Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009265

Physical Location & Seq

Genomic Coordinates Reverse (-)

7174886 .. 7177888

Gene Structure 3003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTTTTACTCTAACAATCCCTAGATTTTCTGCAATTTCTCGCAAACCCATCACTTGTTCTTCTTCGAGGACACAGTGTCCTGCTCCCTTTACCCATGGACGATCGATTTCTCTCAGACGAAGACTTACCTTATTGCCCCTTAAAGCTTCTACTGATCAATCAGGTCAGGTGGGTGGGGAAGAAGTTGATAGCAAGATTTTACCTTATTGTAGCATCAACAAGAATGAGAAGAGAACTATCGGTGAAATGGAACAAGAGTTCCTCCAAGCGATGCAATCGTTTTATTACGAAGGCAAAGCGATTATGTCTAATGAAGAGTTTGATAACCTTAAAGAAGAGTTGATGTGGGAAGGAAGCAGTGTTGTCATGCTAAGTTCTGATGAACAAAGATTCCTTGAAGCTTCAATGGCTTATGTCTCTGGAAATCCAATCTTGAGTGATGAAGAGTATGATAAGCTCAAAATGAAACTAAAGATGGACGGCAGTGAGATTGTGTGTGAGGGTCCAAGATGCAGTCTTCGTAGTAAAAAGGTTTATAGTGATCTTGCCATTGATTACTTCAAAATGTTCTTGTTGAATGTACCAGCAACTGTTGTTGCTCTCGGACTATTTTTCTTTCTTGATGACATTACTGGTTTTGAAATCACGTACCTGCTCGAGCTTCCGGAACCATTCAGTTTCATTTTCACATGGTTCGCTGCGGTGCCTGCAATTGTATATCTGGCGTTATCACTCACCAAACTGATCCTCAAAGACTTCTTGATCTTGAAGGGCCCTTGCCCAAACTGTGGAACAGAGAATGTATCTTTCTTTGGAACGATACTATCCATCCCCAATGATAGTAACACCAACAATGTCAAATGCTCAGGCTGTGGAACGGAGATGGTCTATGACTCAGGTTCTCGTTTGATCACATTACCAGAAGGAGGGAAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

34.91

Weight (kDa)

