Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009265

Physical Location & Seq

Genomic Coordinates Forward (+)

9827484 .. 9831357

Gene Structure 3874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G086900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCCACCAAATTAGCCTTCACCTTAACATCTCCAACCCCTTTTAATCCCTCTAGTCAGAGACCCTTTGTTTCTGTTTCTTCTCCCTCCACAAGGGTTGAGTCTTTTCAGTTCAGAGGGAGGCAGCTATGTCTCCGGCGCCGGCTTCTGGTTCTTCCCTCTAAGGCTACTGCTGACCAACGACAAGACAAGGTTGAAGACGAGGAAGTTTTTGATGGCAAGATCCTGCAATATTGTAGCATAGACAAGAAAGGGAAGAAGTCTTTGGGTGAACTTGAACAAGACTTTCTTCAAGCTCTACAATCATTCTATTATGATGGTAAAGCTATTATGTCAAACGAGGAATTTGATAATCTCAAGGAAGAACTAATGTGGGAGGGCAGCAGCGTTGTTATGCTAAGCTCTGATGAACAGAAGTTTTTGGAAGCTTCAATGGCCTATGTGTCTGGGAAACCAATTCTGACAGACGAAGAGTATGATAAACTGAAGATGAGGCTAAAGACGGAAGGGAGTGATATTGTAGTTGAGGGTCCCAGATGCAGTCTCCGTACCAGAAAGGTTTACAGTGACCTGAGTGTTGACTATTTGAAGATGCTCCTGCTGAATGTCCCAGCAACTGTTGTTGCCCTAGCAGCGTTCTTCTTCCTGGATGATGTAACTGGGTTCGAAATCACGTATCTTTTGGAGCTGCCAGAGCCATACAGCTTCATTTTCACATGGTTTGCTGCTGTTCCAGTCATAGTTTATTTAGCTCAGGCACTCACCAAACTGATTGTGAAGGATGTTCTGATCTTAAAGGGCCCTTGTCCAAACTGTGGTACAGAGAATGTGTCCTTCTTCGGGACCATACTATCCATTTCAAACGGCGGTGCTACCAACACCATTAAATGCTCAAACTGTGGAACTCCGTTGGTTTATGATTCAAATACGCGTTTGATTACATTGCCAGAAGGAAGCAATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0015979 GO:0016020 GO:0016491 GO:0016730 GO:0019684 GO:0019904 GO:0022900 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

322

Amino Acids

35.84

Weight (kDa)

