s)	364, 908
MlsI	TGGCCA	2 cut(s)	372, 858
MluCI	AATT	5 cut(s)	174, 433, 484, 581, 733
MluNI	TGGCCA	2 cut(s)	372, 858
MlyI	GAGTC	1 cut(s)	178
Mox20I	TGGCCA	2 cut(s)	372, 858
Mph1103I	ATGCAT	2 cut(s)	396, 606
MroXI	GAANNNNTTC	1 cut(s)	488
MscI	TGGCCA	2 cut(s)	372, 858
MseI	TTAA	5 cut(s)	474, 780, 957, 996, 1164
MslI	CAYNNNNRTG	2 cut(s)	599, 681
Msp20I	TGGCCA	2 cut(s)	372, 858
MspA1I	CMGCKG	1 cut(s)	562
MspI	CCGG	3 cut(s)	925, 944, 1054
MspR9I	CCNGG	4 cut(s)	30, 341, 855, 945
MunI	CAATTG	1 cut(s)	581
MvaI	CCWGG	3 cut(s)	30, 341, 855
MwoI	GCNNNNNNNGC	5 cut(s)	263, 912, 918, 1054, 1183
NciI	CCSGG	1 cut(s)	945
NcoI	CCATGG	2 cut(s)	367, 859
NlaIV	GGNNCC	4 cut(s)	35, 147, 929, 1144
NmuCI	GTSAC	1 cut(s)	849
NsiI	ATGCAT	2 cut(s)	396, 606
PagI	TCATGA	3 cut(s)	676, 682, 879
PaqCI	CACCTGC	1 cut(s)	1103
PasI	CCCWGGG	1 cut(s)	29
PciSI	GCTCTTC	2 cut(s)	51, 352
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	3 cut(s)	39, 845, 1085
PflFI	GACNNNGTC	1 cut(s)	238
PflMI	CCANNNNNTGG	1 cut(s)	865
PkrI	GCNGC	9 cut(s)	63, 617, 741, 744, 814, 876, 914, 1173, 1176
PleI	GAGTC	1 cut(s)	178
PmaCI	CACGTG	1 cut(s)	969
PmlI	CACGTG	1 cut(s)	969
PpsI	GAGTC	1 cut(s)	178
Ppu21I	YACGTR	1 cut(s)	969
Psp6I	CCWGG	3 cut(s)	28, 339, 853
PspCI	CACGTG	1 cut(s)	969
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	3 cut(s)	28, 339, 853
PspN4I	GGNNCC	4 cut(s)	35, 147, 929, 1144
PspPI	GGNCC	1 cut(s)	1051
PstI	CTGCAG	1 cut(s)	1114
PstNI	CAGNNNCTG	1 cut(s)	897
PsuI	RGATCY	1 cut(s)	1142
PsyI	GACNNNGTC	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	562
RsaI	GTAC	5 cut(s)	203, 230, 401, 786, 929
RsaNI	GTAC	5 cut(s)	202, 229, 400, 785, 928
RseI	CAYNNNNRTG	2 cut(s)	599, 681
SalI	GTCGAC	2 cut(s)	128, 181
SapI	GCTCTTC	2 cut(s)	51, 352
SaqAI	TTAA	5 cut(s)	474, 780, 957, 996, 1164
SatI	GCNGC	9 cut(s)	62, 616, 740, 743, 813, 875, 913, 1172, 1175
Sau96I	GGNCC	1 cut(s)	1051
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	4 cut(s)	30, 341, 855, 945
SduI	GDGCHC	2 cut(s)	364, 908
SfaNI	GCATC	1 cut(s)	309
SfcI	CTRYAG	2 cut(s)	349, 1110
SinI	GGWCC	1 cut(s)	1051
SmiMI	CAYNNNNRTG	2 cut(s)	599, 681
SmlI	CTYRAG	2 cut(s)	426, 771
SmoI	CTYRAG	2 cut(s)	426, 771
Sse9I	AATT	5 cut(s)	174, 433, 484, 581, 733
SsiI	CCGC	4 cut(s)	188, 403, 711, 743
SspMI	CTAG	2 cut(s)	441, 525
StyD4I	CCNGG	4 cut(s)	28, 339, 853, 943
StyI	CCWWGG	3 cut(s)	149, 367, 859
TaaI	ACNGT	1 cut(s)	1153
TaiI	ACGT	2 cut(s)	971, 1094
TaqI	TCGA	2 cut(s)	129, 182
TasI	AATT	5 cut(s)	174, 433, 484, 581, 733
TauI	GCSGC	1 cut(s)	745
TfiI	GAWTC	3 cut(s)	39, 845, 1085
Tru1I	TTAA	5 cut(s)	474, 780, 957, 996, 1164
Tru9I	TTAA	5 cut(s)	474, 780, 957, 996, 1164
TscAI	CASTG	2 cut(s)	913, 1156
TseFI	GTSAC	1 cut(s)	849
TseI	GCWGC	8 cut(s)	61, 615, 739, 812, 874, 912, 1171, 1174
Tsp45I	GTSAC	1 cut(s)	849
TspDTI	ATGAA	5 cut(s)	525, 545, 584, 589, 1095
TspRI	CASTG	2 cut(s)	913, 1156
Tth111I	GACNNNGTC	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	865
VpaK11BI	GGWCC	1 cut(s)	1051
XapI	RAATTY	2 cut(s)	433, 484
XmiI	GTMKAC	2 cut(s)	129, 182
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	2 cut(s)	441, 525
Zsp2I	ATGCAT	2 cut(s)	396, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.