5.05

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11960 AT4G11960 AT4G22890 AT4G22890 AT4G22890 AT4G22890 AT4G22890
fragaria_vesca	FvH4_5g01180 FvH4_5g01180
malus_domestica	MD04G1071000.v1.1
prunus_persica	Prupe.5G086900_v2.0.a1
pyrus_communis	pycom04g06420
rosa_chinensis	RchiOBHm_Chr7g0199911
rosa_laevigata	RLG00000003760
rosa_multiflora	Rmu_sc0002748.1_g000009
rosa_roxburghii	Rroxscaffold_3G00256380
rosa_rugosa	Rorug07G0057000
rosa_samantha	Rh7AG182400 Rh7BG185300 Rh7CG191900 Rh7DG185200
rosa_wichuraiana	Rw7G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	706
AccB7I	CCANNNNNTGG	1 cut(s)	791
AccIII	TCCGGA	1 cut(s)	667
AciI	CCGC	1 cut(s)	704
AclWI	GGATC	1 cut(s)	742
AfaI	GTAC	2 cut(s)	585, 653
AfiI	CCNNNNNNNGG	2 cut(s)	791, 929
AgsI	TTSAA	6 cut(s)	401, 408, 565, 580, 644, 772
AhdI	GACNNNNNGTC	1 cut(s)	78
AloI	GAACNNNNNNTCC	6 cut(s)	245, 246, 277, 278, 378, 410
AluBI	AGCT	5 cut(s)	149, 404, 460, 664, 938
AluI	AGCT	5 cut(s)	149, 404, 460, 664, 938
Alw26I	GTCTC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	742
AlwNI	CAGNNNCTG	1 cut(s)	593
Ama87I	CYCGRG	1 cut(s)	659
Aor13HI	TCCGGA	1 cut(s)	667
AoxI	GGCC	1 cut(s)	775
ApaI	GGGCCC	1 cut(s)	779
ApeKI	GCWGC	1 cut(s)	701
AspS9I	GGNCC	3 cut(s)	506, 775, 776
AsuHPI	GGTGA	2 cut(s)	257, 730
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	1 cut(s)	506
BaeGI	GKGCMC	1 cut(s)	779
BanI	GGYRCC	1 cut(s)	706
BanII	GRGCYC	1 cut(s)	779
BbsI	GAAGAC	2 cut(s)	130, 512
BbvI	GCAGC	1 cut(s)	688
BccI	CCATC	4 cut(s)	59, 472, 839, 880
BceAI	ACGGC	1 cut(s)	499
BclI	TGATCA	2 cut(s)	157, 912
BcoDI	GTCTC	1 cut(s)	424
BfaI	CTAG	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	663
BisI	GCNGC	1 cut(s)	702
BlsI	GCNGC	1 cut(s)	703
Bme18I	GGWCC	1 cut(s)	506
BmeRI	GACNNNNNGTC	1 cut(s)	78
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	3 cut(s)	506, 775, 776
BmiI	GGNNCC	4 cut(s)	507, 672, 708, 777
BmsI	GCATC	3 cut(s)	225, 264, 503
BpiI	GAAGAC	2 cut(s)	130, 512
Bpu10I	CCTNAGC	1 cut(s)	868
BpuEI	CTTGAG	1 cut(s)	457
Bsa29I	ATCGAT	1 cut(s)	107
BsaAI	YACGTR	1 cut(s)	651
BsaJI	CCNNGG	1 cut(s)	97
BsaWI	WCCGGW	1 cut(s)	667
Bsc4I	CCNNNNNNNGG	2 cut(s)	791, 929
Bse1I	ACTGG	1 cut(s)	640
BseAI	TCCGGA	1 cut(s)	667
BseCI	ATCGAT	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	831
BseLI	CCNNNNNNNGG	2 cut(s)	791, 929
BseMII	CTCAG	3 cut(s)	130, 882, 912
BseNI	ACTGG	1 cut(s)	640
BseSI	GKGCMC	1 cut(s)	779
BseXI	GCAGC	1 cut(s)	688
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	777
BshNI	GGYRCC	1 cut(s)	706
BshVI	ATCGAT	1 cut(s)	107
BsiEI	CGRYCG	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	1 cut(s)	668
BslI	CCNNNNNNNGG	2 cut(s)	791, 929
BsmAI	GTCTC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	777
BsoBI	CYCGRG	1 cut(s)	659