5.06

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009265)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11960 AT4G11960 AT4G22890 AT4G22890 AT4G22890 AT4G22890 AT4G22890
fragaria_vesca	FvH4_5g01180 FvH4_5g01180
malus_domestica	MD04G1071000.v1.1
prunus_persica	Prupe.5G086900_v2.0.a1
pyrus_communis	pycom04g06420
rosa_chinensis	RchiOBHm_Chr7g0199911
rosa_laevigata	RLG00000003760
rosa_multiflora	Rmu_sc0002748.1_g000009
rosa_roxburghii	Rroxscaffold_3G00256380
rosa_rugosa	Rorug07G0057000
rosa_samantha	Rh7AG182400 Rh7BG185300 Rh7CG191900 Rh7DG185200
rosa_wichuraiana	Rw7G016000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	138
AccB7I	CCANNNNNTGG	1 cut(s)	815
AccII	CGCG	1 cut(s)	931
AciI	CCGC	1 cut(s)	867
AclWI	GGATC	1 cut(s)	217
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	1 cut(s)	139
AfaI	GTAC	2 cut(s)	550, 820
AfiI	CCNNNNNNNGG	4 cut(s)	93, 148, 815, 840
AflIII	ACRYGT	1 cut(s)	929
AgsI	TTSAA	7 cut(s)	197, 278, 293, 432, 589, 861, 924
AjnI	CCWGG	1 cut(s)	645
AjuI	GAANNNNNNNTTGG	3 cut(s)	34, 248, 280
AluBI	AGCT	8 cut(s)	127, 296, 326, 402, 428, 688, 705, 752
AluI	AGCT	8 cut(s)	127, 296, 326, 402, 428, 688, 705, 752
Alw26I	GTCTC	3 cut(s)	55, 137, 548
AlwI	GGATC	1 cut(s)	217
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	3 cut(s)	3, 435, 799
ApaI	GGGCCC	1 cut(s)	803
ApeKI	GCWGC	6 cut(s)	124, 381, 384, 632, 688, 725
ApoI	RAATTY	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	4 cut(s)	530, 799, 800, 843
AsuHPI	GGTGA	3 cut(s)	13, 281, 754
AsuII	TTCGAA	1 cut(s)	666
AvaII	GGWCC	2 cut(s)	530, 843
BaeGI	GKGCMC	1 cut(s)	803
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	803
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	6 cut(s)	136, 393, 396, 644, 675, 712
BccI	CCATC	2 cut(s)	209, 311
BceAI	ACGGC	1 cut(s)	880
BciT130I	CCWGG	1 cut(s)	647
BcoDI	GTCTC	3 cut(s)	55, 137, 548
BfaI	CTAG	2 cut(s)	54, 629
BfoI	RGCGCY	1 cut(s)	142
BisI	GCNGC	6 cut(s)	125, 382, 385, 633, 689, 726
BlpI	GCTNAGC	1 cut(s)	398
BlsI	GCNGC	6 cut(s)	126, 383, 386, 634, 690, 727
Bme1390I	CCNGG	1 cut(s)	647
Bme18I	GGWCC	2 cut(s)	530, 843
BmgT120I	GGNCC	4 cut(s)	530, 799, 800, 843
BmiI	GGNNCC	5 cut(s)	140, 531, 532, 801, 844
BmrFI	CCNGG	1 cut(s)	647
BmrI	ACTGGG	1 cut(s)	669
BmsI	GCATC	2 cut(s)	527, 582
BmuI	ACTGGG	1 cut(s)	669
BpiI	GAAGAC	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	753
Bpu1102I	GCTNAGC	1 cut(s)	398
Bpu14I	TTCGAA	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	675
BsaHI	GRCGYC	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 148, 815, 840
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	2 cut(s)	664, 734
Bse3DI	GCAATG	2 cut(s)	941, 964
BseBI	CCWGG	1 cut(s)	647
BseGI	GGATG	2 cut(s)	655, 787
BseLI	CCNNNNNNNGG	4 cut(s)	93, 148, 815, 840
BseMI	GCAATG	2 cut(s)	941, 964
BseMII	CTCAG	2 cut(s)	563, 767
BseNI	ACTGG	2 cut(s)	664, 734
BseSI	GKGCMC	1 cut(s)	803
BseXI	GCAGC	6 cut(s)	136, 393, 396, 644, 675, 712
BseYI	CCCAGC	1 cut(s)	610
Bsh1236I	CGCG	1 cut(s)	931
BshFI	GGCC	3 cut(s)	5, 437, 801
BshNI	GGYRCC	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	136, 142
BslFI	GGGAC	3 cut(s)	516, 593, 856
BslI	CCNNNNNNNGG	4 cut(s)	93, 148, 815, 840
BsmAI	GTCTC	3 cut(s)	55, 137, 548
BsmFI	GGGAC	3 cut(s)	516, 593, 856
BsnI	GGCC	3 cut(s)	5, 437, 801
Bso31I	GGTCTC	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	666
Bsp120I	GGGCCC	1 cut(s)	799
Bsp1286I	GDGCHC	1 cut(s)	803
Bsp143I	GATC	2 cut(s)	222, 789
Bsp1720I	GCTNAGC	1 cut(s)	398
BspACI	CCGC	1 cut(s)	867
BspANI	GGCC	3 cut(s)	5, 437, 801
BspCNI	CTCAG	2 cut(s)	564, 766
BspFNI	CGCG	1 cut(s)	931
BspLI	GGNNCC	5 cut(s)	140, 531, 532, 801, 844
BspPI	GGATC	1 cut(s)	217
BspT104I	TTCGAA	1 cut(s)	666
BspT107I	GGYRCC	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	2 cut(s)	941, 964
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	2 cut(s)	664, 734
BssAI	RCCGGY	1 cut(s)	141
BssMI	GATC	2 cut(s)	222, 789
BssNI	GRCGYC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	4 cut(s)	566, 619, 815, 899
Bst6I	CTCTTC	1 cut(s)	465
BstACI	GRCGYC	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	675
BstBI	TTCGAA	1 cut(s)	666
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	4 cut(s)	162, 398, 572, 753
BstENI	CCTNNNNNAGG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	655, 787
BstFNI	CGCG	1 cut(s)	931
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	2 cut(s)	225, 792
BstMAI	GTCTC	3 cut(s)	55, 137, 548
BstMBI	GATC	2 cut(s)	222, 789
BstMWI	GCNNNNNNNGC	3 cut(s)	434, 632, 694
BstNI	CCWGG	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	645
BstSLI	GKGCMC	1 cut(s)	803
BstUI	CGCG	1 cut(s)	931
BstV1I	GCAGC	6 cut(s)	136, 393, 396, 644, 675, 712
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	222
BstYI	RGATCY	1 cut(s)	222
BsuRI	GGCC	3 cut(s)	5, 437, 801
BtsCI	GGATG	2 cut(s)	655, 787
BtsIMutI	CAGTG	1 cut(s)	571
Cac8I	GCNNGC	1 cut(s)	143
CaiI	CAGNNNCTG	1 cut(s)	617
CfoI	GCGC	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	4 cut(s)	530, 799, 800, 843
Csp6I	GTAC	2 cut(s)	549, 819
CspCI	CAANNNNNGTGG	2 cut(s)	79, 114
CviAII	CATG	1 cut(s)	717
CviQI	GTAC	2 cut(s)	549, 819
DdeI	CTNAG	4 cut(s)	162, 398, 572, 753
DinI	GGCGCC	1 cut(s)	140
DpnI	GATC	2 cut(s)	224, 791
DpnII	GATC	2 cut(s)	222, 789
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	803
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	530, 843
Eco57I	CTGAAG	1 cut(s)	506
EcoNI	CCTNNNNNAGG	1 cut(s)	91
EcoO109I	RGGNCCY	3 cut(s)	530, 799, 800
EcoRII	CCWGG	1 cut(s)	645
EcoT38I	GRGCYC	1 cut(s)	803
EgeI	GGCGCC	1 cut(s)	140
EheI	GGCGCC	1 cut(s)	140
FaeI	CATG	1 cut(s)	720
FalI	AAGNNNNNCTT	3 cut(s)	273, 305, 946
FaqI	GGGAC	3 cut(s)	516, 593, 856
FatI	CATG	1 cut(s)	716
Fnu4HI	GCNGC	6 cut(s)	125, 382, 385, 633, 689, 726
FokI	GGATG	2 cut(s)	662, 794
FriOI	GRGCYC	1 cut(s)	803
Fsp4HI	GCNGC	6 cut(s)	125, 382, 385, 633, 689, 726
FspBI	CTAG	2 cut(s)	54, 629
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	6 cut(s)	125, 382, 385, 633, 689, 726
GsaI	CCCAGC	1 cut(s)	614
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	3 cut(s)	5, 437, 801
HapII	CCGG	2 cut(s)	136, 142
HhaI	GCGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	139
Hin1II	CATG	1 cut(s)	720
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	580
HindII	GTYRAC	1 cut(s)	580
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	2 cut(s)	101, 920
HpaII	CCGG	2 cut(s)	136, 142
HphI	GGTGA	3 cut(s)	13, 281, 754
Hpy166II	GTNNAC	3 cut(s)	272, 562, 580
Hpy188I	TCNGA	5 cut(s)	60, 116, 406, 462, 789
Hpy188III	TCNNGA	1 cut(s)	841
Hpy8I	GTNNAC	3 cut(s)	272, 562, 580
HpyAV	CCTTC	5 cut(s)	28, 500, 772, 844, 944
HpyCH4III	ACNGT	4 cut(s)	566, 619, 815, 899