Bsp120I	GGGCCC	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	779
Bsp13I	TCCGGA	1 cut(s)	667
Bsp143I	GATC	6 cut(s)	104, 157, 544, 747, 765, 912
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	1 cut(s)	704
BspANI	GGCC	1 cut(s)	777
BspCNI	CTCAG	3 cut(s)	129, 881, 911
BspDI	ATCGAT	1 cut(s)	107
BspEI	TCCGGA	1 cut(s)	667
BspLI	GGNNCC	4 cut(s)	507, 672, 708, 777
BspMI	ACCTGC	1 cut(s)	663
BspPI	GGATC	1 cut(s)	742
BspT107I	GGYRCC	1 cut(s)	706
BsrI	ACTGG	1 cut(s)	640
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	6 cut(s)	104, 157, 544, 747, 765, 912
BssT1I	CCWWGG	1 cut(s)	97
Bst4CI	ACNGT	3 cut(s)	78, 595, 791
Bst6I	CTCTTC	4 cut(s)	227, 312, 333, 441
BstBAI	YACGTR	1 cut(s)	651
BstC8I	GCNNGC	1 cut(s)	711
BstDEI	CTNAG	4 cut(s)	116, 374, 868, 898
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	831
BstKTI	GATC	6 cut(s)	107, 160, 547, 750, 768, 915
BstMAI	GTCTC	1 cut(s)	424
BstMBI	GATC	6 cut(s)	104, 157, 544, 747, 765, 912
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 710
BstSLI	GKGCMC	1 cut(s)	779
BstV1I	GCAGC	1 cut(s)	688
BstV2I	GAAGAC	2 cut(s)	130, 512
Bsu15I	ATCGAT	1 cut(s)	107
BsuRI	GGCC	1 cut(s)	777
BsuTUI	ATCGAT	1 cut(s)	107
BtgI	CCRYGG	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	831
BtsI	GCAGTG	2 cut(s)	367, 493
BtsIMutI	CAGTG	3 cut(s)	83, 367, 493
BveI	ACCTGC	1 cut(s)	663
Cac8I	GCNNGC	1 cut(s)	711
CaiI	CAGNNNCTG	1 cut(s)	593
Cfr13I	GGNCC	3 cut(s)	506, 775, 776
ClaI	ATCGAT	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	584, 652
CviAII	CATG	3 cut(s)	98, 370, 693
CviJI	RGCY	9 cut(s)	5, 149, 404, 413, 460, 664, 777, 873, 938
CviKI_1	RGCY	9 cut(s)	5, 149, 404, 413, 460, 664, 777, 873, 938
CviQI	GTAC	2 cut(s)	584, 652
DdeI	CTNAG	4 cut(s)	116, 374, 868, 898
DpnI	GATC	6 cut(s)	106, 159, 546, 749, 767, 914
DpnII	GATC	6 cut(s)	104, 157, 544, 747, 765, 912
DriI	GACNNNNNGTC	1 cut(s)	78
Eam1104I	CTCTTC	4 cut(s)	227, 312, 333, 441
Eam1105I	GACNNNNNGTC	1 cut(s)	78
EarI	CTCTTC	4 cut(s)	227, 312, 333, 441
Eco130I	CCWWGG	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	779
Eco47I	GGWCC	1 cut(s)	506
Eco88I	CYCGRG	1 cut(s)	659
EcoO109I	RGGNCCY	2 cut(s)	775, 776
EcoT14I	CCWWGG	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	779
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	3 cut(s)	101, 373, 696
FaiI	YATR	9 cut(s)	99, 308, 371, 417, 453, 540, 694, 721, 894
FatI	CATG	3 cut(s)	97, 369, 692
FbaI	TGATCA	2 cut(s)	157, 912
Fnu4HI	GCNGC	1 cut(s)	702
FokI	GGATG	1 cut(s)	818
FriOI	GRGCYC	1 cut(s)	779
Fsp4HI	GCNGC	1 cut(s)	702
FspBI	CTAG	1 cut(s)	24
GluI	GCNGC	1 cut(s)	702
HaeIII	GGCC	1 cut(s)	777
HapII	CCGG	1 cut(s)	668
Hin1II	CATG	3 cut(s)	101, 373, 696
HindIII	AAGCTT	3 cut(s)	147, 402, 936
HinfI	GANTC	2 cut(s)	393, 896
HpaII	CCGG	1 cut(s)	668