HpyCH4IV	ACGT	1 cut(s)	674
HpyCH4V	TGCA	2 cut(s)	229, 540
HpyF10VI	GCNNNNNNNGC	3 cut(s)	434, 632, 694
HpyF3I	CTNAG	4 cut(s)	162, 398, 572, 753
HpySE526I	ACGT	1 cut(s)	674
Hsp92I	GRCGYC	1 cut(s)	139
Hsp92II	CATG	1 cut(s)	720
HspAI	GCGC	1 cut(s)	139
KasI	GGCGCC	1 cut(s)	138
KflI	GGGWCCC	1 cut(s)	530
KroI	GCCGGC	1 cut(s)	141
KroNI	GCCGGC	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	222, 789
LmnI	GCTCC	2 cut(s)	600, 685
Lsp1109I	GCAGC	6 cut(s)	136, 393, 396, 644, 675, 712
LweI	GCATC	2 cut(s)	527, 582
MaeI	CTAG	2 cut(s)	54, 629
MaeII	ACGT	1 cut(s)	674
MaeIII	GTNAC	2 cut(s)	566, 655
MalI	GATC	2 cut(s)	224, 791
MboI	GATC	2 cut(s)	222, 789
MflI	RGATCY	1 cut(s)	222
MhlI	GDGCHC	1 cut(s)	803
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	11, 344, 456
MluI	ACGCGT	1 cut(s)	929
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	139
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	59
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	141
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	26, 45, 794, 885
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	136, 142
MspR9I	CCNGG	1 cut(s)	647
MvaI	CCWGG	1 cut(s)	647
MvnI	CGCG	1 cut(s)	931
MwoI	GCNNNNNNNGC	3 cut(s)	434, 632, 694
NaeI	GCCGGC	1 cut(s)	143
NarI	GGCGCC	1 cut(s)	139
NdeII	GATC	2 cut(s)	222, 789
NgoMIV	GCCGGC	1 cut(s)	141
NlaIII	CATG	1 cut(s)	720
NlaIV	GGNNCC	5 cut(s)	140, 531, 532, 801, 844
NmuCI	GTSAC	1 cut(s)	566
NspV	TTCGAA	1 cut(s)	666
PdiI	GCCGGC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	920
PflMI	CCANNNNNTGG	1 cut(s)	815
PfoI	TCCNGGA	1 cut(s)	645
PkrI	GCNGC	6 cut(s)	126, 383, 386, 634, 690, 727
PleI	GAGTC	1 cut(s)	109
PluTI	GGCGCC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	675
PpuMI	RGGWCCY	1 cut(s)	530
Psp5II	RGGWCCY	1 cut(s)	530
Psp6I	CCWGG	1 cut(s)	645
PspFI	CCCAGC	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	5 cut(s)	140, 531, 532, 801, 844
PspOMI	GGGCCC	1 cut(s)	799
PspPI	GGNCC	4 cut(s)	530, 799, 800, 843
PspPPI	RGGWCCY	1 cut(s)	530
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	222
RsaI	GTAC	2 cut(s)	550, 820
RsaNI	GTAC	2 cut(s)	549, 819
SaqAI	TTAA	4 cut(s)	26, 45, 794, 885
SatI	GCNGC	6 cut(s)	125, 382, 385, 633, 689, 726
Sau3AI	GATC	2 cut(s)	222, 789
Sau96I	GGNCC	4 cut(s)	530, 799, 800, 843
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	647
SduI	GDGCHC	1 cut(s)	803
SfaNI	GCATC	2 cut(s)	527, 582
SfoI	GGCGCC	1 cut(s)	140
SfuI	TTCGAA	1 cut(s)	666
SinI	GGWCC	2 cut(s)	530, 843
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	3 cut(s)	11, 344, 456
SsiI	CCGC	1 cut(s)	867
SspDI	GGCGCC	1 cut(s)	138
SspI	AATATT	1 cut(s)	233
SspMI	CTAG	2 cut(s)	54, 629
StyD4I	CCNGG	1 cut(s)	645
TaaI	ACNGT	4 cut(s)	566, 619, 815, 899
TaiI	ACGT	1 cut(s)	677
TaqI	TCGA	1 cut(s)	666
TasI	AATT	3 cut(s)	11, 344, 456
TfiI	GAWTC	1 cut(s)	920
Tru1I	TTAA	4 cut(s)	26, 45, 794, 885
Tru9I	TTAA	4 cut(s)	26, 45, 794, 885
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	6 cut(s)	124, 381, 384, 632, 688, 725
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	2 cut(s)	423, 697
TspGWI	ACGGA	3 cut(s)	518, 536, 897
TspRI	CASTG	1 cut(s)	571
Van91I	CCANNNNNTGG	1 cut(s)	815
VpaK11BI	GGWCC	2 cut(s)	530, 843
XagI	CCTNNNNNAGG	1 cut(s)	91
XapI	RAATTY	1 cut(s)	344
XspI	CTAG	2 cut(s)	54, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.