HphI	GGTGA	2 cut(s)	257, 730
Hpy188I	TCNGA	3 cut(s)	119, 382, 608
Hpy188III	TCNNGA	6 cut(s)	423, 436, 623, 668, 763, 769
HpyAV	CCTTC	4 cut(s)	287, 347, 766, 920
HpyCH4III	ACNGT	3 cut(s)	78, 595, 791
HpyCH4IV	ACGT	1 cut(s)	650
HpyCH4V	TGCA	4 cut(s)	35, 277, 516, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 710
HpyF3I	CTNAG	4 cut(s)	116, 374, 868, 898
HpySE526I	ACGT	1 cut(s)	650
Hsp92II	CATG	3 cut(s)	101, 373, 696
Kpn2I	TCCGGA	1 cut(s)	667
Ksp22I	TGATCA	2 cut(s)	157, 912
Kzo9I	GATC	6 cut(s)	104, 157, 544, 747, 765, 912
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	1 cut(s)	688
LweI	GCATC	3 cut(s)	225, 264, 503
MaeI	CTAG	1 cut(s)	24
MaeII	ACGT	1 cut(s)	650
MaeIII	GTNAC	1 cut(s)	845
MalI	GATC	6 cut(s)	106, 159, 546, 749, 767, 914
MboI	GATC	6 cut(s)	104, 157, 544, 747, 765, 912
MboII	GAAGA	9 cut(s)	54, 57, 135, 194, 244, 329, 350, 458, 512
MfeI	CAATTG	1 cut(s)	714
MhlI	GDGCHC	1 cut(s)	779
MluCI	AATT	2 cut(s)	36, 714
MlyI	GAGTC	1 cut(s)	890
MnlI	CCTC	5 cut(s)	63, 275, 496, 761, 923
MroI	TCCGGA	1 cut(s)	667
MseI	TTAA	3 cut(s)	144, 333, 940
MspI	CCGG	1 cut(s)	668
MunI	CAATTG	1 cut(s)	714
MwoI	GCNNNNNNNGC	2 cut(s)	410, 710
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	6 cut(s)	104, 157, 544, 747, 765, 912
NlaIII	CATG	3 cut(s)	101, 373, 696
NlaIV	GGNNCC	4 cut(s)	507, 672, 708, 777
PaeR7I	CTCGAG	1 cut(s)	659
PfeI	GAWTC	1 cut(s)	393
PflMI	CCANNNNNTGG	1 cut(s)	791
PkrI	GCNGC	1 cut(s)	703
Ple19I	CGATCG	1 cut(s)	107
PleI	GAGTC	1 cut(s)	890
PpsI	GAGTC	1 cut(s)	890
Ppu21I	YACGTR	1 cut(s)	651
PspN4I	GGNNCC	4 cut(s)	507, 672, 708, 777
PspOMI	GGGCCC	1 cut(s)	775
PspPI	GGNCC	3 cut(s)	506, 775, 776
PspXI	VCTCGAGB	1 cut(s)	659
PstNI	CAGNNNCTG	1 cut(s)	593
PvuI	CGATCG	1 cut(s)	107
RsaI	GTAC	2 cut(s)	585, 653
RsaNI	GTAC	2 cut(s)	584, 652
SaqAI	TTAA	3 cut(s)	144, 333, 940
SatI	GCNGC	1 cut(s)	702
Sau3AI	GATC	6 cut(s)	104, 157, 544, 747, 765, 912
Sau96I	GGNCC	3 cut(s)	506, 775, 776
SchI	GAGTC	1 cut(s)	890
SduI	GDGCHC	1 cut(s)	779
SfaNI	GCATC	3 cut(s)	225, 264, 503
Sfr274I	CTCGAG	1 cut(s)	659
SinI	GGWCC	1 cut(s)	506
SlaI	CTCGAG	1 cut(s)	659
SmlI	CTYRAG	2 cut(s)	436, 659
SmoI	CTYRAG	2 cut(s)	436, 659
Sse9I	AATT	2 cut(s)	36, 714
SsiI	CCGC	1 cut(s)	704
SspMI	CTAG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	3 cut(s)	78, 595, 791
TaiI	ACGT	1 cut(s)	653
TaqI	TCGA	3 cut(s)	68, 107, 660
TasI	AATT	2 cut(s)	36, 714
TfiI	GAWTC	1 cut(s)	393
Tru1I	TTAA	3 cut(s)	144, 333, 940
Tru9I	TTAA	3 cut(s)	144, 333, 940
TscAI	CASTG	3 cut(s)	83, 367, 493
TseI	GCWGC	1 cut(s)	701
TspDTI	ATGAA	5 cut(s)	330, 399, 459, 482, 673
TspGWI	ACGGA	1 cut(s)	896
TspRI	CASTG	3 cut(s)	83, 367, 493
Van91I	CCANNNNNTGG	1 cut(s)	791
VpaK11BI	GGWCC	1 cut(s)	506
XhoI	CTCGAG	1 cut(s)	659
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.